Wall clock time and date at job start Tue Mar 31 2020 12:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 H 1.08998 * 109.46646 * 304.99802 * 3 2 1 5 5 C 1.50698 * 109.46717 * 185.00355 * 3 2 1 6 6 H 1.08003 * 119.99570 * 239.99852 * 5 3 2 7 7 C 1.37869 * 120.00528 * 59.99971 * 5 3 2 8 8 N 1.31518 * 120.00186 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00331 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46958 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47270 * 119.99692 * 9 7 5 12 12 H 1.48496 * 109.47270 * 239.99846 * 9 7 5 13 13 N 1.46496 * 109.47017 * 65.00128 * 3 2 1 14 14 C 1.34782 * 119.99961 * 274.99351 * 13 3 2 15 15 O 1.21282 * 119.99822 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99885 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47324 * 320.00107 * 16 14 13 18 18 N 1.46899 * 109.46909 * 200.00385 * 16 14 13 19 19 C 1.52997 * 109.47055 * 80.00394 * 16 14 13 20 20 C 1.52999 * 109.46991 * 60.00330 * 19 16 14 21 21 C 1.52997 * 109.46991 * 180.02562 * 20 19 16 22 22 C 1.53004 * 109.47530 * 59.99990 * 21 20 19 23 23 C 1.53002 * 109.46492 * 299.99890 * 22 21 20 24 24 C 1.53006 * 109.47348 * 299.99942 * 23 22 21 25 25 C 1.52997 * 109.46974 * 59.99989 * 24 23 22 26 26 C 1.52996 * 109.47131 * 299.99311 * 21 20 19 27 27 C 1.52997 * 109.47232 * 60.00243 * 25 24 23 28 28 C 1.52997 * 109.47232 * 299.99767 * 19 16 14 29 29 H 1.08997 * 109.47222 * 59.99925 * 1 2 3 30 30 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46839 * 300.00136 * 1 2 3 32 32 H 1.08994 * 109.46877 * 239.99833 * 2 1 3 33 33 H 1.09001 * 109.46999 * 119.99625 * 2 1 3 34 34 H 0.96999 * 120.00389 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00037 * 95.00142 * 13 3 2 36 36 H 1.00893 * 111.00546 * 300.00019 * 18 16 14 37 37 H 1.00896 * 111.00301 * 63.95923 * 18 16 14 38 38 H 1.09002 * 109.46719 * 299.99711 * 20 19 16 39 39 H 1.08993 * 109.47839 * 59.99553 * 20 19 16 40 40 H 1.09001 * 109.47289 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.47550 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.47347 * 59.99574 * 22 21 20 43 43 H 1.09004 * 109.46930 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.46866 * 300.00214 * 24 23 22 45 45 H 1.08998 * 109.46884 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.47045 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47452 * 300.00000 * 26 21 20 48 48 H 1.09000 * 109.47054 * 180.02562 * 26 21 20 49 49 H 1.09001 * 109.47502 * 180.02562 * 27 25 24 50 50 H 1.09001 * 109.47289 * 60.00075 * 27 25 24 51 51 H 1.09001 * 109.47375 * 299.99867 * 28 19 16 52 52 H 1.09002 * 109.46777 * 60.00422 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5987 1.5472 -0.1949 11 1 6.4971 -0.5176 -1.4630 12 1 6.3990 1.6166 -2.6103 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6645 1.3669 15 8 -0.3395 2.6321 0.4343 16 6 0.0367 3.3387 2.6544 17 1 0.3965 2.7508 3.4989 18 7 -1.4270 3.4440 2.7194 19 6 0.6517 4.7386 2.7086 20 6 0.1465 5.5637 1.5233 21 6 0.7620 6.9634 1.5771 22 6 2.2865 6.8532 1.5089 23 6 2.7916 6.0281 2.6943 24 6 2.3876 6.7130 4.0015 25 6 0.8631 6.8232 4.0695 26 6 0.3580 7.6482 2.8842 27 6 0.2477 5.4235 4.0157 28 6 2.1762 4.6289 2.6409 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0612 -2.9499 35 1 2.2720 2.1231 1.9977 36 1 -1.7854 3.9848 1.9467 37 1 -1.8543 2.5305 2.7503 38 1 0.4348 5.0760 0.5920 39 1 -0.9395 5.6418 1.5714 40 1 0.4025 7.5511 0.7324 41 1 2.7250 7.8504 1.5477 42 1 2.5744 6.3653 0.5777 43 1 3.8777 5.9492 2.6456 44 1 2.8261 7.7102 4.0398 45 1 2.7478 6.1253 4.8459 46 1 0.5753 7.3115 5.0006 47 1 -0.7281 7.7268 2.9326 48 1 0.7961 8.6456 2.9223 49 1 -0.8385 5.5020 4.0637 50 1 0.6074 4.8357 4.8602 51 1 2.5361 4.0411 3.4854 52 1 2.4644 4.1413 1.7096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:29 Heat of formation + Delta-G solvation = -75.820172 kcal Electronic energy + Delta-G solvation = -30263.661977 eV Core-core repulsion = 26646.550153 eV Total energy + Delta-G solvation = -3617.111824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62566 -39.04885 -35.59097 -34.57814 -32.74086 -32.50646 -32.21700 -31.09691 -30.79849 -27.28100 -25.82574 -25.78203 -25.06788 -22.99114 -21.48407 -21.32375 -20.89991 -19.61472 -19.20854 -17.47901 -17.08930 -15.97821 -15.62114 -15.40134 -14.68539 -14.50930 -14.48663 -14.31344 -14.11869 -14.03099 -13.49805 -13.36906 -13.17812 -12.83340 -12.70354 -12.46768 -12.35304 -12.21902 -11.95560 -11.62508 -11.34315 -11.28370 -10.99170 -10.90396 -10.77037 -10.74375 -10.68650 -10.67550 -10.63380 -10.31057 -10.21639 -9.73193 -9.67289 -9.56794 -9.49618 -9.41398 -9.05097 -8.53502 -8.28502 -7.79679 -6.14035 -4.23317 3.21490 3.29811 3.31839 3.36972 4.12765 4.36945 4.51820 4.58782 4.64211 4.77059 5.10515 5.17441 5.24071 5.27840 5.31631 5.34607 5.37214 5.43057 5.44823 5.49967 5.63395 5.69997 5.74764 5.79444 5.88758 5.92686 6.07757 6.09811 6.13226 6.18199 6.20424 6.25984 6.35340 6.36512 6.40906 6.41856 6.50203 6.58514 6.62078 6.66564 6.73208 6.99994 7.14467 7.20934 7.34431 7.45005 7.56236 7.60522 7.71687 7.88595 8.16609 8.66851 8.76614 9.12765 9.44510 10.91157 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.004864 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.097482 B = 5754.797773 C = 6996.081064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.047 0.953 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.474 3.526 15 O -0.555 6.555 16 C 0.078 3.922 17 H 0.091 0.909 18 N -0.820 5.820 19 C -0.032 4.032 20 C -0.104 4.104 21 C -0.084 4.084 22 C -0.109 4.109 23 C -0.081 4.081 24 C -0.107 4.107 25 C -0.086 4.086 26 C -0.105 4.105 27 C -0.090 4.090 28 C -0.121 4.121 29 H 0.048 0.952 30 H 0.021 0.979 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.388 0.612 36 H 0.347 0.653 37 H 0.340 0.660 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.074 0.926 50 H 0.056 0.944 51 H 0.061 0.939 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.396 11.420 12.259 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.257 3.743 15 O -0.434 6.434 16 C -0.038 4.038 17 H 0.109 0.891 18 N -0.349 5.349 19 C -0.032 4.032 20 C -0.141 4.141 21 C -0.102 4.102 22 C -0.147 4.147 23 C -0.099 4.099 24 C -0.145 4.145 25 C -0.105 4.105 26 C -0.143 4.143 27 C -0.127 4.127 28 C -0.159 4.159 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.221 0.779 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.093 0.907 50 H 0.075 0.925 51 H 0.080 0.920 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.812 11.663 12.084 17.470 hybrid contribution 1.397 -0.716 -0.775 1.751 sum -3.415 10.946 11.309 16.105 Atomic orbital electron populations 1.21817 0.98465 0.97898 1.01016 1.21933 0.92505 1.00011 1.02197 1.18749 0.94146 0.89066 0.81287 0.93525 1.21256 0.90749 1.38796 1.06162 0.92114 1.24874 0.98460 0.94840 0.95437 1.69902 1.34990 1.37736 1.09356 0.86448 0.85085 0.77782 0.78129 1.19720 1.20900 1.20919 1.46710 1.14782 1.55423 1.18332 1.21556 0.82924 0.79319 0.90464 1.90657 1.51600 1.60544 1.40624 1.21630 0.90131 0.96606 0.95436 0.89091 1.59201 1.03094 1.21395 1.51191 1.20262 0.94690 0.92156 0.96136 1.21569 0.99802 0.94739 0.98018 1.21021 0.95582 0.96356 0.97244 1.21546 0.95157 0.99469 0.98485 1.20970 0.99387 0.94917 0.94673 1.21552 0.95497 1.00020 0.97391 1.21073 0.95285 0.96342 0.97775 1.21521 1.00263 0.97971 0.94527 1.21430 1.01092 0.94368 0.95820 1.21852 0.93900 0.96851 1.03300 0.93249 0.95966 0.94504 0.88363 0.95159 0.92668 0.77946 0.83827 0.84796 0.91424 0.91810 0.91646 0.92459 0.91684 0.91301 0.92515 0.92217 0.91735 0.92194 0.92546 0.90721 0.92479 0.92029 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.52 37.16 0.32 -2.64 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.34 7.58 -51.93 -0.39 0.94 16 5 C -0.53 -13.65 8.73 -34.44 -0.30 -13.95 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.45 11.29 55.43 0.63 -23.83 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.70 -13.82 3.71 -54.94 -0.20 -14.02 16 14 C 0.47 8.66 3.97 -10.98 -0.04 8.62 16 15 O -0.55 -11.94 13.09 5.56 0.07 -11.87 16 16 C 0.08 1.10 2.51 -68.87 -0.17 0.92 16 17 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 18 N -0.82 -10.71 8.16 -5.66 -0.05 -10.76 16 19 C -0.03 -0.40 0.36 -154.51 -0.06 -0.46 16 20 C -0.10 -1.43 3.88 -26.73 -0.10 -1.53 16 21 C -0.08 -1.01 3.19 -90.62 -0.29 -1.30 16 22 C -0.11 -1.35 5.19 -26.73 -0.14 -1.49 16 23 C -0.08 -0.98 3.19 -90.64 -0.29 -1.27 16 24 C -0.11 -1.11 5.19 -26.73 -0.14 -1.25 16 25 C -0.09 -0.88 3.19 -90.62 -0.29 -1.17 16 26 C -0.11 -1.10 5.19 -26.73 -0.14 -1.24 16 27 C -0.09 -1.01 4.32 -26.73 -0.12 -1.12 16 28 C -0.12 -1.62 3.49 -26.76 -0.09 -1.71 16 29 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 32 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.39 6.85 7.40 -40.82 -0.30 6.55 16 36 H 0.35 4.80 6.75 -39.30 -0.27 4.53 16 37 H 0.34 4.38 9.06 -39.29 -0.36 4.03 16 38 H 0.07 1.16 7.00 -51.93 -0.36 0.80 16 39 H 0.06 0.86 6.67 -51.93 -0.35 0.51 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.87 7.61 -51.93 -0.39 0.48 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.08 1.37 5.94 -51.93 -0.31 1.06 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -27.51 368.51 -10.47 -37.98 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -9.20 Total: 16.27 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.25 Total: -14.71 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.38 Total: -48.60 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.07 Total: -11.87 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.51 -10.47 -37.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.844 kcal (2) G-P(sol) polarization free energy of solvation -27.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds