Wall clock time and date at job start Tue Mar 31 2020 12:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00241 * 2 1 4 4 N 1.46504 * 109.47013 * 124.67323 * 3 2 1 5 5 C 1.33298 * 117.92025 * 311.88461 * 4 3 2 6 6 O 1.21279 * 118.23113 * 2.18283 * 5 4 3 7 7 C 1.50186 * 123.54924 * 182.20459 * 5 4 3 8 8 C 1.53073 * 109.84790 * 342.54573 * 7 5 4 9 9 C 1.53332 * 108.42381 * 48.84821 * 8 7 5 10 10 C 1.45884 * 117.91668 * 131.88028 * 4 3 2 11 11 C 1.53249 * 109.50679 * 281.01685 * 10 4 3 12 12 C 1.53110 * 109.11095 * 61.85804 * 11 10 4 13 13 C 1.53028 * 109.29553 * 57.79647 * 12 11 10 14 14 N 1.46846 * 109.54584 * 300.93479 * 13 12 11 15 15 C 1.46901 * 111.00416 * 185.75063 * 14 13 12 16 16 H 1.08997 * 109.46680 * 61.55978 * 15 14 13 17 17 C 1.50698 * 109.46933 * 301.56128 * 15 14 13 18 18 H 1.08001 * 119.99842 * 0.02562 * 17 15 14 19 19 C 1.37878 * 119.99894 * 180.02562 * 17 15 14 20 20 N 1.31509 * 119.99791 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00015 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47336 * 59.99787 * 21 19 17 23 23 H 1.48494 * 109.47431 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47091 * 299.99970 * 21 19 17 25 25 C 1.53003 * 109.47179 * 181.56162 * 15 14 13 26 26 C 1.53005 * 109.46989 * 293.88413 * 25 15 14 27 27 C 1.46837 * 111.19585 * 61.64960 * 14 13 12 28 28 H 1.07998 * 120.00599 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00235 * 359.97438 * 1 2 3 30 30 H 1.07996 * 119.99671 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47049 * 4.68147 * 3 2 1 32 32 H 1.09003 * 109.47542 * 244.67898 * 3 2 1 33 33 H 1.08994 * 109.40660 * 222.43004 * 7 5 4 34 34 H 1.09001 * 109.34230 * 102.61766 * 7 5 4 35 35 H 1.09005 * 109.67357 * 289.11882 * 8 7 5 36 36 H 1.09001 * 109.67391 * 168.58922 * 8 7 5 37 37 H 1.08994 * 109.60642 * 172.53776 * 9 8 7 38 38 H 1.08999 * 109.59788 * 52.04885 * 9 8 7 39 39 H 1.08998 * 109.53260 * 301.96939 * 11 10 4 40 40 H 1.09003 * 109.58779 * 181.78549 * 11 10 4 41 41 H 1.08998 * 109.49727 * 297.85576 * 12 11 10 42 42 H 1.09000 * 109.49697 * 177.74431 * 12 11 10 43 43 H 1.08998 * 109.46081 * 180.91307 * 13 12 11 44 44 H 1.09006 * 109.45872 * 60.95704 * 13 12 11 45 45 H 0.97007 * 119.99984 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.46970 * 53.88283 * 25 15 14 47 47 H 1.08994 * 109.47181 * 173.88183 * 25 15 14 48 48 H 1.09001 * 109.46882 * 188.53079 * 26 25 15 49 49 H 1.08998 * 109.47137 * 308.53240 * 26 25 15 50 50 H 1.08997 * 109.47088 * 68.53338 * 26 25 15 51 51 H 1.08994 * 109.46922 * 58.06547 * 27 14 13 52 52 H 1.09000 * 109.47120 * 178.07244 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9882 1.3350 1.1360 5 6 2.5160 0.9918 2.3343 6 8 1.3597 0.6348 2.4146 7 6 3.3383 1.0235 3.5907 8 6 4.8268 1.0696 3.2365 9 6 5.0418 2.1678 2.1883 10 6 4.3672 1.7385 0.8837 11 6 5.1418 0.5628 0.2785 12 6 4.5057 0.1794 -1.0604 13 6 4.5129 1.3949 -1.9901 14 7 3.7647 2.4942 -1.3672 15 6 3.6345 3.6310 -2.2886 16 1 3.0807 3.3193 -3.1741 17 6 5.0052 4.1074 -2.6953 18 1 5.8849 3.6147 -2.3083 19 6 5.1361 5.1722 -3.5613 20 7 4.0648 5.7718 -4.0328 21 14 6.8350 5.7623 -4.0660 22 1 7.5618 4.6581 -4.7426 23 1 6.7036 6.9114 -4.9972 24 1 7.5904 6.1860 -2.8597 25 6 2.8850 4.7686 -1.5923 26 6 1.4437 4.3357 -1.3159 27 6 4.3856 2.9098 -0.1031 28 1 -0.5401 -0.9352 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3582 2.1318 0.0839 32 1 2.6258 1.4000 -0.9289 33 1 3.1337 0.1299 4.1801 34 1 3.0766 1.9082 4.1712 35 1 5.1370 0.1074 2.8288 36 1 5.4097 1.2953 4.1295 37 1 6.1094 2.3080 2.0192 38 1 4.5992 3.1000 2.5394 39 1 5.1016 -0.2885 0.9581 40 1 6.1804 0.8529 0.1188 41 1 3.4787 -0.1462 -0.8952 42 1 5.0761 -0.6303 -1.5155 43 1 4.0459 1.1294 -2.9385 44 1 5.5411 1.7102 -2.1676 45 1 4.1568 6.5212 -4.6418 46 1 3.3797 5.0069 -0.6507 47 1 2.8831 5.6492 -2.2346 48 1 0.8693 5.1911 -0.9602 49 1 0.9966 3.9541 -2.2337 50 1 1.4385 3.5537 -0.5567 51 1 5.4159 3.2138 -0.2872 52 1 3.8289 3.7475 0.3169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167767.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:42 Heat of formation + Delta-G solvation = 17.050091 kcal Electronic energy + Delta-G solvation = -30837.193782 eV Core-core repulsion = 27224.109114 eV Total energy + Delta-G solvation = -3613.084668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.13478 -38.47235 -36.27121 -34.90728 -33.79777 -32.04080 -31.99161 -30.62595 -30.26291 -26.97128 -26.69415 -25.40317 -24.16896 -22.76838 -22.31832 -21.74453 -20.30928 -19.50873 -19.21665 -17.66946 -16.52448 -16.43553 -15.80686 -15.48089 -14.90955 -14.70740 -14.44577 -14.16852 -13.99576 -13.85677 -13.67657 -13.24690 -13.11096 -12.83857 -12.66870 -12.42563 -12.08288 -11.92229 -11.86635 -11.45427 -11.39841 -11.25652 -11.19234 -11.03259 -10.92086 -10.80018 -10.76872 -10.59225 -10.40466 -10.28036 -10.23087 -9.85098 -9.63960 -9.58159 -9.40520 -9.11685 -8.45195 -8.43832 -8.10694 -7.03864 -6.06449 -4.22276 2.77427 3.06325 3.20938 3.27464 3.29088 3.65128 4.31066 4.54861 4.68091 4.79879 4.84529 4.95798 5.15294 5.17715 5.33211 5.38351 5.43139 5.53202 5.65960 5.70354 5.70921 5.76634 5.85215 5.88862 5.93186 6.08916 6.12486 6.15111 6.18932 6.21610 6.29728 6.34715 6.38039 6.52165 6.53786 6.58664 6.63650 6.74125 6.82762 7.01799 7.04709 7.13464 7.16696 7.29871 7.39476 7.50283 7.65497 7.78416 8.00459 8.10861 8.13797 8.30375 8.63626 8.85217 9.45713 10.91213 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.005070 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.137730 B = 5521.015108 C = 6146.043225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.139 4.139 3 C 0.075 3.925 4 N -0.568 5.568 5 C 0.503 3.497 6 O -0.553 6.553 7 C -0.135 4.135 8 C -0.122 4.122 9 C -0.126 4.126 10 C 0.170 3.830 11 C -0.122 4.122 12 C -0.136 4.136 13 C 0.051 3.949 14 N -0.519 5.519 15 C 0.211 3.789 16 H 0.044 0.956 17 C -0.546 4.546 18 H 0.056 0.944 19 C 0.071 3.929 20 N -0.882 5.882 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.115 4.115 26 C -0.150 4.150 27 C 0.053 3.947 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.187 0.813 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.263 0.737 46 H 0.034 0.966 47 H 0.094 0.906 48 H 0.026 0.974 49 H 0.043 0.957 50 H 0.053 0.947 51 H 0.056 0.944 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 -8.567 10.276 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.158 4.158 3 C -0.045 4.045 4 N -0.298 5.298 5 C 0.291 3.709 6 O -0.432 6.432 7 C -0.175 4.175 8 C -0.160 4.160 9 C -0.164 4.164 10 C 0.084 3.916 11 C -0.161 4.161 12 C -0.174 4.174 13 C -0.077 4.077 14 N -0.242 5.242 15 C 0.106 3.894 16 H 0.062 0.938 17 C -0.585 4.585 18 H 0.074 0.926 19 C -0.132 4.132 20 N -0.520 5.520 21 Si 0.715 3.285 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.154 4.154 26 C -0.207 4.207 27 C -0.076 4.076 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.201 0.799 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.113 0.887 48 H 0.045 0.955 49 H 0.062 0.938 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.872 -8.722 10.274 13.505 hybrid contribution 1.774 0.707 -0.364 1.944 sum 2.646 -8.016 9.909 13.017 Atomic orbital electron populations 1.23416 0.95913 1.00465 1.02857 1.23051 0.96101 0.98371 0.98249 1.22833 0.93575 0.93323 0.94776 1.47329 1.10197 1.64760 1.07555 1.20107 0.88084 0.77666 0.85034 1.90723 1.18409 1.48062 1.86030 1.21659 0.95169 1.04437 0.96239 1.21680 0.95303 0.99769 0.99219 1.21915 1.01497 0.98913 0.94069 1.20585 0.81238 0.94928 0.94854 1.22026 0.99148 0.97617 0.97301 1.21970 1.02187 0.98022 0.95193 1.22016 0.98358 0.90678 0.96643 1.62382 1.45875 1.10599 1.05349 1.19395 0.94911 0.85235 0.89885 0.93812 1.21604 0.92893 1.15898 1.28055 0.92553 1.24887 0.96320 0.96284 0.95735 1.69853 1.27867 1.22481 1.31798 0.86744 0.84915 0.78364 0.78474 1.20367 1.21272 1.20389 1.21699 0.92428 1.01893 0.99345 1.21980 0.98483 0.99558 1.00722 1.22346 0.99646 0.95190 0.90395 0.89890 0.89283 0.89026 0.91981 0.79852 0.89066 0.88967 0.91129 0.91029 0.89993 0.90863 0.92201 0.91265 0.90182 0.92300 0.91123 0.93534 0.92729 0.94712 0.88743 0.95531 0.93816 0.92814 0.92620 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 13.60 29.02 0.39 -2.63 16 2 C -0.14 -2.27 6.71 -36.03 -0.24 -2.51 16 3 C 0.08 1.25 3.54 -5.19 -0.02 1.24 16 4 N -0.57 -8.59 2.56 -160.99 -0.41 -9.00 16 5 C 0.50 7.86 7.18 -11.89 -0.09 7.77 16 6 O -0.55 -10.50 14.40 5.56 0.08 -10.42 16 7 C -0.14 -1.55 6.03 -28.09 -0.17 -1.72 16 8 C -0.12 -1.18 5.98 -26.52 -0.16 -1.33 16 9 C -0.13 -1.40 4.73 -26.55 -0.13 -1.52 16 10 C 0.17 2.31 0.75 -131.93 -0.10 2.21 16 11 C -0.12 -1.55 4.73 -26.55 -0.13 -1.67 16 12 C -0.14 -1.87 5.60 -26.66 -0.15 -2.02 16 13 C 0.05 0.85 4.58 -3.84 -0.02 0.84 16 14 N -0.52 -9.26 1.22 -228.01 -0.28 -9.54 16 15 C 0.21 4.62 1.83 -68.86 -0.13 4.49 16 16 H 0.04 1.09 8.11 -51.93 -0.42 0.67 16 17 C -0.55 -13.15 7.19 -34.44 -0.25 -13.39 16 18 H 0.06 1.35 5.84 -52.49 -0.31 1.04 16 19 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 20 N -0.88 -23.37 11.29 55.43 0.63 -22.75 16 21 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 C -0.12 -2.51 4.92 -26.73 -0.13 -2.64 16 26 C -0.15 -2.91 9.73 37.16 0.36 -2.55 16 27 C 0.05 0.87 3.41 -3.77 -0.01 0.86 16 28 H 0.08 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.09 1.46 7.84 -52.48 -0.41 1.05 16 30 H 0.09 1.44 7.42 -52.49 -0.39 1.06 16 31 H 0.06 1.15 5.03 -51.93 -0.26 0.89 16 32 H 0.19 3.14 2.38 -84.95 -0.20 2.94 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.68 6.42 -51.93 -0.33 0.34 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 38 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 39 H 0.06 0.70 6.62 -51.93 -0.34 0.36 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.16 4.12 -51.93 -0.21 0.95 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 44 H 0.05 0.84 6.58 -51.93 -0.34 0.50 16 45 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 46 H 0.03 0.74 5.85 -51.93 -0.30 0.43 16 47 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.04 0.86 8.10 -51.93 -0.42 0.44 16 50 H 0.05 1.00 4.50 -51.93 -0.23 0.77 16 51 H 0.06 0.98 7.02 -51.93 -0.36 0.62 16 52 H 0.08 1.47 5.74 -51.93 -0.30 1.17 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -26.83 363.19 -9.09 -35.92 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.51 Total: 8.33 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.05 Total: -12.89 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.06 Total: -41.29 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.83 -9.09 -35.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167767.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.969 kcal (2) G-P(sol) polarization free energy of solvation -26.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds