Wall clock time and date at job start Tue Mar 31 2020 12:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50697 * 120.00286 * 2 1 4 4 C 1.31007 * 120.00180 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99460 * 5.50441 * 4 2 1 6 6 N 1.46502 * 109.46578 * 125.46573 * 5 4 2 7 7 C 1.46877 * 124.36986 * 269.72217 * 6 5 4 8 8 C 1.54887 * 105.43105 * 163.05330 * 7 6 5 9 9 C 1.53607 * 101.43220 * 24.86820 * 8 7 6 10 10 C 1.53248 * 111.08526 * 97.10398 * 9 8 7 11 11 C 1.54635 * 104.67640 * 120.47171 * 10 9 8 12 12 N 1.48647 * 104.63420 * 23.68601 * 11 10 9 13 13 C 1.46897 * 111.00003 * 201.48529 * 12 11 10 14 14 C 1.52994 * 109.47515 * 290.12941 * 13 12 11 15 15 C 1.53007 * 109.46991 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47026 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99869 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00113 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00022 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99798 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46779 * 89.99859 * 20 18 16 22 22 H 1.48494 * 109.46791 * 209.99483 * 20 18 16 23 23 H 1.48497 * 109.47379 * 329.99995 * 20 18 16 24 24 C 1.48802 * 104.38250 * 321.14286 * 12 11 10 25 25 C 1.34750 * 124.37263 * 90.02606 * 6 5 4 26 26 O 1.21280 * 125.13750 * 0.98976 * 25 6 5 27 27 H 1.09001 * 109.46723 * 234.88095 * 1 2 3 28 28 H 1.09005 * 109.46680 * 354.87224 * 1 2 3 29 29 H 1.08989 * 109.47457 * 114.87610 * 1 2 3 30 30 H 1.09000 * 109.47282 * 240.00361 * 3 2 1 31 31 H 1.08999 * 109.47104 * 0.02562 * 3 2 1 32 32 H 1.09009 * 109.47213 * 120.00355 * 3 2 1 33 33 H 1.07999 * 120.00221 * 185.50878 * 4 2 1 34 34 H 1.09000 * 109.46934 * 5.46670 * 5 4 2 35 35 H 1.08997 * 109.47178 * 245.46177 * 5 4 2 36 36 H 1.09008 * 110.24111 * 282.19347 * 7 6 5 37 37 H 1.09001 * 110.24255 * 44.16628 * 7 6 5 38 38 H 1.09000 * 111.23995 * 266.75419 * 8 7 6 39 39 H 1.08999 * 110.90281 * 142.83033 * 8 7 6 40 40 H 1.08999 * 110.39839 * 239.27578 * 10 9 8 41 41 H 1.08999 * 110.39603 * 1.66953 * 10 9 8 42 42 H 1.08999 * 110.40713 * 142.47878 * 11 10 9 43 43 H 1.09006 * 110.40305 * 264.89757 * 11 10 9 44 44 H 1.09010 * 109.47110 * 50.13356 * 13 12 11 45 45 H 1.09001 * 109.46766 * 170.12316 * 13 12 11 46 46 H 1.09001 * 109.47203 * 299.99686 * 14 13 12 47 47 H 1.08995 * 109.46976 * 60.00034 * 14 13 12 48 48 H 1.08996 * 109.47277 * 299.99674 * 15 14 13 49 49 H 1.08995 * 109.47246 * 60.00182 * 15 14 13 50 50 H 0.96999 * 120.00045 * 179.97438 * 19 18 16 51 51 H 1.09004 * 110.45292 * 279.82249 * 24 12 11 52 52 H 1.08998 * 110.45854 * 157.26160 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1621 -1.1345 -0.0005 5 6 1.4137 -2.4366 -0.1263 6 7 1.9571 -3.2056 -1.2486 7 6 1.4662 -3.1162 -2.6300 8 6 2.5817 -3.7399 -3.5050 9 6 3.2748 -4.6695 -2.4976 10 6 2.7602 -6.1070 -2.6293 11 6 4.0156 -6.9429 -2.9704 12 7 5.1536 -6.1412 -2.4490 13 6 6.4090 -6.5145 -3.1143 14 6 6.8257 -7.9171 -2.6673 15 6 8.1336 -8.3055 -3.3598 16 6 8.5445 -9.6868 -2.9190 17 1 7.9335 -10.2332 -2.2157 18 6 9.6996 -10.2535 -3.4145 19 7 10.0584 -11.4587 -3.0294 20 14 10.7558 -9.3087 -4.6316 21 1 11.7624 -8.5043 -3.8933 22 1 11.4496 -10.2648 -5.5313 23 1 9.8952 -8.4059 -5.4374 24 6 4.7852 -4.7327 -2.7567 25 6 2.9680 -4.0906 -1.1457 26 8 3.5436 -4.3763 -0.1171 27 1 -0.3633 -0.5912 0.8406 28 1 -0.3633 1.0236 0.0919 29 1 -0.3634 -0.4322 -0.9322 30 1 2.8872 1.3628 -0.8900 31 1 1.5523 2.1336 0.0005 32 1 2.8873 1.3627 0.8900 33 1 3.2383 -1.1367 0.0893 34 1 0.3575 -2.2329 -0.3029 35 1 1.5243 -3.0096 0.7942 36 1 0.5392 -3.6795 -2.7380 37 1 1.3092 -2.0739 -2.9077 38 1 3.2694 -2.9774 -3.8707 39 1 2.1554 -4.3079 -4.3319 40 1 2.3246 -6.4423 -1.6881 41 1 2.0277 -6.1760 -3.4336 42 1 3.9738 -7.9118 -2.4728 43 1 4.1045 -7.0722 -4.0491 44 1 6.2643 -6.5054 -4.1947 45 1 7.1883 -5.8011 -2.8462 46 1 6.9705 -7.9261 -1.5870 47 1 6.0464 -8.6303 -2.9355 48 1 7.9894 -8.2964 -4.4402 49 1 8.9127 -7.5921 -3.0912 50 1 10.8709 -11.8576 -3.3783 51 1 5.0029 -4.5012 -3.7994 52 1 5.3143 -4.0472 -2.0948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:12 Heat of formation + Delta-G solvation = -22.224707 kcal Electronic energy + Delta-G solvation = -27189.852931 eV Core-core repulsion = 23575.065181 eV Total energy + Delta-G solvation = -3614.787751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28292 -38.36067 -37.17328 -36.30519 -34.46759 -32.91011 -31.57257 -30.02575 -29.07293 -28.41174 -28.05067 -26.61870 -24.87620 -23.61242 -22.89882 -21.33165 -20.86769 -19.80298 -19.11219 -18.28661 -16.87706 -16.69964 -16.55554 -15.68024 -15.45864 -15.22197 -14.67958 -14.61576 -14.46247 -14.28183 -14.08643 -13.97091 -13.70446 -13.01936 -12.93913 -12.91553 -12.69997 -12.53842 -12.46999 -12.39249 -12.31403 -12.02063 -11.95000 -11.76430 -11.54029 -11.41101 -11.26930 -11.09771 -10.84894 -10.83290 -10.60541 -9.85836 -9.70476 -9.61866 -9.50716 -9.15377 -9.10632 -8.94517 -8.47830 -8.20213 -5.98064 -3.95307 1.61746 2.50254 2.89020 3.34698 3.41325 3.45122 3.91206 4.08550 4.26972 4.33946 4.39297 4.48833 4.50350 4.66830 4.73907 4.85207 4.85906 4.96551 5.07338 5.13817 5.18532 5.21570 5.29787 5.34866 5.35189 5.35712 5.41677 5.43998 5.48410 5.52728 5.58228 5.62539 5.63478 5.69033 5.77187 5.89328 6.01626 6.09851 6.18342 6.23503 6.28649 6.52042 6.59413 6.64098 6.89537 6.94934 7.10694 7.29743 7.42659 7.54383 7.86814 8.11155 8.62064 9.08109 9.64630 11.15584 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.002149 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.286222 B =13025.975721 C =13311.091863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 C -0.118 4.118 4 C -0.180 4.180 5 C 0.154 3.846 6 N -0.622 5.622 7 C 0.106 3.894 8 C -0.124 4.124 9 C -0.099 4.099 10 C -0.100 4.100 11 C 0.035 3.965 12 N -0.502 5.502 13 C 0.044 3.956 14 C -0.095 4.095 15 C -0.013 4.013 16 C -0.516 4.516 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.267 1.267 24 C 0.057 3.943 25 C 0.534 3.466 26 O -0.504 6.504 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.012 0.988 49 H 0.011 0.989 50 H 0.262 0.738 51 H 0.051 0.949 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.369 25.753 -0.312 35.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.124 4.124 3 C -0.175 4.175 4 C -0.200 4.200 5 C 0.033 3.967 6 N -0.358 5.358 7 C -0.017 4.017 8 C -0.162 4.162 9 C -0.103 4.103 10 C -0.138 4.138 11 C -0.093 4.093 12 N -0.226 5.226 13 C -0.084 4.084 14 C -0.133 4.133 15 C -0.051 4.051 16 C -0.554 4.554 17 H 0.090 0.910 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.071 4.071 25 C 0.320 3.680 26 O -0.377 6.377 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.031 0.969 49 H 0.029 0.971 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.850 25.398 0.866 34.851 hybrid contribution 0.644 0.602 -1.526 1.762 sum -23.206 25.999 -0.661 34.856 Atomic orbital electron populations 1.20916 0.92298 1.02577 1.01985 1.21654 0.95762 0.95028 0.99980 1.20867 0.99903 0.94483 1.02239 1.22997 1.00403 0.93780 1.02793 1.20365 0.96608 0.90138 0.89587 1.48402 1.36281 1.42169 1.08910 1.22115 0.97215 1.01544 0.80802 1.22745 0.97300 0.98953 0.97159 1.21425 0.97787 0.97055 0.94017 1.22194 0.97919 0.91272 1.02444 1.23183 0.89631 0.98238 0.98292 1.65513 1.02336 1.01183 1.53555 1.22487 0.90794 0.99681 0.95430 1.21418 0.98560 0.92261 1.01103 1.19559 0.92880 0.97115 0.95570 1.21161 1.08202 0.99305 1.26773 0.91012 1.25049 0.97476 0.94806 0.96347 1.69923 1.24731 1.15102 1.44685 0.86762 0.80738 0.79942 0.81721 1.20321 1.21482 1.19128 1.22861 0.91702 0.93047 0.99534 1.20355 0.78913 0.78330 0.90370 1.90760 1.52177 1.61404 1.33355 0.91418 0.91868 0.91489 0.91539 0.91953 0.91545 0.87119 0.89758 0.89430 0.91122 0.90595 0.89741 0.88900 0.90716 0.90402 0.89432 0.93525 0.95128 0.91197 0.91906 0.92931 0.96927 0.97100 0.92840 0.93065 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 8.55 36.01 0.31 -0.27 16 2 C -0.12 -0.82 6.05 -101.07 -0.61 -1.43 16 3 C -0.12 -0.68 10.05 36.00 0.36 -0.32 16 4 C -0.18 -1.51 9.48 -36.03 -0.34 -1.85 16 5 C 0.15 1.28 6.14 -5.19 -0.03 1.25 16 6 N -0.62 -5.88 2.93 -173.78 -0.51 -6.39 16 7 C 0.11 0.66 7.37 -2.84 -0.02 0.64 16 8 C -0.12 -0.85 6.12 -25.42 -0.16 -1.00 16 9 C -0.10 -1.07 0.83 -155.25 -0.13 -1.20 16 10 C -0.10 -1.08 6.32 -25.74 -0.16 -1.24 16 11 C 0.03 0.47 5.76 -2.00 -0.01 0.46 16 12 N -0.50 -7.99 5.37 -230.16 -1.24 -9.23 16 13 C 0.04 0.76 4.81 -3.83 -0.02 0.74 16 14 C -0.10 -2.02 5.21 -26.73 -0.14 -2.15 16 15 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 16 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 17 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.66 13.96 55.43 0.77 -27.89 16 20 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 C 0.06 0.74 5.46 -2.58 -0.01 0.73 16 25 C 0.53 6.92 6.49 -11.22 -0.07 6.85 16 26 O -0.50 -8.86 17.46 5.56 0.10 -8.77 16 27 H 0.07 0.30 7.84 -51.93 -0.41 -0.11 16 28 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 29 H 0.07 0.27 7.67 -51.94 -0.40 -0.12 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 32 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.11 1.12 8.05 -52.49 -0.42 0.70 16 34 H 0.08 0.50 5.88 -51.93 -0.31 0.19 16 35 H 0.09 0.86 7.93 -51.93 -0.41 0.44 16 36 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 39 H 0.09 0.48 7.43 -51.93 -0.39 0.10 16 40 H 0.07 0.89 7.76 -51.93 -0.40 0.49 16 41 H 0.08 0.62 7.32 -51.93 -0.38 0.24 16 42 H 0.09 1.27 7.79 -51.93 -0.40 0.87 16 43 H 0.05 0.60 7.81 -51.93 -0.41 0.19 16 44 H 0.03 0.50 7.88 -51.92 -0.41 0.09 16 45 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 46 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.05 1.10 7.27 -51.93 -0.38 0.72 16 48 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 49 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 50 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 51 H 0.05 0.58 7.70 -51.93 -0.40 0.18 16 52 H 0.08 1.16 7.84 -51.93 -0.41 0.76 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -35.05 405.12 -10.64 -45.69 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -9.62 Total: -4.13 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -1.58 Total: -13.04 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.97 Total: -43.50 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.10 Total: -8.77 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.05 -10.64 -45.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.464 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds