Wall clock time and date at job start Tue Mar 31 2020 12:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47389 * 2 1 4 4 H 1.09001 * 109.47093 * 55.00203 * 3 2 1 5 5 C 1.50705 * 109.47306 * 174.99641 * 3 2 1 6 6 H 1.07999 * 119.99834 * 120.00132 * 5 3 2 7 7 C 1.37875 * 120.00025 * 300.00440 * 5 3 2 8 8 N 1.31513 * 120.00007 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99756 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47277 * 89.99633 * 9 7 5 11 11 H 1.48506 * 109.46840 * 209.99876 * 9 7 5 12 12 H 1.48501 * 109.46953 * 329.99539 * 9 7 5 13 13 N 1.46903 * 109.47106 * 295.00111 * 3 2 1 14 14 C 1.46859 * 110.99832 * 174.99723 * 13 3 2 15 15 C 1.53142 * 109.44915 * 186.35511 * 14 13 3 16 16 C 1.52548 * 109.34439 * 301.72322 * 15 14 13 17 17 C 1.54128 * 110.07352 * 178.11144 * 16 15 14 18 18 C 1.54587 * 101.65787 * 94.64110 * 17 16 15 19 19 N 1.46821 * 105.49162 * 24.98256 * 18 17 16 20 20 C 1.46496 * 124.36085 * 163.13206 * 19 18 17 21 21 C 1.52993 * 109.47727 * 89.99790 * 20 19 18 22 22 C 1.53005 * 117.49984 * 243.62542 * 21 20 19 23 23 C 1.52995 * 117.50289 * 175.00140 * 21 20 19 24 24 C 1.34573 * 111.27635 * 343.08010 * 19 18 17 25 25 O 1.21284 * 125.03113 * 180.67433 * 24 19 18 26 26 C 1.52602 * 110.46231 * 56.28295 * 16 15 14 27 27 C 1.46848 * 110.99834 * 299.34935 * 13 3 2 28 28 H 1.09003 * 109.47294 * 60.00189 * 1 2 3 29 29 H 1.08999 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47198 * 299.99898 * 1 2 3 31 31 H 1.09003 * 109.47150 * 239.99617 * 2 1 3 32 32 H 1.09008 * 109.47242 * 120.00289 * 2 1 3 33 33 H 0.97001 * 119.99570 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47150 * 66.36092 * 14 13 3 35 35 H 1.08995 * 109.47484 * 306.35295 * 14 13 3 36 36 H 1.09002 * 109.49594 * 61.69344 * 15 14 13 37 37 H 1.08996 * 109.49830 * 181.75352 * 15 14 13 38 38 H 1.09006 * 110.98674 * 212.73321 * 17 16 15 39 39 H 1.09003 * 110.99434 * 336.54300 * 17 16 15 40 40 H 1.08996 * 110.24301 * 143.98802 * 18 17 16 41 41 H 1.09004 * 110.23780 * 265.97985 * 18 17 16 42 42 H 1.09003 * 109.47379 * 210.00093 * 20 19 18 43 43 H 1.09008 * 109.47048 * 329.99376 * 20 19 18 44 44 H 1.09001 * 115.54908 * 29.32679 * 21 20 19 45 45 H 1.08994 * 117.49613 * 359.97438 * 22 21 20 46 46 H 1.09003 * 117.49821 * 145.02000 * 22 21 20 47 47 H 1.09008 * 117.50169 * 214.98024 * 23 21 20 48 48 H 1.09004 * 117.49985 * 359.97438 * 23 21 20 49 49 H 1.09008 * 109.48707 * 183.76808 * 26 16 15 50 50 H 1.09001 * 109.51735 * 63.69941 * 26 16 15 51 51 H 1.09007 * 109.47551 * 293.63973 * 27 13 3 52 52 H 1.08998 * 109.47360 * 53.64901 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3373 2.1733 9 14 6.0049 0.8812 1.3819 10 1 6.4415 2.1140 2.0850 11 1 6.4395 -0.3100 2.1550 12 1 6.6135 0.8415 0.0279 13 7 1.6513 2.0993 -1.2552 14 6 2.0207 3.5206 -1.2418 15 6 1.4614 4.2046 -2.4926 16 6 2.0091 3.5106 -3.7357 17 6 1.4195 4.1561 -5.0050 18 6 2.5143 5.1847 -5.3698 19 7 3.7544 4.6624 -4.7826 20 6 5.0987 5.1058 -5.1599 21 6 5.5154 6.2816 -4.2743 22 6 5.7553 7.6299 -4.9567 23 6 6.9403 6.8157 -4.4333 24 6 3.4971 3.7247 -3.8522 25 8 4.3377 3.1382 -3.2038 26 6 1.6807 2.0207 -3.7032 27 6 2.2328 1.4077 -2.4129 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0605 2.9503 34 1 3.1066 3.6137 -1.2314 35 1 1.6067 3.9952 -0.3521 36 1 0.3735 4.1377 -2.4881 37 1 1.7614 5.2525 -2.4991 38 1 1.2976 3.4179 -5.7978 39 1 0.4739 4.6527 -4.7874 40 1 2.6132 5.2624 -6.4525 41 1 2.2749 6.1581 -4.9414 42 1 5.8028 4.2841 -5.0279 43 1 5.0982 5.4195 -6.2039 44 1 5.0822 6.2935 -3.2741 45 1 5.6167 7.6789 -6.0367 46 1 5.4799 8.5290 -4.4055 47 1 7.4445 7.1793 -3.5378 48 1 7.5811 6.3291 -5.1687 49 1 2.1358 1.5291 -4.5632 50 1 0.5997 1.8852 -3.7368 51 1 3.3172 1.5162 -2.3941 52 1 1.9726 0.3500 -2.3727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176798.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:14 Heat of formation + Delta-G solvation = -25.434331 kcal Electronic energy + Delta-G solvation = -29465.917685 eV Core-core repulsion = 25850.990754 eV Total energy + Delta-G solvation = -3614.926930 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.15868 -39.40906 -38.29052 -37.44108 -35.99931 -34.02906 -32.89783 -31.66088 -30.51929 -28.31343 -27.97189 -26.13988 -24.60681 -23.99011 -23.28781 -22.53465 -22.38067 -21.40780 -20.81570 -19.58541 -18.26524 -17.71624 -17.15722 -16.97103 -16.43162 -16.21028 -15.76960 -15.57297 -15.26619 -15.18099 -14.88343 -14.53506 -14.33957 -14.22614 -14.01834 -13.68838 -13.48738 -13.29805 -13.22576 -13.03554 -12.97050 -12.78740 -12.76363 -12.59791 -12.51405 -12.40345 -12.21756 -11.96713 -11.89975 -11.61348 -11.54376 -11.42382 -11.21880 -10.97446 -10.92915 -10.76517 -10.41708 -10.35979 -9.61743 -8.81550 -8.02442 -6.23187 1.26186 1.27699 1.40304 1.68047 2.08219 2.36888 2.85317 3.12725 3.34873 3.55990 3.62409 3.75104 3.82148 3.94820 4.00433 4.11509 4.17342 4.26269 4.42107 4.47211 4.58626 4.61819 4.67555 4.70577 4.73649 4.75412 4.77257 4.77710 4.85064 4.92310 4.96194 4.97917 5.00522 5.07245 5.12809 5.16084 5.21386 5.22750 5.27473 5.33512 5.38675 5.45261 5.52931 5.56613 5.68211 5.78376 5.82324 6.09845 6.22507 6.27135 6.44669 6.75519 7.00058 7.34130 7.46095 8.90392 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.004800 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.612976 B = 5831.436806 C = 7513.283646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.540 4.540 6 H 0.038 0.962 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.934 3.066 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.515 5.515 14 C 0.058 3.942 15 C -0.079 4.079 16 C -0.088 4.088 17 C -0.112 4.112 18 C 0.102 3.898 19 N -0.620 5.620 20 C 0.160 3.840 21 C -0.190 4.190 22 C -0.149 4.149 23 C -0.182 4.182 24 C 0.508 3.492 25 O -0.566 6.566 26 C -0.083 4.083 27 C 0.049 3.951 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.261 0.739 34 H 0.003 0.997 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.106 0.894 49 H 0.064 0.936 50 H 0.096 0.904 51 H 0.025 0.975 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 13.763 -20.865 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.579 4.579 6 H 0.057 0.943 7 C -0.175 4.175 8 N -0.549 5.549 9 Si 0.761 3.239 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.238 5.238 14 C -0.071 4.071 15 C -0.117 4.117 16 C -0.091 4.091 17 C -0.150 4.150 18 C -0.019 4.019 19 N -0.353 5.353 20 C 0.038 3.962 21 C -0.210 4.210 22 C -0.186 4.186 23 C -0.220 4.220 24 C 0.297 3.703 25 O -0.444 6.444 26 C -0.121 4.121 27 C -0.079 4.079 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.089 0.911 45 H 0.137 0.863 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.125 0.875 49 H 0.083 0.917 50 H 0.114 0.886 51 H 0.043 0.957 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.629 13.367 -20.432 24.850 hybrid contribution 2.715 -0.310 1.318 3.034 sum -1.914 13.057 -19.113 23.226 Atomic orbital electron populations 1.21541 0.95692 0.99855 1.00893 1.21447 0.94964 0.97956 1.00097 1.19020 0.91173 0.91719 0.86833 0.97996 1.22023 0.94660 1.36581 1.04648 0.94332 1.25468 1.00902 0.95357 0.95802 1.69979 1.35646 1.39536 1.09745 0.85937 0.82849 0.77771 0.77311 1.20530 1.19808 1.21308 1.62412 1.57152 1.01348 1.02913 1.21899 0.96930 0.90320 0.97974 1.21383 1.01960 0.97650 0.90692 1.21060 0.91397 0.98063 0.98625 1.22757 0.99163 0.98343 0.94694 1.22378 0.81690 0.97635 1.00202 1.48487 1.07705 1.39284 1.39851 1.20930 0.81987 0.94659 0.98665 1.22637 1.01213 0.96907 1.00195 1.23121 1.00595 0.93335 1.01516 1.23018 0.90840 1.04374 1.03736 1.21365 0.91995 0.78594 0.78357 1.90749 1.54371 1.51739 1.47510 1.21408 1.02412 0.92338 0.95970 1.22066 0.97622 0.97378 0.90867 0.91982 0.93527 0.94808 0.95259 0.92188 0.92998 0.97867 0.93188 0.87998 0.91042 0.88421 0.86291 0.87535 0.90016 0.92726 0.86794 0.91142 0.86275 0.88454 0.89424 0.87534 0.91705 0.88575 0.95715 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.80 71.98 0.71 -4.32 16 2 C -0.11 -5.36 5.06 30.59 0.15 -5.21 16 3 C 0.22 11.83 1.75 44.17 0.08 11.90 16 4 H 0.00 0.13 8.07 -2.39 -0.02 0.11 16 5 C -0.54 -32.59 7.20 25.60 0.18 -32.40 16 6 H 0.04 2.51 5.85 -2.91 -0.02 2.49 16 7 C 0.02 1.44 5.29 84.65 0.45 1.88 16 8 N -0.91 -55.16 11.29 21.45 0.24 -54.91 16 9 Si 0.93 48.87 29.54 68.60 2.03 50.90 16 10 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 13 N -0.51 -22.98 4.08 -875.03 -3.57 -26.55 16 14 C 0.06 2.44 4.89 86.36 0.42 2.86 16 15 C -0.08 -2.28 4.76 30.49 0.15 -2.13 16 16 C -0.09 -2.35 0.55 -52.80 -0.03 -2.38 16 17 C -0.11 -1.62 6.21 31.52 0.20 -1.42 16 18 C 0.10 1.40 7.36 86.86 0.64 2.04 16 19 N -0.62 -14.77 2.94 -818.08 -2.40 -17.18 16 20 C 0.16 3.46 6.22 86.38 0.54 4.00 16 21 C -0.19 -4.21 6.01 -10.80 -0.06 -4.28 16 22 C -0.15 -2.18 10.18 30.60 0.31 -1.86 16 23 C -0.18 -3.40 10.25 30.59 0.31 -3.08 16 24 C 0.51 17.14 6.32 87.71 0.55 17.69 16 25 O -0.57 -26.47 13.85 -3.04 -0.04 -26.51 16 26 C -0.08 -2.52 4.78 30.51 0.15 -2.37 16 27 C 0.05 2.10 4.57 86.36 0.40 2.49 16 28 H 0.06 2.35 7.75 -2.39 -0.02 2.33 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 1.46 6.04 -2.39 -0.01 1.45 16 32 H 0.06 3.41 5.95 -2.38 -0.01 3.40 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.00 0.15 5.53 -2.39 -0.01 0.14 16 35 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 1.16 7.89 -2.38 -0.02 1.14 16 39 H 0.12 1.12 7.87 -2.39 -0.02 1.10 16 40 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.05 1.49 7.94 -2.39 -0.02 1.48 16 43 H 0.11 1.55 7.88 -2.38 -0.02 1.53 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.12 1.16 8.03 -2.39 -0.02 1.14 16 46 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 48 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 49 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 50 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 51 H 0.02 1.29 4.30 -2.38 -0.01 1.28 16 52 H 0.05 2.41 5.91 -2.39 -0.01 2.40 16 Total: -1.00 -77.93 387.31 2.27 -75.66 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.88 Total: 15.19 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 5.14 Total: -16.60 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -5.73 Total: -98.64 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.04 Total: -26.51 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal Total: -77.93 2.27 -75.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176798.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.230 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds