Wall clock time and date at job start Tue Mar 31 2020 12:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46580 * 2 1 4 4 N 1.46904 * 109.46811 * 185.12298 * 3 2 1 5 5 C 1.46898 * 111.00418 * 287.61368 * 4 3 2 6 6 C 1.52996 * 109.47222 * 157.80653 * 5 4 3 7 7 O 1.42900 * 109.47063 * 67.83464 * 6 5 4 8 8 C 1.42896 * 113.99682 * 180.02562 * 7 6 5 9 9 C 1.46905 * 110.99774 * 163.66208 * 4 3 2 10 10 C 1.50701 * 109.47095 * 288.79789 * 9 4 3 11 11 C 1.38286 * 119.92110 * 90.00156 * 10 9 4 12 12 C 1.38107 * 120.07087 * 180.02562 * 11 10 9 13 13 C 1.38904 * 119.92744 * 0.02562 * 12 11 10 14 14 N 1.39672 * 120.07656 * 179.97438 * 13 12 11 15 15 C 1.46503 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.46506 * 120.00341 * 179.97438 * 14 13 12 17 17 C 1.50693 * 109.47138 * 89.99736 * 16 14 13 18 18 H 1.08001 * 120.00043 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99880 * 179.97438 * 17 16 14 20 20 N 1.31506 * 120.00055 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99873 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47153 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46774 * 120.00173 * 21 19 17 24 24 H 1.48492 * 109.47158 * 240.00445 * 21 19 17 25 25 C 1.38914 * 119.85056 * 0.25029 * 13 12 11 26 26 C 1.38104 * 119.92565 * 359.49471 * 25 13 12 27 27 H 1.09002 * 109.47247 * 60.00285 * 1 2 3 28 28 H 1.09009 * 109.46509 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47334 * 299.99633 * 1 2 3 30 30 H 1.09003 * 109.47417 * 240.00515 * 2 1 3 31 31 H 1.09002 * 109.46890 * 120.00124 * 2 1 3 32 32 H 1.09003 * 109.47340 * 65.12810 * 3 2 1 33 33 H 1.08994 * 109.47559 * 305.12416 * 3 2 1 34 34 H 1.09004 * 109.47322 * 277.81012 * 5 4 3 35 35 H 1.09009 * 109.47041 * 37.80528 * 5 4 3 36 36 H 1.09004 * 109.47026 * 187.83602 * 6 5 4 37 37 H 1.09000 * 109.46902 * 307.82845 * 6 5 4 38 38 H 1.09002 * 109.47239 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.47278 * 299.99578 * 8 7 6 40 40 H 1.08999 * 109.47724 * 59.99431 * 8 7 6 41 41 H 1.08998 * 109.46818 * 168.79853 * 9 4 3 42 42 H 1.08994 * 109.47234 * 48.79821 * 9 4 3 43 43 H 1.07998 * 119.96806 * 0.04123 * 11 10 9 44 44 H 1.08006 * 120.03643 * 179.97438 * 12 11 10 45 45 H 1.09000 * 109.47106 * 269.99733 * 15 14 13 46 46 H 1.09002 * 109.46684 * 30.00184 * 15 14 13 47 47 H 1.09002 * 109.46703 * 150.00048 * 15 14 13 48 48 H 1.08995 * 109.47384 * 210.00072 * 16 14 13 49 49 H 1.08998 * 109.46475 * 329.99907 * 16 14 13 50 50 H 0.97005 * 120.00370 * 179.97438 * 20 19 17 51 51 H 1.08002 * 120.03839 * 179.72506 * 25 13 12 52 52 H 1.07997 * 119.96868 * 180.24941 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4444 -0.1237 5 6 4.1379 0.9914 1.1215 6 6 5.5478 0.4800 0.8190 7 8 6.3752 1.5736 0.4174 8 6 7.7203 1.2021 0.1095 9 6 3.9974 2.7721 -0.5131 10 6 3.6274 3.0445 -1.9484 11 6 2.4248 3.6588 -2.2461 12 6 2.0824 3.9094 -3.5604 13 6 2.9474 3.5433 -4.5837 14 7 2.6040 3.7947 -5.9140 15 6 1.3301 4.4449 -6.2314 16 6 3.5177 3.4084 -6.9921 17 6 3.2016 2.0046 -7.4395 18 1 2.4000 1.4552 -6.9683 19 6 3.9351 1.4219 -8.4512 20 7 4.9109 2.0909 -9.0253 21 14 3.5437 -0.3186 -9.0054 22 1 2.4102 -0.8495 -8.2063 23 1 3.1732 -0.3086 -10.4434 24 1 4.7362 -1.1811 -8.8074 25 6 4.1521 2.9212 -4.2814 26 6 4.4907 2.6783 -2.9647 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7535 1.9292 0.9324 33 1 1.6036 1.9822 -0.8405 34 1 4.1960 1.8235 1.8233 35 1 3.5459 0.1876 1.5593 36 1 5.9659 0.0171 1.7129 37 1 5.5028 -0.2558 0.0161 38 1 8.2832 2.0876 -0.1860 39 1 8.1838 0.7540 0.9884 40 1 7.7202 0.4815 -0.7083 41 1 5.0816 2.8026 -0.4052 42 1 3.5470 3.5297 0.1282 43 1 1.7526 3.9431 -1.4500 44 1 1.1428 4.3888 -3.7923 45 1 0.5589 3.6866 -6.3665 46 1 1.0477 5.1090 -5.4144 47 1 1.4361 5.0229 -7.1494 48 1 3.3989 4.0929 -7.8319 49 1 4.5451 3.4518 -6.6305 50 1 5.4273 1.6809 -9.7368 51 1 4.8249 2.6312 -5.0749 52 1 5.4289 2.1983 -2.7287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231818137.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:28 Heat of formation + Delta-G solvation = -14.151831 kcal Electronic energy + Delta-G solvation = -27741.023737 eV Core-core repulsion = 24126.586053 eV Total energy + Delta-G solvation = -3614.437684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.28985 -38.33882 -37.07667 -35.44384 -33.30292 -32.65508 -30.82623 -30.34111 -28.98797 -27.76327 -26.56276 -26.29152 -24.88258 -23.58557 -22.44361 -21.72359 -21.47008 -20.39058 -19.47242 -16.80434 -16.51906 -16.36406 -16.25224 -15.81361 -15.12694 -15.05152 -14.75788 -14.43352 -14.31179 -14.24482 -13.72254 -13.59691 -13.17068 -12.95900 -12.79636 -12.69700 -12.24514 -12.12093 -12.07414 -11.91181 -11.67971 -11.60960 -11.44387 -11.39646 -11.25683 -11.18098 -10.87825 -10.72536 -10.66903 -10.58406 -10.34540 -10.17566 -9.82593 -9.68254 -9.61588 -8.74000 -8.47162 -8.17919 -8.12156 -6.39176 -5.96582 -4.13129 2.21016 2.33385 3.27760 3.35686 3.41314 3.71011 4.00353 4.22239 4.45305 4.71462 4.91041 4.98039 5.04437 5.15608 5.19980 5.25178 5.29060 5.33343 5.35789 5.42031 5.50669 5.52786 5.56215 5.64100 5.66109 5.67836 5.78949 5.84030 5.85833 5.89618 6.03073 6.09729 6.19892 6.20329 6.28641 6.31371 6.34500 6.51958 6.53866 6.74220 7.00343 7.07180 7.11189 7.22226 7.25933 7.33086 7.36507 7.50692 7.71225 7.85431 8.20577 8.33459 8.56324 8.96490 9.53547 10.99295 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.003456 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.119779 B = 8100.615184 C = 8632.010402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.049 3.951 4 N -0.529 5.529 5 C 0.054 3.946 6 C 0.066 3.934 7 O -0.385 6.385 8 C 0.031 3.969 9 C 0.102 3.898 10 C -0.158 4.158 11 C -0.072 4.072 12 C -0.222 4.222 13 C 0.239 3.761 14 N -0.618 5.618 15 C 0.101 3.899 16 C 0.250 3.750 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.895 3.105 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.188 4.188 26 C -0.050 4.050 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.102 0.898 42 H 0.026 0.974 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.039 0.961 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.029 0.971 49 H 0.035 0.965 50 H 0.263 0.737 51 H 0.130 0.870 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 -0.626 20.554 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.079 4.079 4 N -0.253 5.253 5 C -0.074 4.074 6 C -0.011 4.011 7 O -0.304 6.304 8 C -0.066 4.066 9 C -0.024 4.024 10 C -0.161 4.161 11 C -0.091 4.091 12 C -0.245 4.245 13 C 0.133 3.867 14 N -0.324 5.324 15 C -0.043 4.043 16 C 0.130 3.870 17 C -0.567 4.567 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.211 4.211 26 C -0.069 4.069 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.120 0.880 42 H 0.044 0.956 43 H 0.121 0.879 44 H 0.129 0.871 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.072 0.928 51 H 0.147 0.853 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.791 -0.731 19.790 19.884 hybrid contribution -0.327 -0.804 0.112 0.876 sum -2.118 -1.535 19.902 20.073 Atomic orbital electron populations 1.21734 0.95936 1.01496 1.01698 1.21517 0.95130 0.96783 1.02234 1.22256 0.87971 0.97098 1.00527 1.62027 1.05135 1.27686 1.30426 1.22174 0.93622 1.00038 0.91598 1.22592 0.90287 0.89665 0.98518 1.87867 1.21243 1.33325 1.87955 1.22721 0.83499 1.01367 0.98985 1.21136 1.01707 0.87272 0.92288 1.19199 0.96442 1.06284 0.94191 1.20515 0.95470 0.98091 0.95053 1.20495 1.01094 1.10681 0.92234 1.17913 0.92701 0.91652 0.84463 1.47053 1.19827 1.62056 1.03447 1.21435 0.86568 0.96309 0.99958 1.19279 0.88754 0.95105 0.83879 1.21626 1.17245 0.99548 1.18277 0.92243 1.24952 0.94913 0.98031 0.96168 1.69938 1.20806 1.37339 1.25443 0.86486 0.78410 0.84524 0.78335 1.19728 1.20999 1.20857 1.20888 0.97789 1.05576 0.96828 1.20617 0.98224 0.96450 0.91609 0.92440 0.92809 0.93203 0.90924 0.92751 0.95609 0.89680 0.94130 0.89766 0.93581 0.92214 0.89760 0.94608 0.93859 0.87965 0.95617 0.87942 0.87149 0.94237 0.92908 0.92170 0.95318 0.94671 0.92766 0.85258 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.29 5.93 -26.73 -0.16 -1.44 16 3 C 0.05 0.59 4.79 -3.82 -0.02 0.57 16 4 N -0.53 -6.79 4.32 -236.07 -1.02 -7.81 16 5 C 0.05 0.56 5.37 -3.83 -0.02 0.54 16 6 C 0.07 0.68 6.25 37.16 0.23 0.91 16 7 O -0.38 -4.52 7.93 -35.23 -0.28 -4.80 16 8 C 0.03 0.29 11.01 101.05 1.11 1.40 16 9 C 0.10 1.43 4.92 -4.97 -0.02 1.41 16 10 C -0.16 -2.60 5.07 -104.59 -0.53 -3.13 16 11 C -0.07 -1.17 8.05 -39.61 -0.32 -1.49 16 12 C -0.22 -3.99 9.21 -39.38 -0.36 -4.35 16 13 C 0.24 4.99 6.55 -83.79 -0.55 4.44 16 14 N -0.62 -13.56 2.99 -181.00 -0.54 -14.10 16 15 C 0.10 1.83 10.23 59.85 0.61 2.44 16 16 C 0.25 6.38 4.95 -5.19 -0.03 6.35 16 17 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 18 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C -0.19 -3.95 9.20 -39.38 -0.36 -4.32 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.52 6.72 -51.93 -0.35 0.17 16 32 H 0.03 0.28 8.05 -51.93 -0.42 -0.13 16 33 H 0.08 1.15 5.31 -51.93 -0.28 0.87 16 34 H 0.04 0.42 7.96 -51.93 -0.41 0.01 16 35 H 0.08 0.75 6.32 -51.92 -0.33 0.42 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 1.48 5.09 -51.93 -0.26 1.22 16 42 H 0.03 0.35 8.00 -51.93 -0.42 -0.07 16 43 H 0.10 1.43 7.57 -52.49 -0.40 1.03 16 44 H 0.11 1.80 6.14 -52.48 -0.32 1.47 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.81 6.20 -51.93 -0.32 0.49 16 47 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 48 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 49 H 0.04 0.95 6.21 -51.93 -0.32 0.63 16 50 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 51 H 0.13 2.99 6.15 -52.49 -0.32 2.66 16 52 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -29.80 406.46 -10.02 -39.82 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -9.17 Total: 1.81 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -0.85 Total: -12.43 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.83 Total: -47.12 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.28 Total: -4.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.80 -10.02 -39.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231818137.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.664 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds