Wall clock time and date at job start Tue Mar 31 2020 12:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47085 * 2 1 4 4 H 1.09000 * 109.47160 * 183.09239 * 3 2 1 5 5 C 1.50692 * 109.47344 * 303.10054 * 3 2 1 6 6 H 1.08003 * 120.00182 * 115.71027 * 5 3 2 7 7 C 1.37874 * 120.00163 * 295.70502 * 5 3 2 8 8 N 1.31513 * 119.99852 * 352.95420 * 7 5 3 9 9 Si 1.86801 * 120.00354 * 172.95042 * 7 5 3 10 10 H 1.48502 * 109.47073 * 270.00464 * 9 7 5 11 11 H 1.48500 * 109.46835 * 30.00278 * 9 7 5 12 12 H 1.48499 * 109.47128 * 150.00214 * 9 7 5 13 13 N 1.46903 * 109.46868 * 63.10369 * 3 2 1 14 14 C 1.48534 * 110.99865 * 176.72554 * 13 3 2 15 15 C 1.54327 * 104.66966 * 200.80369 * 14 13 3 16 16 H 1.08999 * 111.81910 * 262.42668 * 15 14 13 17 17 C 1.54161 * 108.86202 * 138.40382 * 15 14 13 18 18 C 1.54836 * 104.32233 * 223.67405 * 17 15 14 19 19 H 1.09001 * 110.76403 * 279.68555 * 18 17 15 20 20 C 1.50706 * 110.76010 * 156.49869 * 18 17 15 21 21 O 1.21280 * 119.99555 * 359.97438 * 20 18 17 22 22 N 1.34775 * 120.00230 * 180.02562 * 20 18 17 23 23 C 1.46498 * 119.99944 * 179.97438 * 22 20 18 24 24 C 1.53775 * 113.61676 * 254.13246 * 23 22 20 25 25 C 1.53944 * 87.02221 * 220.04904 * 24 23 22 26 26 C 1.53781 * 87.11377 * 25.36250 * 25 24 23 27 27 C 1.54839 * 102.73746 * 38.18483 * 18 17 15 28 28 C 1.54904 * 104.93256 * 23.92216 * 15 14 13 29 29 H 1.08997 * 111.89493 * 237.66041 * 28 15 14 30 30 C 1.48531 * 111.00375 * 61.31432 * 13 3 2 31 31 H 1.09001 * 109.47118 * 185.42763 * 1 2 3 32 32 H 1.08994 * 109.47340 * 305.43047 * 1 2 3 33 33 H 1.09004 * 109.47414 * 65.42646 * 1 2 3 34 34 H 1.09005 * 109.47023 * 240.00343 * 2 1 3 35 35 H 1.08996 * 109.47338 * 120.00426 * 2 1 3 36 36 H 0.96997 * 120.00504 * 355.49122 * 8 7 5 37 37 H 1.08996 * 110.40023 * 319.59994 * 14 13 3 38 38 H 1.09003 * 110.40025 * 82.00477 * 14 13 3 39 39 H 1.08996 * 110.46623 * 342.38930 * 17 15 14 40 40 H 1.09003 * 110.45929 * 104.83994 * 17 15 14 41 41 H 0.97001 * 120.00060 * 359.97438 * 22 20 18 42 42 H 1.09002 * 112.84726 * 25.32984 * 23 22 20 43 43 H 1.09002 * 113.61518 * 334.57390 * 24 23 22 44 44 H 1.09000 * 113.61352 * 105.47042 * 24 23 22 45 45 H 1.09006 * 113.53702 * 270.81096 * 25 24 23 46 46 H 1.09005 * 113.74786 * 139.94644 * 25 24 23 47 47 H 1.09004 * 113.61454 * 220.09192 * 26 25 24 48 48 H 1.08994 * 113.68895 * 89.19532 * 26 25 24 49 49 H 1.09004 * 110.46287 * 80.52802 * 27 18 17 50 50 H 1.08999 * 110.46450 * 203.10482 * 27 18 17 51 51 H 1.08999 * 110.39818 * 277.99108 * 30 13 3 52 52 H 1.09000 * 110.39513 * 40.39591 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1285 1.4430 -0.0554 5 6 1.4759 2.1747 -1.1902 6 1 0.8053 3.0085 -1.0431 7 6 1.8159 1.7804 -2.4668 8 7 2.7366 0.8588 -2.6470 9 14 0.9688 2.5551 -3.9405 10 1 -0.2413 1.7670 -4.2866 11 1 0.5745 3.9479 -3.6090 12 1 1.8999 2.5662 -5.0973 13 7 1.6124 2.1130 1.2352 14 6 2.1560 3.4934 1.3071 15 6 2.0992 3.8583 2.8055 16 1 1.2122 4.4442 3.0465 17 6 3.3960 4.5991 3.1876 18 6 3.8109 3.9720 4.5411 19 1 3.2376 4.4063 5.3601 20 6 5.2895 4.1423 4.7778 21 8 5.9741 4.7104 3.9535 22 7 5.8512 3.6624 5.9051 23 6 7.2885 3.8275 6.1349 24 6 8.0951 2.5316 5.9485 25 6 8.9155 2.9601 7.1786 26 6 7.6855 3.7710 7.6195 27 6 3.4545 2.4775 4.3484 28 6 2.1127 2.4989 3.5481 29 1 1.2407 2.3781 4.1908 30 6 2.1765 1.4361 2.4310 31 1 -0.3633 -1.0231 0.0972 32 1 -0.3634 0.5957 0.8373 33 1 -0.3634 0.4274 -0.9346 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.2226 0.5035 -1.8865 37 1 3.1854 3.5155 0.9495 38 1 1.5364 4.1765 0.7260 39 1 4.1674 4.4293 2.4364 40 1 3.2055 5.6662 3.3023 41 1 5.3037 3.2077 6.5642 42 1 7.7067 4.6823 5.6033 43 1 7.5095 1.6261 6.1080 44 1 8.6728 2.5059 5.0246 45 1 9.7797 3.5770 6.9321 46 1 9.1604 2.1379 7.8510 47 1 7.9331 4.7446 8.0427 48 1 6.9870 3.2063 8.2370 49 1 4.2353 1.9695 3.7823 50 1 3.3064 1.9936 5.3138 51 1 1.5723 0.5688 2.6969 52 1 3.2091 1.1392 2.2476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:15 Heat of formation + Delta-G solvation = -30.341754 kcal Electronic energy + Delta-G solvation = -28137.427924 eV Core-core repulsion = 24522.288192 eV Total energy + Delta-G solvation = -3615.139732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.56304 -39.39599 -38.13573 -35.95842 -33.67940 -33.06048 -31.10369 -30.09803 -28.83648 -26.03224 -25.92604 -25.47926 -24.72440 -23.45355 -22.07873 -21.21500 -20.42829 -19.71104 -19.28451 -18.50404 -17.10547 -16.84289 -16.56990 -16.27452 -15.50433 -15.05821 -14.70916 -14.29244 -14.07965 -13.83416 -13.61708 -13.17956 -13.09834 -12.87282 -12.71651 -12.55007 -12.43605 -11.90955 -11.82692 -11.65729 -11.51005 -11.30104 -11.14713 -11.06689 -11.00991 -10.78654 -10.75548 -10.60813 -10.51342 -10.31749 -10.25811 -10.06776 -10.01732 -9.84671 -9.69899 -9.52278 -9.21405 -8.40209 -8.32922 -7.34946 -6.27663 -3.97374 2.54498 3.02405 3.47737 3.50249 3.66219 4.14602 4.26030 4.36727 4.49030 4.50992 4.54986 4.57450 4.74341 5.01090 5.16635 5.26146 5.30334 5.31490 5.35479 5.41934 5.43831 5.47666 5.48804 5.61107 5.62365 5.65087 5.68081 5.72411 5.84832 5.93265 6.01093 6.12232 6.22430 6.27955 6.32477 6.33691 6.40813 6.46688 6.52632 6.58598 6.69771 6.75053 6.93410 7.06975 7.23117 7.33327 7.35467 7.53849 7.81805 8.06465 8.12938 8.37864 8.65199 8.93500 9.71308 11.08295 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.002777 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.647147 B =10082.019646 C =10242.441350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 C 0.195 3.805 4 H -0.011 1.011 5 C -0.575 4.575 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.495 5.495 14 C 0.057 3.943 15 C -0.097 4.097 16 H 0.080 0.920 17 C -0.098 4.098 18 C -0.115 4.115 19 H 0.099 0.901 20 C 0.522 3.478 21 O -0.536 6.536 22 N -0.724 5.724 23 C 0.121 3.879 24 C -0.155 4.155 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.106 4.106 28 C -0.088 4.088 29 H 0.085 0.915 30 C 0.037 3.963 31 H 0.017 0.983 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.269 0.731 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.400 0.600 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.069 0.931 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 3.937 22.547 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.151 4.151 3 C 0.088 3.912 4 H 0.006 0.994 5 C -0.613 4.613 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.219 5.219 14 C -0.071 4.071 15 C -0.116 4.116 16 H 0.099 0.901 17 C -0.136 4.136 18 C -0.136 4.136 19 H 0.118 0.882 20 C 0.309 3.691 21 O -0.411 6.411 22 N -0.376 5.376 23 C 0.016 3.984 24 C -0.194 4.194 25 C -0.177 4.177 26 C -0.185 4.185 27 C -0.144 4.144 28 C -0.107 4.107 29 H 0.103 0.897 30 C -0.092 4.092 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.234 0.766 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.648 4.291 20.233 21.441 hybrid contribution 0.817 -0.290 1.982 2.163 sum 6.465 4.001 22.216 23.480 Atomic orbital electron populations 1.21428 0.96271 0.97507 1.02431 1.21572 0.96539 0.98165 0.98818 1.19551 0.92733 0.91301 0.87589 0.99362 1.21808 1.30737 1.17740 0.91035 0.92689 1.25680 0.96380 0.95941 1.00357 1.70755 1.21971 1.27418 1.35010 0.83586 0.75830 0.75515 0.75566 1.21473 1.21537 1.21308 1.65391 1.53314 1.01117 1.02065 1.22963 0.98447 0.92565 0.93165 1.22582 0.97117 0.95378 0.96542 0.90110 1.22368 0.97332 0.99008 0.94863 1.22344 0.91601 0.98818 1.00865 0.88245 1.20755 0.90267 0.77212 0.80878 1.90703 1.64291 1.41920 1.44208 1.46053 1.09154 1.60070 1.22280 1.22548 0.80516 0.99046 0.96285 1.23466 0.98671 0.98334 0.98901 1.22715 0.96837 1.00207 0.97987 1.23313 0.98170 1.01144 0.95880 1.22815 0.97877 0.93295 1.00386 1.22844 0.96116 0.95522 0.96217 0.89687 1.23144 0.97649 0.96667 0.91741 0.96412 0.93087 0.92210 0.91922 0.96108 0.91983 0.94370 0.90635 0.90022 0.91521 0.76603 0.86952 0.89750 0.90935 0.89830 0.90873 0.90832 0.89678 0.91048 0.91493 0.91274 0.94893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.44 37.15 0.35 -2.27 16 2 C -0.11 -2.65 5.22 -26.73 -0.14 -2.79 16 3 C 0.20 4.87 1.16 -68.87 -0.08 4.79 16 4 H -0.01 -0.31 7.36 -51.93 -0.38 -0.69 16 5 C -0.57 -15.76 6.72 -34.45 -0.23 -15.99 16 6 H 0.05 1.54 7.31 -52.48 -0.38 1.16 16 7 C 0.02 0.57 5.25 -17.82 -0.09 0.48 16 8 N -0.91 -27.35 12.89 55.43 0.71 -26.64 16 9 Si 1.07 25.46 29.91 -169.99 -5.08 20.38 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.49 -10.48 4.47 -223.53 -1.00 -11.48 16 14 C 0.06 1.12 5.31 -2.22 -0.01 1.11 16 15 C -0.10 -1.46 3.87 -88.31 -0.34 -1.80 16 16 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.10 -1.38 5.43 -25.16 -0.14 -1.51 16 18 C -0.11 -1.30 3.29 -89.83 -0.30 -1.60 16 19 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 20 C 0.52 6.61 7.13 -10.98 -0.08 6.53 16 21 O -0.54 -9.12 15.35 5.56 0.09 -9.04 16 22 N -0.72 -6.64 5.36 -53.02 -0.28 -6.92 16 23 C 0.12 1.07 4.21 -67.12 -0.28 0.79 16 24 C -0.15 -1.27 7.89 -25.84 -0.20 -1.47 16 25 C -0.14 -0.86 8.09 -25.83 -0.21 -1.07 16 26 C -0.15 -0.89 7.83 -25.92 -0.20 -1.09 16 27 C -0.11 -1.21 5.85 -24.02 -0.14 -1.35 16 28 C -0.09 -1.22 4.04 -87.18 -0.35 -1.57 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 C 0.04 0.64 4.95 -2.23 -0.01 0.63 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 1.09 7.54 -51.93 -0.39 0.69 16 33 H 0.06 1.43 7.34 -51.93 -0.38 1.05 16 34 H 0.06 1.63 6.29 -51.93 -0.33 1.30 16 35 H 0.02 0.44 6.81 -51.93 -0.35 0.09 16 36 H 0.27 8.06 6.06 -40.82 -0.25 7.81 16 37 H 0.04 0.83 6.98 -51.93 -0.36 0.47 16 38 H 0.08 1.57 7.66 -51.93 -0.40 1.18 16 39 H 0.08 1.40 6.49 -51.93 -0.34 1.06 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.40 2.55 8.71 -40.82 -0.36 2.20 16 42 H 0.11 1.21 7.50 -51.93 -0.39 0.82 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 49 H 0.07 0.96 7.15 -51.93 -0.37 0.59 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.07 1.19 7.59 -51.93 -0.39 0.79 16 52 H 0.03 0.62 7.03 -51.93 -0.37 0.25 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -31.93 390.49 -11.45 -43.38 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -9.31 Total: 2.64 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.46 Total: -18.20 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.57 Total: -45.04 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.93 -11.45 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.035 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds