Wall clock time and date at job start Tue Mar 31 2020 12:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47296 * 2 1 4 4 C 1.53007 * 109.46555 * 119.99960 * 2 1 3 5 5 N 1.46898 * 109.47329 * 64.17925 * 4 2 1 6 6 C 1.46897 * 111.00235 * 174.89207 * 5 4 2 7 7 H 1.08999 * 110.35599 * 329.12265 * 6 5 4 8 8 C 1.55927 * 110.40334 * 206.66628 * 6 5 4 9 9 H 1.08997 * 115.91751 * 42.04621 * 8 6 5 10 10 C 1.55927 * 104.49543 * 170.92695 * 8 6 5 11 11 C 1.54589 * 104.64191 * 70.28038 * 10 8 6 12 12 C 1.55922 * 104.64271 * 359.97438 * 11 10 8 13 13 H 1.09001 * 115.92002 * 160.84150 * 12 11 10 14 14 C 1.56944 * 100.65002 * 274.98598 * 8 6 5 15 15 C 1.54583 * 110.40376 * 91.44126 * 6 5 4 16 16 H 1.09000 * 110.40499 * 237.69728 * 15 6 5 17 17 C 1.50698 * 110.40342 * 0.02562 * 15 6 5 18 18 O 1.21278 * 119.99976 * 65.12579 * 17 15 6 19 19 N 1.34778 * 119.99675 * 244.85380 * 17 15 6 20 20 C 1.47065 * 136.06023 * 354.90117 * 19 17 15 21 21 C 1.53232 * 88.08441 * 207.20071 * 20 19 17 22 22 C 1.50698 * 114.33217 * 220.46812 * 21 20 19 23 23 H 1.07999 * 120.00007 * 93.75670 * 22 21 20 24 24 C 1.37879 * 120.00169 * 273.76660 * 22 21 20 25 25 N 1.31523 * 119.99485 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00359 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46848 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47472 * 119.99824 * 26 24 22 29 29 H 1.48506 * 109.47043 * 239.99910 * 26 24 22 30 30 C 1.47069 * 136.05435 * 175.26812 * 19 17 15 31 31 H 1.08997 * 109.46505 * 64.96408 * 1 2 3 32 32 H 1.08993 * 109.47551 * 184.96695 * 1 2 3 33 33 H 1.09003 * 109.46959 * 304.97154 * 1 2 3 34 34 H 1.08993 * 109.46769 * 239.99411 * 2 1 3 35 35 H 1.09003 * 109.46659 * 184.98548 * 3 2 1 36 36 H 1.09002 * 109.46942 * 304.98385 * 3 2 1 37 37 H 1.08995 * 109.47549 * 64.98458 * 3 2 1 38 38 H 1.08993 * 109.47358 * 304.17348 * 4 2 1 39 39 H 1.09003 * 109.46335 * 184.17464 * 4 2 1 40 40 H 1.00898 * 111.00448 * 50.93213 * 5 4 2 41 41 H 1.08999 * 110.40157 * 189.06709 * 10 8 6 42 42 H 1.08993 * 110.40954 * 311.37199 * 10 8 6 43 43 H 1.08998 * 110.39958 * 118.79099 * 11 10 8 44 44 H 1.08998 * 110.39695 * 241.08493 * 11 10 8 45 45 H 1.09001 * 112.02807 * 63.17420 * 14 8 6 46 46 H 1.09001 * 112.02754 * 189.69566 * 14 8 6 47 47 H 1.09003 * 113.46762 * 321.93766 * 20 19 17 48 48 H 1.09002 * 113.46689 * 92.37281 * 20 19 17 49 49 H 1.09007 * 114.19785 * 87.72886 * 21 20 19 50 50 H 0.97003 * 119.99263 * 180.02562 * 25 24 22 51 51 H 1.09000 * 113.46965 * 267.62347 * 30 19 17 52 52 H 1.09002 * 113.46758 * 38.01318 * 30 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6344 -2.1323 1.2000 6 6 2.2088 -2.8848 2.3232 7 1 3.1704 -2.4603 2.6117 8 6 2.3672 -4.3893 1.9452 9 1 2.7432 -4.5915 0.9423 10 6 3.1914 -5.0018 3.1186 11 6 2.2196 -5.0012 4.3208 12 6 0.9001 -4.3877 3.7607 13 1 -0.0019 -4.5890 4.3387 14 6 0.9327 -4.9267 2.2866 15 6 1.2371 -2.8841 3.5254 16 1 1.7210 -2.4594 4.4049 17 6 -0.0130 -2.1122 3.1901 18 8 -0.7611 -2.5157 2.3251 19 7 -0.3023 -0.9763 3.8554 20 6 0.2718 -0.2384 4.9906 21 6 -1.1278 0.3194 5.2695 22 6 -1.1497 1.7747 5.6603 23 1 -1.3019 2.5338 4.9073 24 6 -0.9752 2.1371 6.9791 25 7 -0.7901 1.2126 7.8961 26 14 -1.0016 3.9410 7.4635 27 1 -1.2240 4.7748 6.2549 28 1 -2.0983 4.1763 8.4365 29 1 0.2974 4.3060 8.0839 30 6 -1.3350 0.0673 3.7696 31 1 -0.3632 0.4349 -0.9311 32 1 -0.3634 -1.0237 0.0890 33 1 -0.3633 0.5890 0.8421 34 1 1.8933 -0.5139 -0.8899 35 1 3.1264 1.4436 -0.0893 36 1 1.6057 1.9814 -0.8420 37 1 1.7515 1.9299 0.9312 38 1 1.6168 -0.2525 2.1377 39 1 3.1274 -0.6569 1.2875 40 1 1.8874 -2.5507 0.3174 41 1 3.4968 -6.0200 2.8774 42 1 4.0640 -4.3849 3.3328 43 1 2.0473 -6.0190 4.6707 44 1 2.6145 -4.3844 5.1281 45 1 0.1648 -4.4654 1.6657 46 1 0.8839 -6.0150 2.2479 47 1 0.6459 -0.8852 5.7842 48 1 0.9917 0.5241 4.6931 49 1 -1.7387 -0.3097 5.9171 50 1 -0.6676 1.4676 8.8240 51 1 -1.0475 0.9121 3.1438 52 1 -2.3244 -0.3200 3.5263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278121301.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:06 Heat of formation + Delta-G solvation = -5.562246 kcal Electronic energy + Delta-G solvation = -29468.285346 eV Core-core repulsion = 25854.220134 eV Total energy + Delta-G solvation = -3614.065212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.81559 -38.72588 -36.85986 -36.42643 -33.33836 -32.62040 -30.36376 -28.82424 -28.56988 -27.28102 -26.86790 -25.20696 -24.84589 -24.33764 -21.91859 -20.47073 -20.24606 -19.68421 -18.88988 -17.63162 -16.78822 -16.29507 -16.16997 -15.62534 -15.21235 -14.70198 -14.62394 -14.41117 -14.14381 -14.06335 -13.84862 -13.23576 -12.89010 -12.40002 -12.24026 -12.16703 -12.04142 -11.90756 -11.71522 -11.45149 -11.32582 -11.28187 -11.17202 -11.05644 -10.94425 -10.89027 -10.80048 -10.75303 -10.68119 -10.61843 -10.52780 -10.38977 -10.26848 -10.02956 -9.38236 -9.09893 -8.67159 -8.51234 -8.15078 -7.58633 -6.14709 -4.19498 3.23905 3.32946 3.36403 3.52956 3.81027 4.15884 4.36296 4.43629 4.60792 4.67403 4.93878 5.04835 5.14042 5.17656 5.20650 5.26473 5.29167 5.34285 5.44865 5.47403 5.56732 5.61741 5.64413 5.75277 5.80537 5.88684 5.92000 5.96924 6.00554 6.06835 6.10871 6.14126 6.15004 6.19008 6.20627 6.27860 6.30910 6.38803 6.42576 6.50669 6.58465 6.58999 6.70048 6.78699 6.80910 6.97683 7.20202 7.53391 7.62311 7.84159 8.24941 8.83702 8.85223 9.18665 9.47132 10.95096 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.004439 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.876438 B = 6305.556712 C = 7703.250789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.061 3.939 5 N -0.665 5.665 6 C 0.105 3.895 7 H 0.049 0.951 8 C -0.105 4.105 9 H 0.096 0.904 10 C -0.120 4.120 11 C -0.123 4.123 12 C -0.082 4.082 13 H 0.098 0.902 14 C -0.116 4.116 15 C -0.098 4.098 16 H 0.078 0.922 17 C 0.565 3.435 18 O -0.538 6.538 19 N -0.649 5.649 20 C 0.102 3.898 21 C 0.033 3.967 22 C -0.514 4.514 23 H 0.062 0.938 24 C 0.068 3.932 25 N -0.887 5.887 26 Si 0.892 3.108 27 H -0.271 1.271 28 H -0.283 1.283 29 H -0.284 1.284 30 C 0.105 3.895 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.021 0.979 40 H 0.337 0.663 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.262 0.738 51 H 0.066 0.934 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -8.967 -11.372 17.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.068 4.068 5 N -0.295 5.295 6 C -0.005 4.005 7 H 0.067 0.933 8 C -0.124 4.124 9 H 0.114 0.886 10 C -0.158 4.158 11 C -0.161 4.161 12 C -0.100 4.100 13 H 0.116 0.884 14 C -0.153 4.153 15 C -0.120 4.120 16 H 0.097 0.903 17 C 0.354 3.646 18 O -0.415 6.415 19 N -0.384 5.384 20 C -0.022 4.022 21 C 0.014 3.986 22 C -0.552 4.552 23 H 0.080 0.920 24 C -0.135 4.135 25 N -0.524 5.524 26 Si 0.720 3.280 27 H -0.196 1.196 28 H -0.209 1.209 29 H -0.210 1.210 30 C -0.017 4.017 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.039 0.961 40 H 0.155 0.845 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.117 0.883 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.072 0.928 51 H 0.084 0.916 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.299 -9.285 -11.437 16.908 hybrid contribution 1.282 1.083 0.322 1.709 sum 9.581 -8.202 -11.115 16.811 Atomic orbital electron populations 1.21742 0.93921 1.03595 1.00330 1.21067 0.97338 0.95446 0.96980 1.21820 1.00226 0.96222 1.02201 1.22150 0.96371 0.88922 0.99330 1.60428 1.62705 1.01582 1.04820 1.22510 0.94039 0.92985 0.91004 0.93345 1.23718 0.96985 0.94043 0.97657 0.88614 1.22605 0.97648 1.00476 0.95030 1.22663 0.95248 1.00774 0.97403 1.23362 0.97168 0.92508 0.97008 0.88393 1.23625 0.96601 0.99020 0.96100 1.22442 0.95215 0.96059 0.98274 0.90343 1.19322 0.85750 0.79690 0.79874 1.90525 1.50570 1.68323 1.32085 1.49972 1.32378 1.21441 1.34639 1.23384 1.01083 0.92416 0.85269 1.20281 0.91587 0.97037 0.89702 1.20966 1.50144 0.90930 0.93142 0.91957 1.25018 0.94476 0.97511 0.96517 1.69973 1.48285 1.32620 1.01511 0.86529 0.77672 0.85113 0.78674 1.19583 1.20895 1.20981 1.23163 0.90632 0.87652 1.00298 0.94185 0.90570 0.92921 0.92107 0.93279 0.92678 0.92264 0.90518 0.96075 0.84478 0.91817 0.92027 0.91716 0.91672 0.88334 0.92142 0.92837 0.91651 0.91682 0.92804 0.91617 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.13 37.16 0.34 -1.66 16 2 C -0.09 -1.12 3.02 -90.62 -0.27 -1.39 16 3 C -0.15 -1.70 9.19 37.15 0.34 -1.36 16 4 C 0.06 0.83 4.71 -3.82 -0.02 0.81 16 5 N -0.66 -8.91 3.82 -104.21 -0.40 -9.31 16 6 C 0.11 1.36 2.57 -65.32 -0.17 1.19 16 7 H 0.05 0.62 7.41 -51.93 -0.38 0.24 16 8 C -0.11 -1.15 4.58 -85.36 -0.39 -1.54 16 9 H 0.10 0.90 8.07 -51.93 -0.42 0.49 16 10 C -0.12 -1.19 6.21 -24.33 -0.15 -1.34 16 11 C -0.12 -1.37 6.21 -24.33 -0.15 -1.52 16 12 C -0.08 -1.12 4.49 -85.37 -0.38 -1.50 16 13 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 14 C -0.12 -1.48 6.26 -22.44 -0.14 -1.62 16 15 C -0.10 -1.50 2.72 -89.41 -0.24 -1.74 16 16 H 0.08 1.25 7.16 -51.93 -0.37 0.88 16 17 C 0.56 10.64 5.19 -10.99 -0.06 10.59 16 18 O -0.54 -11.23 14.99 5.56 0.08 -11.15 16 19 N -0.65 -13.07 3.46 -185.39 -0.64 -13.71 16 20 C 0.10 2.16 7.58 -8.65 -0.07 2.09 16 21 C 0.03 0.78 3.77 -91.40 -0.34 0.44 16 22 C -0.51 -13.17 8.83 -34.44 -0.30 -13.47 16 23 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 24 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -24.33 13.26 55.43 0.74 -23.59 16 26 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 C 0.10 2.22 8.19 -8.51 -0.07 2.15 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.26 7.26 -51.93 -0.38 0.89 16 39 H 0.02 0.27 7.95 -51.93 -0.41 -0.14 16 40 H 0.34 3.99 8.26 -39.29 -0.32 3.66 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 45 H 0.10 1.53 6.45 -51.93 -0.33 1.19 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 1.15 8.04 -51.93 -0.42 0.73 16 48 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 49 H 0.07 1.70 8.11 -51.92 -0.42 1.28 16 50 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 51 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 52 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -27.43 398.34 -11.12 -38.56 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -9.71 Total: 6.21 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -2.18 Total: -8.19 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.30 Total: -46.61 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -27.43 -11.12 -38.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278121301.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.996 kcal (2) G-P(sol) polarization free energy of solvation -27.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds