Wall clock time and date at job start Tue Mar 31 2020 12:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50697 * 120.00397 * 2 1 4 4 N 1.46497 * 109.47427 * 125.00237 * 3 2 1 5 5 C 1.46789 * 124.32239 * 269.97968 * 4 3 2 6 6 C 1.54428 * 105.43649 * 196.91588 * 5 4 3 7 7 C 1.54898 * 101.85664 * 334.38265 * 6 5 4 8 8 C 1.46063 * 112.09523 * 146.97764 * 7 6 5 9 9 C 1.54187 * 112.37032 * 182.06117 * 8 7 6 10 10 C 1.50472 * 108.45548 * 281.28171 * 9 8 7 11 11 N 1.47980 * 112.72456 * 93.81964 * 10 9 8 12 12 C 1.46903 * 110.99639 * 191.40188 * 11 10 9 13 13 C 1.53005 * 109.46774 * 293.94635 * 12 11 10 14 14 C 1.52998 * 109.47062 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47390 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99974 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00531 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99380 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00155 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47118 * 89.99700 * 19 17 15 21 21 H 1.48507 * 109.46493 * 209.99597 * 19 17 15 22 22 H 1.48498 * 109.46845 * 329.99240 * 19 17 15 23 23 C 1.48049 * 114.64293 * 318.15120 * 11 10 9 24 24 C 1.50322 * 112.96752 * 317.98526 * 23 11 10 25 25 C 1.34319 * 124.33814 * 89.97467 * 4 3 2 26 26 O 1.21279 * 124.90108 * 359.92984 * 25 4 3 27 27 H 1.08003 * 120.00201 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00313 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00201 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46931 * 5.00597 * 3 2 1 31 31 H 1.09004 * 109.47543 * 245.00545 * 3 2 1 32 32 H 1.09005 * 110.24017 * 77.94319 * 5 4 3 33 33 H 1.08993 * 110.28634 * 315.92288 * 5 4 3 34 34 H 1.09002 * 110.96047 * 216.23088 * 6 5 4 35 35 H 1.08999 * 110.95300 * 92.53208 * 6 5 4 36 36 H 1.08998 * 108.90546 * 302.81088 * 8 7 6 37 37 H 1.09006 * 108.89907 * 61.32175 * 8 7 6 38 38 H 1.09001 * 109.63864 * 40.97581 * 9 8 7 39 39 H 1.09004 * 109.63406 * 161.58788 * 9 8 7 40 40 H 1.09007 * 108.82759 * 214.65357 * 10 9 8 41 41 H 1.09001 * 108.83515 * 332.97677 * 10 9 8 42 42 H 1.08996 * 109.47780 * 53.94959 * 12 11 10 43 43 H 1.09003 * 109.46836 * 173.95435 * 12 11 10 44 44 H 1.08998 * 109.47745 * 300.00679 * 13 12 11 45 45 H 1.09003 * 109.46785 * 60.00769 * 13 12 11 46 46 H 1.09002 * 109.47007 * 299.99955 * 14 13 12 47 47 H 1.08996 * 109.47405 * 59.99995 * 14 13 12 48 48 H 0.97002 * 119.99492 * 180.02562 * 18 17 15 49 49 H 1.09002 * 108.77798 * 78.88258 * 23 11 10 50 50 H 1.08990 * 108.78538 * 197.19704 * 23 11 10 51 51 H 1.09001 * 109.60762 * 333.85319 * 24 23 11 52 52 H 1.08999 * 109.60417 * 213.35994 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.6596 1.8439 2.4658 6 6 4.0150 2.0746 3.1689 7 6 4.9329 1.0708 2.4278 8 6 6.3035 1.5621 2.3115 9 6 7.2108 0.5905 1.5303 10 6 7.6093 -0.5322 2.4495 11 7 6.7138 -1.7052 2.3408 12 6 6.9636 -2.6608 3.4283 13 6 8.3642 -3.2565 3.2719 14 6 8.6242 -4.2521 4.4042 15 6 10.0039 -4.8385 4.2506 16 1 10.6324 -4.5319 3.4275 17 6 10.4636 -5.7670 5.1603 18 7 9.6981 -6.1406 6.1623 19 14 12.1737 -6.4943 4.9695 20 1 13.1533 -5.6555 5.7056 21 1 12.1894 -7.8731 5.5209 22 1 12.5374 -6.5325 3.5302 23 6 5.2737 -1.3756 2.2446 24 6 4.8598 -0.2759 3.1822 25 6 4.2615 0.8909 1.0804 26 8 4.7925 0.4170 0.0984 27 1 -0.5400 0.9353 0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4026 -0.9314 32 1 2.0701 1.1095 3.0148 33 1 2.1123 2.7829 2.3841 34 1 3.9499 1.8334 4.2299 35 1 4.3599 3.0984 3.0242 36 1 6.2916 2.5238 1.7985 37 1 6.7144 1.7023 3.3113 38 1 6.6670 0.1887 0.6754 39 1 8.1015 1.1169 1.1872 40 1 8.6259 -0.8419 2.2064 41 1 7.5906 -0.1692 3.4771 42 1 6.8921 -2.1471 4.3869 43 1 6.2226 -3.4592 3.3877 44 1 8.4358 -3.7702 2.3133 45 1 9.1052 -2.4581 3.3125 46 1 8.5527 -3.7387 5.3630 47 1 7.8832 -5.0505 4.3633 48 1 10.0217 -6.7936 6.8025 49 1 5.0516 -1.0678 1.2228 50 1 4.6930 -2.2686 2.4756 51 1 5.5337 -0.2524 4.0386 52 1 3.8388 -0.4499 3.5219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:23 Heat of formation + Delta-G solvation = -10.377837 kcal Electronic energy + Delta-G solvation = -28252.125781 eV Core-core repulsion = 24637.851749 eV Total energy + Delta-G solvation = -3614.274032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78470 -38.31948 -36.83756 -35.85328 -34.24127 -33.17147 -32.17872 -31.32745 -29.67792 -27.52026 -26.79909 -25.40348 -25.24750 -22.99312 -22.21371 -21.74650 -20.37310 -20.16006 -19.32571 -18.83031 -17.05755 -16.62236 -16.27496 -15.99670 -15.70423 -15.39556 -14.67517 -14.54381 -14.37322 -14.13738 -14.02275 -13.87512 -13.37574 -13.24303 -12.84872 -12.78763 -12.54614 -12.34823 -12.26474 -12.24123 -12.07468 -11.80428 -11.66229 -11.43457 -11.16951 -11.05466 -10.79069 -10.76149 -10.63008 -10.41672 -10.29920 -10.21174 -9.93573 -9.49086 -9.42227 -9.21270 -9.03784 -8.93598 -8.27648 -7.70511 -5.93321 -3.94661 1.72993 2.40092 2.82054 3.36606 3.42365 3.46976 3.87859 4.09140 4.26639 4.33380 4.48526 4.52971 4.57159 4.67577 4.77118 4.97565 5.03603 5.07404 5.11606 5.23503 5.25466 5.32973 5.39852 5.42474 5.50267 5.51581 5.56666 5.68917 5.69357 5.81345 5.90040 5.95717 6.01408 6.06974 6.08352 6.15915 6.20181 6.27131 6.37980 6.44635 6.47998 6.57777 6.84401 6.87377 6.94465 7.25849 7.61680 7.62874 7.77271 7.93382 7.98786 8.08314 8.52538 9.12783 9.68873 11.18257 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.002468 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.210126 B =11342.926137 C =11723.870375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.152 3.848 4 N -0.618 5.618 5 C 0.105 3.895 6 C -0.129 4.129 7 C -0.081 4.081 8 C -0.099 4.099 9 C -0.139 4.139 10 C 0.066 3.934 11 N -0.543 5.543 12 C 0.060 3.940 13 C -0.104 4.104 14 C 0.022 3.978 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.031 3.969 24 C -0.130 4.130 25 C 0.529 3.471 26 O -0.508 6.508 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.027 0.973 42 H 0.024 0.976 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.012 0.988 47 H 0.014 0.986 48 H 0.259 0.741 49 H 0.098 0.902 50 H 0.063 0.937 51 H 0.078 0.922 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.706 21.493 -8.325 30.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.190 4.190 3 C 0.031 3.969 4 N -0.352 5.352 5 C -0.018 4.018 6 C -0.167 4.167 7 C -0.084 4.084 8 C -0.136 4.136 9 C -0.176 4.176 10 C -0.061 4.061 11 N -0.267 5.267 12 C -0.067 4.067 13 C -0.142 4.142 14 C -0.016 4.016 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.096 4.096 24 C -0.170 4.170 25 C 0.317 3.683 26 O -0.384 6.384 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.030 0.970 47 H 0.033 0.967 48 H 0.069 0.931 49 H 0.115 0.885 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.362 20.928 -9.182 29.953 hybrid contribution 0.526 -0.133 0.993 1.131 sum -18.836 20.794 -8.189 29.228 Atomic orbital electron populations 1.23870 0.95650 1.02081 1.00183 1.23373 0.96207 0.99276 1.00105 1.20474 0.91661 0.95362 0.89420 1.48263 1.12357 1.62901 1.11633 1.22067 0.97640 0.99405 0.82703 1.22891 0.93560 0.99746 1.00520 1.20474 0.96665 0.97641 0.93644 1.20396 0.92714 0.99100 1.01420 1.21674 0.99586 0.95651 1.00679 1.21746 0.97191 0.89904 0.97292 1.61910 1.03473 1.14541 1.46808 1.22302 0.99808 0.94041 0.90585 1.21636 0.92808 0.98825 1.00957 1.19071 0.96497 0.93349 0.92647 1.21278 1.00409 1.23100 1.10596 0.92693 1.25032 0.97435 0.96725 0.95399 1.69973 1.36513 1.32735 1.14550 0.86606 0.84785 0.78369 0.78328 1.20739 1.21282 1.19847 1.22342 0.89080 0.96811 1.01391 1.21996 1.02260 0.93461 0.99258 1.20848 0.81564 0.76148 0.89755 1.90631 1.67451 1.43699 1.36607 0.88503 0.88148 0.86962 0.90022 0.89065 0.91056 0.90425 0.88911 0.89964 0.92147 0.91112 0.87455 0.91439 0.90753 0.95447 0.95809 0.91650 0.92696 0.93577 0.96968 0.96721 0.93128 0.88475 0.91868 0.90372 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 14.32 29.02 0.42 -0.69 16 2 C -0.17 -1.33 9.85 -36.02 -0.35 -1.68 16 3 C 0.15 1.13 6.37 -5.20 -0.03 1.10 16 4 N -0.62 -5.31 2.91 -173.69 -0.51 -5.82 16 5 C 0.10 0.63 7.07 -3.14 -0.02 0.60 16 6 C -0.13 -0.83 6.02 -24.98 -0.15 -0.98 16 7 C -0.08 -0.79 0.56 -156.70 -0.09 -0.88 16 8 C -0.10 -1.03 4.14 -29.40 -0.12 -1.15 16 9 C -0.14 -1.81 5.55 -27.37 -0.15 -1.96 16 10 C 0.07 0.99 4.47 -4.49 -0.02 0.97 16 11 N -0.54 -9.02 4.68 -235.93 -1.10 -10.12 16 12 C 0.06 1.12 4.88 -3.82 -0.02 1.10 16 13 C -0.10 -2.30 5.08 -26.73 -0.14 -2.44 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 16 H 0.05 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 19 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.03 0.45 4.99 -4.53 -0.02 0.42 16 24 C -0.13 -1.46 4.39 -27.26 -0.12 -1.58 16 25 C 0.53 6.03 5.68 -10.74 -0.06 5.97 16 26 O -0.51 -7.56 12.92 5.56 0.07 -7.48 16 27 H 0.10 0.45 7.84 -52.48 -0.41 0.04 16 28 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16 29 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.08 0.41 7.79 -51.93 -0.40 0.00 16 31 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.50 7.85 -51.93 -0.41 0.10 16 35 H 0.08 0.45 7.97 -51.93 -0.41 0.04 16 36 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.07 0.69 7.51 -51.93 -0.39 0.30 16 38 H 0.11 1.65 4.60 -51.93 -0.24 1.41 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.21 6.99 -51.93 -0.36 0.85 16 41 H 0.03 0.41 6.39 -51.93 -0.33 0.07 16 42 H 0.02 0.44 7.82 -51.93 -0.41 0.03 16 43 H 0.07 1.23 7.67 -51.93 -0.40 0.83 16 44 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.05 1.00 6.79 -51.93 -0.35 0.65 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.10 1.51 3.86 -51.93 -0.20 1.31 16 50 H 0.06 0.91 7.56 -51.93 -0.39 0.52 16 51 H 0.08 0.94 6.87 -51.93 -0.36 0.59 16 52 H 0.07 0.68 7.72 -51.93 -0.40 0.28 16 LS Contribution 389.89 15.07 5.88 5.88 Total: -1.00 -33.16 389.89 -10.61 -43.77 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -9.23 Total: -1.84 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.43 Total: -14.70 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.87 Total: -42.89 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.48 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.16 -10.61 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.393 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds