Wall clock time and date at job start Tue Mar 31 2020 12:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50697 * 120.00286 * 2 1 4 4 C 1.31007 * 120.00180 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99460 * 5.50441 * 4 2 1 6 6 N 1.46502 * 109.46578 * 125.46573 * 5 4 2 7 7 C 1.46877 * 124.36986 * 269.72217 * 6 5 4 8 8 C 1.54887 * 105.43105 * 163.05330 * 7 6 5 9 9 C 1.53607 * 101.43220 * 24.86820 * 8 7 6 10 10 C 1.53248 * 111.08526 * 97.10398 * 9 8 7 11 11 C 1.54635 * 104.67640 * 120.47171 * 10 9 8 12 12 N 1.48647 * 104.63420 * 23.68601 * 11 10 9 13 13 C 1.46897 * 111.00003 * 201.48529 * 12 11 10 14 14 C 1.52994 * 109.47515 * 290.12941 * 13 12 11 15 15 C 1.53007 * 109.46991 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47026 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99869 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00113 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00022 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99798 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46779 * 89.99859 * 20 18 16 22 22 H 1.48494 * 109.46791 * 209.99483 * 20 18 16 23 23 H 1.48497 * 109.47379 * 329.99995 * 20 18 16 24 24 C 1.48802 * 104.38250 * 321.14286 * 12 11 10 25 25 C 1.34750 * 124.37263 * 90.02606 * 6 5 4 26 26 O 1.21280 * 125.13750 * 0.98976 * 25 6 5 27 27 H 1.09001 * 109.46723 * 234.88095 * 1 2 3 28 28 H 1.09005 * 109.46680 * 354.87224 * 1 2 3 29 29 H 1.08989 * 109.47457 * 114.87610 * 1 2 3 30 30 H 1.09000 * 109.47282 * 240.00361 * 3 2 1 31 31 H 1.08999 * 109.47104 * 0.02562 * 3 2 1 32 32 H 1.09009 * 109.47213 * 120.00355 * 3 2 1 33 33 H 1.07999 * 120.00221 * 185.50878 * 4 2 1 34 34 H 1.09000 * 109.46934 * 5.46670 * 5 4 2 35 35 H 1.08997 * 109.47178 * 245.46177 * 5 4 2 36 36 H 1.09008 * 110.24111 * 282.19347 * 7 6 5 37 37 H 1.09001 * 110.24255 * 44.16628 * 7 6 5 38 38 H 1.09000 * 111.23995 * 266.75419 * 8 7 6 39 39 H 1.08999 * 110.90281 * 142.83033 * 8 7 6 40 40 H 1.08999 * 110.39839 * 239.27578 * 10 9 8 41 41 H 1.08999 * 110.39603 * 1.66953 * 10 9 8 42 42 H 1.08999 * 110.40713 * 142.47878 * 11 10 9 43 43 H 1.09006 * 110.40305 * 264.89757 * 11 10 9 44 44 H 1.09010 * 109.47110 * 50.13356 * 13 12 11 45 45 H 1.09001 * 109.46766 * 170.12316 * 13 12 11 46 46 H 1.09001 * 109.47203 * 299.99686 * 14 13 12 47 47 H 1.08995 * 109.46976 * 60.00034 * 14 13 12 48 48 H 1.08996 * 109.47277 * 299.99674 * 15 14 13 49 49 H 1.08995 * 109.47246 * 60.00182 * 15 14 13 50 50 H 0.96999 * 120.00045 * 179.97438 * 19 18 16 51 51 H 1.09004 * 110.45292 * 279.82249 * 24 12 11 52 52 H 1.08998 * 110.45854 * 157.26160 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1621 -1.1345 -0.0005 5 6 1.4137 -2.4366 -0.1263 6 7 1.9571 -3.2056 -1.2486 7 6 1.4662 -3.1162 -2.6300 8 6 2.5817 -3.7399 -3.5050 9 6 3.2748 -4.6695 -2.4976 10 6 2.7602 -6.1070 -2.6293 11 6 4.0156 -6.9429 -2.9704 12 7 5.1536 -6.1412 -2.4490 13 6 6.4090 -6.5145 -3.1143 14 6 6.8257 -7.9171 -2.6673 15 6 8.1336 -8.3055 -3.3598 16 6 8.5445 -9.6868 -2.9190 17 1 7.9335 -10.2332 -2.2157 18 6 9.6996 -10.2535 -3.4145 19 7 10.0584 -11.4587 -3.0294 20 14 10.7558 -9.3087 -4.6316 21 1 11.7624 -8.5043 -3.8933 22 1 11.4496 -10.2648 -5.5313 23 1 9.8952 -8.4059 -5.4374 24 6 4.7852 -4.7327 -2.7567 25 6 2.9680 -4.0906 -1.1457 26 8 3.5436 -4.3763 -0.1171 27 1 -0.3633 -0.5912 0.8406 28 1 -0.3633 1.0236 0.0919 29 1 -0.3634 -0.4322 -0.9322 30 1 2.8872 1.3628 -0.8900 31 1 1.5523 2.1336 0.0005 32 1 2.8873 1.3627 0.8900 33 1 3.2383 -1.1367 0.0893 34 1 0.3575 -2.2329 -0.3029 35 1 1.5243 -3.0096 0.7942 36 1 0.5392 -3.6795 -2.7380 37 1 1.3092 -2.0739 -2.9077 38 1 3.2694 -2.9774 -3.8707 39 1 2.1554 -4.3079 -4.3319 40 1 2.3246 -6.4423 -1.6881 41 1 2.0277 -6.1760 -3.4336 42 1 3.9738 -7.9118 -2.4728 43 1 4.1045 -7.0722 -4.0491 44 1 6.2643 -6.5054 -4.1947 45 1 7.1883 -5.8011 -2.8462 46 1 6.9705 -7.9261 -1.5870 47 1 6.0464 -8.6303 -2.9355 48 1 7.9894 -8.2964 -4.4402 49 1 8.9127 -7.5921 -3.0912 50 1 10.8709 -11.8576 -3.3783 51 1 5.0029 -4.5012 -3.7994 52 1 5.3143 -4.0472 -2.0948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:11 Heat of formation + Delta-G solvation = -45.144093 kcal Electronic energy + Delta-G solvation = -27190.846791 eV Core-core repulsion = 23575.065181 eV Total energy + Delta-G solvation = -3615.781610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.13597 -39.37291 -37.94327 -37.19379 -36.03747 -34.50051 -33.05324 -31.18922 -29.89940 -29.15570 -28.53243 -28.18265 -25.67546 -24.74265 -24.01300 -22.48850 -22.14199 -21.25226 -19.99394 -18.89473 -18.87624 -17.62383 -17.51829 -16.64597 -16.31086 -16.28413 -16.01511 -15.89239 -15.52733 -15.08501 -15.01983 -14.84038 -14.72619 -14.49122 -14.24067 -13.96958 -13.51603 -13.40627 -13.35462 -13.19336 -13.10459 -13.04532 -12.80664 -12.75069 -12.65998 -12.53294 -12.46058 -12.28954 -12.03594 -11.85880 -11.76695 -11.63591 -11.43669 -11.37849 -11.25495 -10.77060 -10.64221 -9.75780 -9.66221 -9.35585 -8.29777 -6.34529 1.02425 1.35397 1.37758 1.50104 1.55960 2.19860 2.36273 2.97757 3.04965 3.27577 3.40827 3.58020 3.84135 3.89847 3.98657 4.07214 4.13905 4.19206 4.25079 4.25687 4.38682 4.44936 4.51710 4.55786 4.63138 4.67151 4.68844 4.70835 4.74417 4.80203 4.83053 4.86938 4.90638 4.91774 4.95715 5.00883 5.02052 5.08540 5.10428 5.12927 5.13980 5.19307 5.49424 5.56717 5.58447 5.65123 5.69331 5.92528 5.95138 6.08216 6.15094 6.29789 6.73297 7.21114 7.29666 8.87426 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.002149 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.286222 B =13025.975721 C =13311.091863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C -0.123 4.123 4 C -0.206 4.206 5 C 0.155 3.845 6 N -0.616 5.616 7 C 0.102 3.898 8 C -0.113 4.113 9 C -0.097 4.097 10 C -0.091 4.091 11 C 0.031 3.969 12 N -0.534 5.534 13 C 0.057 3.943 14 C -0.086 4.086 15 C -0.008 4.008 16 C -0.535 4.535 17 H 0.025 0.975 18 C -0.001 4.001 19 N -0.953 5.953 20 Si 0.958 3.042 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.242 1.242 24 C 0.059 3.941 25 C 0.520 3.480 26 O -0.569 6.569 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.055 0.945 41 H 0.119 0.881 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.036 0.964 47 H 0.047 0.953 48 H 0.025 0.975 49 H 0.017 0.983 50 H 0.267 0.733 51 H 0.076 0.924 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.577 29.035 -3.660 39.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.105 4.105 3 C -0.179 4.179 4 C -0.225 4.225 5 C 0.034 3.966 6 N -0.349 5.349 7 C -0.019 4.019 8 C -0.151 4.151 9 C -0.101 4.101 10 C -0.129 4.129 11 C -0.097 4.097 12 N -0.258 5.258 13 C -0.071 4.071 14 C -0.124 4.124 15 C -0.046 4.046 16 C -0.573 4.573 17 H 0.043 0.957 18 C -0.197 4.197 19 N -0.594 5.594 20 Si 0.780 3.220 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.165 1.165 24 C -0.069 4.069 25 C 0.308 3.692 26 O -0.448 6.448 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.141 0.859 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.044 0.956 49 H 0.036 0.964 50 H 0.075 0.925 51 H 0.094 0.906 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.120 28.722 -2.505 38.904 hybrid contribution 1.259 -0.428 -0.351 1.375 sum -24.862 28.294 -2.855 37.773 Atomic orbital electron populations 1.20996 0.90336 1.03719 1.02912 1.21940 0.97145 0.94541 0.96881 1.20942 1.00278 0.94693 1.02033 1.22755 0.99053 0.94585 1.06147 1.20431 0.98153 0.89518 0.88519 1.48565 1.34914 1.40654 1.10755 1.22444 0.97744 1.03411 0.78342 1.22817 0.97121 0.98356 0.96784 1.21430 0.96655 0.97906 0.94137 1.22185 0.97271 0.90532 1.02908 1.23221 0.90166 0.97518 0.98798 1.65378 1.02514 1.03359 1.54540 1.22209 0.91849 0.96667 0.96333 1.21230 0.96967 0.95081 0.99164 1.19485 0.94554 0.94206 0.96335 1.21503 1.08114 1.01503 1.26188 0.95655 1.26121 0.99048 0.95842 0.98691 1.70087 1.25649 1.17205 1.46438 0.85553 0.78752 0.78721 0.78964 1.19311 1.20714 1.16543 1.22860 0.93145 0.90616 1.00282 1.20863 0.79155 0.78707 0.90451 1.90715 1.54613 1.63800 1.35645 0.91012 0.90614 0.89967 0.91506 0.90197 0.92047 0.90053 0.86633 0.92016 0.88693 0.88378 0.88947 0.85915 0.92645 0.86328 0.91676 0.91932 0.93305 0.91291 0.94489 0.93441 0.95631 0.96445 0.92471 0.90571 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 8.55 71.24 0.61 -0.17 16 2 C -0.10 -1.22 6.05 -16.50 -0.10 -1.32 16 3 C -0.12 -1.24 10.05 71.24 0.72 -0.52 16 4 C -0.21 -3.44 9.48 25.64 0.24 -3.20 16 5 C 0.15 2.50 6.14 85.63 0.53 3.02 16 6 N -0.62 -10.88 2.93 -822.12 -2.41 -13.29 16 7 C 0.10 0.86 7.37 86.95 0.64 1.50 16 8 C -0.11 -1.07 6.12 31.44 0.19 -0.88 16 9 C -0.10 -1.95 0.83 -52.66 -0.04 -1.99 16 10 C -0.09 -1.80 6.32 31.23 0.20 -1.61 16 11 C 0.03 0.81 5.76 86.52 0.50 1.31 16 12 N -0.53 -17.02 5.37 -882.10 -4.74 -21.76 16 13 C 0.06 1.96 4.81 86.30 0.41 2.37 16 14 C -0.09 -3.74 5.21 30.59 0.16 -3.58 16 15 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 16 C -0.54 -32.74 9.66 25.60 0.25 -32.49 16 17 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 18 C 0.00 -0.05 5.47 84.65 0.46 0.42 16 19 N -0.95 -62.09 13.96 21.45 0.30 -61.79 16 20 Si 0.96 45.59 27.47 68.60 1.88 47.47 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 24 C 0.06 1.48 5.46 86.06 0.47 1.95 16 25 C 0.52 13.70 6.49 87.51 0.57 14.26 16 26 O -0.57 -21.60 17.46 -3.03 -0.05 -21.65 16 27 H 0.07 0.44 7.84 -2.39 -0.02 0.42 16 28 H 0.07 0.33 7.71 -2.38 -0.02 0.31 16 29 H 0.08 0.33 7.67 -2.39 -0.02 0.31 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.53 7.71 -2.39 -0.02 0.51 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.08 1.81 8.05 -2.91 -0.02 1.79 16 34 H 0.12 1.08 5.88 -2.39 -0.01 1.07 16 35 H 0.06 1.30 7.93 -2.39 -0.02 1.28 16 36 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.09 0.79 7.89 -2.39 -0.02 0.77 16 39 H 0.12 0.52 7.43 -2.39 -0.02 0.50 16 40 H 0.05 1.32 7.76 -2.39 -0.02 1.30 16 41 H 0.12 1.38 7.32 -2.39 -0.02 1.36 16 42 H 0.06 1.97 7.79 -2.39 -0.02 1.95 16 43 H 0.06 1.45 7.81 -2.38 -0.02 1.43 16 44 H 0.05 1.48 7.88 -2.38 -0.02 1.47 16 45 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 46 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.05 2.06 7.27 -2.39 -0.02 2.04 16 48 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 49 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 50 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 51 H 0.08 1.51 7.70 -2.38 -0.02 1.50 16 52 H 0.06 1.73 7.84 -2.39 -0.02 1.71 16 Total: -1.00 -82.72 405.12 1.71 -81.01 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.81 Total: 11.20 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 5.92 Total: -21.19 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -6.85 Total: -96.83 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -82.72 1.71 -81.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.863 kcal (2) G-P(sol) polarization free energy of solvation -82.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds