Wall clock time and date at job start Tue Mar 31 2020 12:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46642 * 2 1 4 4 C 1.53005 * 109.47208 * 119.99550 * 2 1 3 5 5 N 1.46899 * 109.46923 * 61.27220 * 4 2 1 6 6 C 1.46797 * 110.99922 * 175.83726 * 5 4 2 7 7 C 1.53263 * 109.45317 * 170.80445 * 6 5 4 8 8 C 1.53216 * 108.62408 * 55.56990 * 7 6 5 9 9 C 1.52737 * 117.84352 * 163.01880 * 8 7 6 10 10 C 1.52765 * 117.78340 * 94.01795 * 8 7 6 11 11 H 1.08998 * 117.50929 * 0.32404 * 10 8 7 12 12 C 1.50699 * 117.50472 * 215.29217 * 10 8 7 13 13 O 1.21281 * 120.00054 * 272.74856 * 12 10 8 14 14 N 1.34780 * 120.00007 * 92.75038 * 12 10 8 15 15 C 1.47577 * 134.49319 * 180.02562 * 14 12 10 16 16 C 1.53943 * 86.11987 * 155.35823 * 15 14 12 17 17 C 1.50700 * 113.74723 * 137.94980 * 16 15 14 18 18 H 1.08007 * 119.99529 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00257 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00314 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99898 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47298 * 179.97438 * 21 19 17 23 23 H 1.48505 * 109.47325 * 299.99275 * 21 19 17 24 24 H 1.48496 * 109.47321 * 59.99656 * 21 19 17 25 25 C 1.47577 * 134.49276 * 359.97438 * 14 12 10 26 26 C 1.53217 * 114.75732 * 308.61565 * 8 7 6 27 27 C 1.46817 * 110.99719 * 51.13065 * 5 4 2 28 28 H 1.09003 * 109.47024 * 60.00668 * 1 2 3 29 29 H 1.09002 * 109.46518 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47269 * 299.99954 * 1 2 3 31 31 H 1.08997 * 109.47269 * 240.00046 * 2 1 3 32 32 H 1.09012 * 109.47041 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47234 * 299.99714 * 3 2 1 34 34 H 1.08994 * 109.47759 * 60.00077 * 3 2 1 35 35 H 1.09000 * 109.46833 * 301.27488 * 4 2 1 36 36 H 1.08995 * 109.47098 * 181.27693 * 4 2 1 37 37 H 1.08996 * 109.47717 * 50.80892 * 6 5 4 38 38 H 1.08997 * 109.48342 * 290.80148 * 6 5 4 39 39 H 1.08999 * 109.60875 * 295.83530 * 7 6 5 40 40 H 1.08995 * 109.75649 * 175.39894 * 7 6 5 41 41 H 1.08998 * 117.50736 * 144.79075 * 9 8 7 42 42 H 1.09000 * 117.49856 * 359.74328 * 9 8 7 43 43 H 1.08996 * 113.77118 * 41.05382 * 15 14 12 44 44 H 1.09002 * 113.87242 * 269.67226 * 15 14 12 45 45 H 1.09004 * 113.74021 * 269.15854 * 16 15 14 46 46 H 0.96998 * 120.00661 * 180.02562 * 20 19 17 47 47 H 1.09000 * 113.77074 * 90.33846 * 25 14 12 48 48 H 1.09012 * 113.76620 * 318.94250 * 25 14 12 49 49 H 1.08994 * 109.61664 * 171.12612 * 26 8 7 50 50 H 1.09002 * 109.61065 * 291.64853 * 26 8 7 51 51 H 1.09003 * 109.47407 * 309.18548 * 27 5 4 52 52 H 1.08996 * 109.47485 * 69.19590 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5756 -2.1147 1.2341 6 6 2.1276 -2.8656 2.3684 7 6 1.4479 -4.2367 2.4521 8 6 1.6174 -4.9498 1.1066 9 6 1.3813 -6.4582 1.0640 10 6 2.8022 -5.9012 0.9492 11 1 3.4637 -6.0276 1.8062 12 6 3.4681 -5.9661 -0.4011 13 8 3.0488 -6.7261 -1.2481 14 7 4.5297 -5.1796 -0.6674 15 6 5.4025 -4.9827 -1.8411 16 6 5.6782 -3.5800 -1.2697 17 6 7.1234 -3.1620 -1.3583 18 1 7.8527 -3.8290 -1.7939 19 6 7.5145 -1.9282 -0.8833 20 7 6.6264 -1.1159 -0.3534 21 14 9.3057 -1.4099 -0.9938 22 1 9.4639 -0.0498 -0.4189 23 1 10.1466 -2.3696 -0.2341 24 1 9.7307 -1.3978 -2.4166 25 6 5.2856 -4.1686 0.0971 26 6 1.1967 -4.1251 -0.1142 27 6 1.8914 -2.7605 -0.0460 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6581 -0.2206 2.1391 36 1 3.1297 -0.7014 1.2608 37 1 1.9480 -2.3141 3.2912 38 1 3.2002 -2.9997 2.2281 39 1 0.3871 -4.1067 2.6660 40 1 1.9103 -4.8296 3.2412 41 1 0.9283 -6.8716 0.1629 42 1 1.1077 -6.9514 1.9967 43 1 4.8668 -4.9729 -2.7903 44 1 6.2780 -5.6319 -1.8536 45 1 4.9916 -2.8154 -1.6331 46 1 6.9015 -0.2477 -0.0196 47 1 6.1263 -4.5790 0.6566 48 1 4.6565 -3.5090 0.6950 49 1 1.4954 -4.6424 -1.0259 50 1 0.1156 -3.9860 -0.1068 51 1 1.5411 -2.1331 -0.8657 52 1 2.9696 -2.8970 -0.1280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278120246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:24 Heat of formation + Delta-G solvation = -2.908557 kcal Electronic energy + Delta-G solvation = -29474.224149 eV Core-core repulsion = 25860.274010 eV Total energy + Delta-G solvation = -3613.950140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.66761 -40.15509 -38.99885 -37.68440 -35.29003 -34.63551 -31.99228 -31.20338 -30.58502 -27.91472 -27.46938 -26.92415 -26.05536 -24.50831 -24.39972 -22.67027 -21.81083 -20.58691 -20.17080 -19.23689 -18.78250 -17.79520 -17.23955 -16.95818 -16.51318 -16.35229 -16.01782 -15.91920 -15.31422 -15.29790 -14.82925 -14.57245 -14.32896 -14.11022 -14.01051 -13.69485 -13.44970 -13.36767 -13.16796 -13.14573 -13.00004 -12.92559 -12.77115 -12.64019 -12.59153 -12.42520 -12.25280 -12.12684 -11.78677 -11.76357 -11.60204 -11.48352 -11.19336 -11.11945 -10.90592 -10.83143 -10.60690 -10.46616 -9.56008 -9.19180 -8.16860 -6.28038 1.45091 1.46298 1.52714 1.54834 1.96412 2.43723 2.74005 2.99776 3.13126 3.41876 3.68727 3.76336 3.83337 3.87470 4.01005 4.09135 4.25536 4.28315 4.31247 4.36909 4.43372 4.49818 4.51243 4.56035 4.58110 4.62953 4.73910 4.74476 4.79762 4.81447 4.85375 4.86843 4.87712 4.93925 4.97771 5.00259 5.06593 5.08933 5.10707 5.16364 5.19235 5.28669 5.31855 5.36974 5.46835 5.56591 5.57899 5.78664 6.14056 6.20915 6.22029 6.77825 6.88673 7.18686 7.41359 8.91382 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.008933 B = 0.005868 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.830325 B = 4770.530683 C = 7020.206214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 C -0.141 4.141 4 C 0.065 3.935 5 N -0.521 5.521 6 C 0.054 3.946 7 C -0.065 4.065 8 C -0.087 4.087 9 C -0.124 4.124 10 C -0.195 4.195 11 H 0.132 0.868 12 C 0.554 3.446 13 O -0.600 6.600 14 N -0.633 5.633 15 C 0.103 3.897 16 C 0.034 3.966 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.028 3.972 20 N -0.908 5.908 21 Si 0.951 3.049 22 H -0.286 1.286 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.128 3.872 26 C -0.074 4.074 27 C 0.056 3.944 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.008 0.992 37 H 0.092 0.908 38 H 0.012 0.988 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.032 0.968 46 H 0.263 0.737 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.038 0.962 50 H 0.090 0.910 51 H 0.072 0.928 52 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.098 0.210 8.193 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.117 4.117 3 C -0.199 4.199 4 C -0.062 4.062 5 N -0.246 5.246 6 C -0.074 4.074 7 C -0.102 4.102 8 C -0.088 4.088 9 C -0.161 4.161 10 C -0.216 4.216 11 H 0.150 0.850 12 C 0.346 3.654 13 O -0.483 6.483 14 N -0.365 5.365 15 C -0.019 4.019 16 C 0.014 3.986 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.173 4.173 20 N -0.545 5.545 21 Si 0.777 3.223 22 H -0.212 1.212 23 H -0.195 1.195 24 H -0.199 1.199 25 C 0.005 3.995 26 C -0.112 4.112 27 C -0.072 4.072 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.027 0.973 37 H 0.110 0.890 38 H 0.030 0.970 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.152 0.848 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.108 0.892 51 H 0.091 0.909 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -12.992 -0.115 7.937 15.225 hybrid contribution 2.439 0.306 -0.592 2.528 sum -10.553 0.191 7.346 12.859 Atomic orbital electron populations 1.21633 0.93132 1.02105 1.01487 1.21186 0.97586 0.95991 0.96899 1.21749 1.00124 0.95498 1.02496 1.22121 0.96309 0.88587 0.99232 1.61942 1.58826 1.01722 1.02072 1.22156 0.95717 0.95239 0.94317 1.21230 1.02639 0.93573 0.92790 1.21617 0.97661 0.91549 0.97963 1.23098 0.93471 0.94969 1.04529 1.22353 0.93208 1.10866 0.95125 0.85031 1.19924 0.79235 0.77449 0.88840 1.90592 1.66314 1.41130 1.50249 1.50309 1.28382 1.39401 1.18399 1.23395 0.91452 0.97777 0.89248 1.20287 0.96317 0.90476 0.91483 1.21198 0.93254 1.01854 1.40963 0.91965 1.25650 1.01085 0.96222 0.94365 1.70039 1.35136 1.09305 1.40040 0.85714 0.80758 0.77291 0.78512 1.21162 1.19469 1.19877 1.23357 0.91896 0.86252 0.97980 1.21138 1.01321 0.93857 0.94849 1.22091 0.97365 0.95019 0.92677 0.92999 0.92347 0.91961 0.93350 0.94492 0.91976 0.91286 0.89353 0.97337 0.88973 0.96988 0.88613 0.89355 0.89339 0.84771 0.92345 0.90073 0.94962 0.92809 0.90981 0.92458 0.94366 0.89189 0.90926 0.96632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.93 71.98 0.64 -2.10 16 2 C -0.10 -2.60 2.42 -10.79 -0.03 -2.62 16 3 C -0.14 -3.47 9.19 71.98 0.66 -2.81 16 4 C 0.07 1.82 4.55 86.30 0.39 2.21 16 5 N -0.52 -14.17 4.00 -895.66 -3.58 -17.76 16 6 C 0.05 1.33 5.49 86.41 0.47 1.81 16 7 C -0.06 -1.34 5.87 30.75 0.18 -1.16 16 8 C -0.09 -2.27 2.02 -52.20 -0.11 -2.37 16 9 C -0.12 -3.04 9.51 30.52 0.29 -2.75 16 10 C -0.19 -5.93 5.63 -11.60 -0.07 -6.00 16 11 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 12 C 0.55 22.11 6.16 87.66 0.54 22.65 16 13 O -0.60 -27.56 17.06 -3.03 -0.05 -27.61 16 14 N -0.63 -26.24 3.61 -836.88 -3.02 -29.25 16 15 C 0.10 4.46 8.39 86.48 0.73 5.18 16 16 C 0.03 1.60 3.61 -10.89 -0.04 1.56 16 17 C -0.53 -27.24 8.77 25.60 0.22 -27.01 16 18 H 0.06 3.10 7.81 -2.91 -0.02 3.07 16 19 C 0.03 1.43 5.46 84.65 0.46 1.89 16 20 N -0.91 -48.65 13.27 21.44 0.28 -48.36 16 21 Si 0.95 40.81 29.54 68.60 2.03 42.83 16 22 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 C 0.13 5.45 7.69 86.47 0.66 6.11 16 26 C -0.07 -2.20 5.52 30.76 0.17 -2.03 16 27 C 0.06 1.81 4.92 86.41 0.43 2.24 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.35 7.35 -2.39 -0.02 1.33 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.53 6.04 -2.39 -0.01 1.52 16 32 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 38 H 0.01 0.37 7.27 -2.39 -0.02 0.35 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 41 H 0.09 2.49 7.80 -2.39 -0.02 2.47 16 42 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.08 3.34 8.09 -2.39 -0.02 3.32 16 45 H 0.03 1.72 8.13 -2.39 -0.02 1.70 16 46 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 47 H 0.07 3.06 8.09 -2.39 -0.02 3.04 16 48 H 0.06 2.50 5.93 -2.38 -0.01 2.48 16 49 H 0.04 1.36 6.77 -2.39 -0.02 1.35 16 50 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.07 2.37 5.43 -2.39 -0.01 2.36 16 52 H 0.02 0.62 6.18 -2.39 -0.01 0.60 16 Total: -1.00 -59.77 399.99 2.15 -57.62 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.87 Total: 27.73 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.62 Total: -5.20 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -6.32 Total: -95.38 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.61 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -59.77 2.15 -57.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278120246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.713 kcal (2) G-P(sol) polarization free energy of solvation -59.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds