Wall clock time and date at job start Tue Mar 31 2020 12:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46642 * 2 1 4 4 C 1.53005 * 109.47208 * 119.99550 * 2 1 3 5 5 N 1.46899 * 109.46923 * 61.27220 * 4 2 1 6 6 C 1.46797 * 110.99922 * 175.83726 * 5 4 2 7 7 C 1.53263 * 109.45317 * 170.80445 * 6 5 4 8 8 C 1.53216 * 108.62408 * 55.56990 * 7 6 5 9 9 C 1.52737 * 117.84352 * 163.01880 * 8 7 6 10 10 C 1.52765 * 117.78340 * 94.01795 * 8 7 6 11 11 H 1.08998 * 117.50929 * 0.32404 * 10 8 7 12 12 C 1.50699 * 117.50472 * 215.29217 * 10 8 7 13 13 O 1.21281 * 120.00054 * 272.74856 * 12 10 8 14 14 N 1.34780 * 120.00007 * 92.75038 * 12 10 8 15 15 C 1.47577 * 134.49319 * 180.02562 * 14 12 10 16 16 C 1.53943 * 86.11987 * 155.35823 * 15 14 12 17 17 C 1.50700 * 113.74723 * 137.94980 * 16 15 14 18 18 H 1.08007 * 119.99529 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00257 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00314 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99898 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47298 * 179.97438 * 21 19 17 23 23 H 1.48505 * 109.47325 * 299.99275 * 21 19 17 24 24 H 1.48496 * 109.47321 * 59.99656 * 21 19 17 25 25 C 1.47577 * 134.49276 * 359.97438 * 14 12 10 26 26 C 1.53217 * 114.75732 * 308.61565 * 8 7 6 27 27 C 1.46817 * 110.99719 * 51.13065 * 5 4 2 28 28 H 1.09003 * 109.47024 * 60.00668 * 1 2 3 29 29 H 1.09002 * 109.46518 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47269 * 299.99954 * 1 2 3 31 31 H 1.08997 * 109.47269 * 240.00046 * 2 1 3 32 32 H 1.09012 * 109.47041 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47234 * 299.99714 * 3 2 1 34 34 H 1.08994 * 109.47759 * 60.00077 * 3 2 1 35 35 H 1.09000 * 109.46833 * 301.27488 * 4 2 1 36 36 H 1.08995 * 109.47098 * 181.27693 * 4 2 1 37 37 H 1.08996 * 109.47717 * 50.80892 * 6 5 4 38 38 H 1.08997 * 109.48342 * 290.80148 * 6 5 4 39 39 H 1.08999 * 109.60875 * 295.83530 * 7 6 5 40 40 H 1.08995 * 109.75649 * 175.39894 * 7 6 5 41 41 H 1.08998 * 117.50736 * 144.79075 * 9 8 7 42 42 H 1.09000 * 117.49856 * 359.74328 * 9 8 7 43 43 H 1.08996 * 113.77118 * 41.05382 * 15 14 12 44 44 H 1.09002 * 113.87242 * 269.67226 * 15 14 12 45 45 H 1.09004 * 113.74021 * 269.15854 * 16 15 14 46 46 H 0.96998 * 120.00661 * 180.02562 * 20 19 17 47 47 H 1.09000 * 113.77074 * 90.33846 * 25 14 12 48 48 H 1.09012 * 113.76620 * 318.94250 * 25 14 12 49 49 H 1.08994 * 109.61664 * 171.12612 * 26 8 7 50 50 H 1.09002 * 109.61065 * 291.64853 * 26 8 7 51 51 H 1.09003 * 109.47407 * 309.18548 * 27 5 4 52 52 H 1.08996 * 109.47485 * 69.19590 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5756 -2.1147 1.2341 6 6 2.1276 -2.8656 2.3684 7 6 1.4479 -4.2367 2.4521 8 6 1.6174 -4.9498 1.1066 9 6 1.3813 -6.4582 1.0640 10 6 2.8022 -5.9012 0.9492 11 1 3.4637 -6.0276 1.8062 12 6 3.4681 -5.9661 -0.4011 13 8 3.0488 -6.7261 -1.2481 14 7 4.5297 -5.1796 -0.6674 15 6 5.4025 -4.9827 -1.8411 16 6 5.6782 -3.5800 -1.2697 17 6 7.1234 -3.1620 -1.3583 18 1 7.8527 -3.8290 -1.7939 19 6 7.5145 -1.9282 -0.8833 20 7 6.6264 -1.1159 -0.3534 21 14 9.3057 -1.4099 -0.9938 22 1 9.4639 -0.0498 -0.4189 23 1 10.1466 -2.3696 -0.2341 24 1 9.7307 -1.3978 -2.4166 25 6 5.2856 -4.1686 0.0971 26 6 1.1967 -4.1251 -0.1142 27 6 1.8914 -2.7605 -0.0460 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6581 -0.2206 2.1391 36 1 3.1297 -0.7014 1.2608 37 1 1.9480 -2.3141 3.2912 38 1 3.2002 -2.9997 2.2281 39 1 0.3871 -4.1067 2.6660 40 1 1.9103 -4.8296 3.2412 41 1 0.9283 -6.8716 0.1629 42 1 1.1077 -6.9514 1.9967 43 1 4.8668 -4.9729 -2.7903 44 1 6.2780 -5.6319 -1.8536 45 1 4.9916 -2.8154 -1.6331 46 1 6.9015 -0.2477 -0.0196 47 1 6.1263 -4.5790 0.6566 48 1 4.6565 -3.5090 0.6950 49 1 1.4954 -4.6424 -1.0259 50 1 0.1156 -3.9860 -0.1068 51 1 1.5411 -2.1331 -0.8657 52 1 2.9696 -2.8970 -0.1280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278120246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:25 Heat of formation + Delta-G solvation = 10.170972 kcal Electronic energy + Delta-G solvation = -29473.656979 eV Core-core repulsion = 25860.274010 eV Total energy + Delta-G solvation = -3613.382969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.27795 -38.71725 -37.53673 -36.27984 -34.16247 -32.69266 -30.82882 -29.80465 -29.09627 -26.92760 -25.75713 -25.13332 -24.84377 -23.32383 -22.99825 -21.54492 -20.13811 -19.47897 -18.81428 -17.71752 -16.94553 -16.20982 -16.05629 -15.35238 -15.13382 -14.83592 -14.67354 -14.47727 -14.16247 -13.87590 -13.41527 -13.31885 -13.13365 -12.70245 -12.49794 -12.32616 -12.19411 -12.03953 -12.00944 -11.78527 -11.61414 -11.43559 -11.33665 -11.24576 -10.99359 -10.95673 -10.84533 -10.71580 -10.64763 -10.52609 -10.43274 -10.04938 -9.81642 -9.66724 -9.47145 -9.30925 -8.91939 -8.61377 -7.95819 -7.84350 -6.21498 -4.26504 3.05933 3.22054 3.27512 3.29941 3.54340 3.95336 4.15756 4.30174 4.70261 4.85605 4.96852 4.98274 5.00099 5.09481 5.16669 5.29541 5.35647 5.41163 5.58791 5.64448 5.69038 5.74115 5.78515 5.84020 5.86109 5.87868 5.95289 5.99965 6.03350 6.04713 6.08007 6.15493 6.20123 6.20442 6.24489 6.28963 6.31244 6.32783 6.36955 6.41279 6.45051 6.52739 6.56936 6.59929 6.72262 6.81785 7.35154 7.37394 7.51198 7.75518 8.13970 8.52971 8.75932 8.81219 9.40125 10.87587 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.008933 B = 0.005868 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.830325 B = 4770.530683 C = 7020.206214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.145 4.145 4 C 0.061 3.939 5 N -0.534 5.534 6 C 0.057 3.943 7 C -0.074 4.074 8 C -0.093 4.093 9 C -0.144 4.144 10 C -0.175 4.175 11 H 0.117 0.883 12 C 0.557 3.443 13 O -0.567 6.567 14 N -0.633 5.633 15 C 0.101 3.899 16 C 0.038 3.962 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.071 3.929 20 N -0.883 5.883 21 Si 0.893 3.107 22 H -0.287 1.287 23 H -0.276 1.276 24 H -0.275 1.275 25 C 0.106 3.894 26 C -0.079 4.079 27 C 0.047 3.953 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.263 0.737 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.866 0.361 6.108 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.067 4.067 5 N -0.259 5.259 6 C -0.071 4.071 7 C -0.112 4.112 8 C -0.094 4.094 9 C -0.182 4.182 10 C -0.195 4.195 11 H 0.135 0.865 12 C 0.346 3.654 13 O -0.448 6.448 14 N -0.366 5.366 15 C -0.021 4.021 16 C 0.019 3.981 17 C -0.558 4.558 18 H 0.079 0.921 19 C -0.133 4.133 20 N -0.520 5.520 21 Si 0.720 3.280 22 H -0.212 1.212 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.016 4.016 26 C -0.116 4.116 27 C -0.081 4.081 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.096 0.904 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.760 0.046 5.849 13.134 hybrid contribution 2.072 0.240 0.130 2.090 sum -9.689 0.286 5.979 11.388 Atomic orbital electron populations 1.21729 0.95013 1.02204 1.00409 1.21211 0.96141 0.95911 0.98409 1.21790 1.01676 0.95737 1.01112 1.22129 0.98443 0.88135 0.97994 1.61846 1.59560 1.01804 1.02641 1.22038 0.97160 0.93919 0.93985 1.21201 1.01427 0.94810 0.93757 1.21513 0.99445 0.91067 0.97387 1.22994 0.96235 0.95485 1.03463 1.22320 0.92003 1.07884 0.97338 0.86503 1.19225 0.80022 0.78556 0.87558 1.90619 1.65713 1.39848 1.48668 1.50344 1.28050 1.39192 1.18972 1.23492 0.90860 0.98837 0.88891 1.20448 0.97683 0.90264 0.89738 1.20926 0.92417 1.01499 1.40990 0.92051 1.24974 0.97554 0.96170 0.94598 1.69923 1.33591 1.09126 1.39364 0.86648 0.85046 0.77710 0.78581 1.21241 1.20151 1.20088 1.23700 0.92081 0.86532 0.99268 1.21222 1.00516 0.94537 0.95371 1.22271 0.99768 0.94350 0.91667 0.93823 0.91708 0.93337 0.90694 0.92133 0.92916 0.93147 0.91419 0.93772 0.91134 0.94245 0.90610 0.91586 0.87883 0.88424 0.92199 0.90951 0.91909 0.92707 0.91104 0.92056 0.91356 0.90949 0.90367 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.93 37.16 0.33 -1.25 16 2 C -0.10 -1.29 2.42 -90.62 -0.22 -1.51 16 3 C -0.15 -1.80 9.19 37.16 0.34 -1.46 16 4 C 0.06 0.84 4.55 -3.82 -0.02 0.83 16 5 N -0.53 -7.41 4.00 -234.45 -0.94 -8.35 16 6 C 0.06 0.76 5.49 -3.74 -0.02 0.74 16 7 C -0.07 -0.89 5.87 -26.48 -0.16 -1.04 16 8 C -0.09 -1.30 2.02 -154.54 -0.31 -1.61 16 9 C -0.14 -1.96 9.51 -26.84 -0.26 -2.22 16 10 C -0.17 -2.76 5.63 -91.87 -0.52 -3.28 16 11 H 0.12 1.73 8.14 -51.93 -0.42 1.30 16 12 C 0.56 10.97 6.16 -10.98 -0.07 10.90 16 13 O -0.57 -12.81 17.06 5.56 0.09 -12.72 16 14 N -0.63 -12.74 3.61 -178.45 -0.64 -13.38 16 15 C 0.10 2.10 8.39 -2.98 -0.02 2.08 16 16 C 0.04 0.86 3.61 -90.87 -0.33 0.53 16 17 C -0.52 -12.95 8.77 -34.44 -0.30 -13.25 16 18 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.88 -22.95 13.27 55.43 0.74 -22.21 16 21 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.11 2.20 7.69 -3.00 -0.02 2.18 16 26 C -0.08 -1.18 5.52 -26.48 -0.15 -1.32 16 27 C 0.05 0.73 4.92 -3.73 -0.02 0.71 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.80 7.35 -51.93 -0.38 0.42 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.11 6.04 -51.93 -0.31 0.80 16 32 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.04 0.61 7.27 -51.93 -0.38 0.23 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 41 H 0.10 1.53 7.80 -51.93 -0.40 1.13 16 42 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 45 H 0.06 1.56 8.13 -51.93 -0.42 1.14 16 46 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 47 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 48 H 0.06 1.27 5.93 -51.92 -0.31 0.97 16 49 H 0.07 1.18 6.77 -51.93 -0.35 0.83 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 51 H 0.08 1.20 5.43 -51.93 -0.28 0.92 16 52 H 0.05 1.00 6.18 -51.93 -0.32 0.68 16 LS Contribution 399.99 15.07 6.03 6.03 Total: -1.00 -26.78 399.99 -11.04 -37.82 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -9.46 Total: 5.36 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.83 Total: -7.30 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.85 Total: -43.94 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -26.78 -11.04 -37.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278120246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.991 kcal (2) G-P(sol) polarization free energy of solvation -26.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds