Wall clock time and date at job start Tue Mar 31 2020 12:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53010 * 109.46983 * 2 1 4 4 N 1.46894 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.48603 * 111.00455 * 52.56358 * 4 3 2 6 6 C 1.55112 * 103.33667 * 159.25865 * 5 4 3 7 7 C 1.53809 * 102.71501 * 323.24614 * 6 5 4 8 8 C 1.53466 * 110.59131 * 141.81907 * 7 6 5 9 9 C 1.55084 * 103.98737 * 97.94664 * 8 7 6 10 10 C 1.54956 * 102.85537 * 37.24430 * 9 8 7 11 11 C 1.53081 * 110.78654 * 260.84724 * 7 6 5 12 12 H 1.09007 * 110.09287 * 358.06163 * 11 7 6 13 13 C 1.50699 * 110.09432 * 119.59666 * 11 7 6 14 14 O 1.21273 * 120.00227 * 77.49224 * 13 11 7 15 15 N 1.34783 * 119.99820 * 257.49216 * 13 11 7 16 16 C 1.47061 * 136.05962 * 359.63201 * 15 13 11 17 17 C 1.53756 * 87.89006 * 152.96339 * 16 15 13 18 18 C 1.50700 * 114.26788 * 139.79232 * 17 16 15 19 19 H 1.08001 * 119.99796 * 266.47528 * 18 17 16 20 20 C 1.37879 * 120.00179 * 86.47291 * 18 17 16 21 21 N 1.31516 * 119.99704 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47110 * 90.00090 * 22 20 18 24 24 H 1.48493 * 109.47213 * 210.00283 * 22 20 18 25 25 H 1.48498 * 109.47090 * 330.00359 * 22 20 18 26 26 C 1.47068 * 136.05347 * 180.02562 * 15 13 11 27 27 C 1.48138 * 110.99948 * 170.00206 * 4 3 2 28 28 H 1.09003 * 109.47527 * 59.99740 * 1 2 3 29 29 H 1.09004 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47345 * 299.99718 * 1 2 3 31 31 H 1.08999 * 109.47345 * 240.00282 * 2 1 3 32 32 H 1.09001 * 109.47367 * 119.99742 * 2 1 3 33 33 H 1.09001 * 109.46858 * 300.00054 * 3 2 1 34 34 H 1.08999 * 109.46850 * 59.99978 * 3 2 1 35 35 H 1.09008 * 110.64492 * 277.71569 * 5 4 3 36 36 H 1.08996 * 110.64642 * 40.79128 * 5 4 3 37 37 H 1.09000 * 110.76304 * 204.94019 * 6 5 4 38 38 H 1.09004 * 110.92358 * 81.62660 * 6 5 4 39 39 H 1.08998 * 110.52553 * 216.57322 * 8 7 6 40 40 H 1.09004 * 110.52476 * 339.32067 * 8 7 6 41 41 H 1.08993 * 110.73756 * 278.90164 * 9 8 7 42 42 H 1.09006 * 110.88683 * 155.65633 * 9 8 7 43 43 H 1.09002 * 110.48343 * 203.81731 * 10 9 8 44 44 H 1.09007 * 110.59312 * 81.24111 * 10 9 8 45 45 H 1.09001 * 113.46865 * 267.69831 * 16 15 13 46 46 H 1.09004 * 113.46974 * 38.13230 * 16 15 13 47 47 H 1.09002 * 114.39254 * 272.67510 * 17 16 15 48 48 H 0.96998 * 119.99890 * 179.97438 * 21 20 18 49 49 H 1.09003 * 113.46980 * 321.85941 * 26 15 13 50 50 H 1.08994 * 113.46979 * 92.30405 * 26 15 13 51 51 H 1.08998 * 109.99924 * 333.63826 * 27 4 3 52 52 H 1.08995 * 110.00612 * 94.99148 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0410 0.5994 -1.1025 6 6 5.4869 1.1283 -1.2915 7 6 5.3286 2.6394 -1.0520 8 6 6.5357 3.1934 -0.2830 9 6 7.4404 3.7959 -1.3892 10 6 6.4155 4.4028 -2.3803 11 6 5.2453 3.3943 -2.3811 12 1 5.3508 2.6990 -3.2140 13 6 3.9308 4.1245 -2.4803 14 8 3.7663 5.1622 -1.8746 15 7 2.9378 3.6243 -3.2422 16 6 2.7538 2.4451 -4.1015 17 6 1.2476 2.5353 -3.8058 18 6 0.3652 2.2613 -4.9962 19 1 0.0140 3.0793 -5.6077 20 6 0.0062 0.9663 -5.3048 21 7 0.4335 -0.0298 -4.5599 22 14 -1.0882 0.6268 -6.7801 23 1 -0.2448 0.4164 -7.9841 24 1 -1.8994 -0.5905 -6.5249 25 1 -1.9904 1.7848 -7.0040 26 6 1.5640 4.0213 -3.5856 27 6 4.0397 2.8046 -0.2407 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 4.0510 -0.4512 -0.8121 36 1 3.4575 0.7423 -2.0120 37 1 5.8408 0.9325 -2.3037 38 1 6.1613 0.6891 -0.5563 39 1 6.2206 3.9674 0.4167 40 1 7.0556 2.3915 0.2413 41 1 8.0299 3.0168 -1.8725 42 1 8.0888 4.5714 -0.9813 43 1 6.8501 4.4836 -3.3766 44 1 6.0774 5.3790 -2.0323 45 1 3.0025 2.6268 -5.1471 46 1 3.2219 1.5432 -3.7070 47 1 0.9332 2.0069 -2.9057 48 1 0.1806 -0.9407 -4.7768 49 1 1.0183 4.4624 -2.7515 50 1 1.4992 4.6182 -4.4953 51 1 3.3162 3.3923 -0.8058 52 1 4.2569 3.2930 0.7091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278192512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:10 Heat of formation + Delta-G solvation = -6.159772 kcal Electronic energy + Delta-G solvation = -30066.182509 eV Core-core repulsion = 26452.091386 eV Total energy + Delta-G solvation = -3614.091123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.94353 -38.74466 -37.33764 -36.19834 -33.44244 -32.72795 -30.25333 -30.08848 -28.92236 -28.30324 -25.55707 -25.09949 -25.02519 -23.02027 -21.99380 -21.34251 -20.40806 -19.95607 -19.09235 -17.65477 -16.94348 -16.46183 -15.96483 -15.46737 -15.20971 -14.87598 -14.66639 -14.44108 -14.33536 -13.99312 -13.75258 -13.07714 -12.96357 -12.70078 -12.40402 -12.17853 -12.02846 -11.86397 -11.74243 -11.59540 -11.47213 -11.34597 -11.28235 -11.04346 -11.02705 -10.95348 -10.83942 -10.68100 -10.53919 -10.44673 -10.40923 -10.36306 -10.21810 -10.11841 -9.58059 -9.25626 -8.95741 -8.62160 -8.03048 -7.90669 -6.22669 -4.27876 3.09301 3.19936 3.28279 3.30788 3.54301 4.28106 4.29500 4.47983 4.56343 4.66631 5.05497 5.12711 5.13920 5.23549 5.30535 5.39487 5.46973 5.48019 5.53076 5.62682 5.67446 5.73220 5.86685 5.88993 5.93725 5.96689 5.99215 6.00290 6.05860 6.07183 6.10370 6.14335 6.16202 6.20376 6.24360 6.28326 6.33640 6.38597 6.40582 6.42323 6.46048 6.52622 6.61486 6.65274 6.70485 6.77474 7.18219 7.37201 7.50271 7.74541 8.13047 8.48804 8.74126 8.75608 9.38927 10.86401 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.005094 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.021190 B = 5495.436561 C = 6663.744160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.046 3.954 4 N -0.516 5.516 5 C 0.030 3.970 6 C -0.111 4.111 7 C -0.054 4.054 8 C -0.105 4.105 9 C -0.121 4.121 10 C -0.111 4.111 11 C -0.099 4.099 12 H 0.087 0.913 13 C 0.546 3.454 14 O -0.566 6.566 15 N -0.644 5.644 16 C 0.096 3.904 17 C 0.040 3.960 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.072 3.928 21 N -0.881 5.881 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.097 3.903 27 C 0.035 3.965 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.263 0.737 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 0.539 6.457 11.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.082 4.082 4 N -0.240 5.240 5 C -0.097 4.097 6 C -0.149 4.149 7 C -0.055 4.055 8 C -0.142 4.142 9 C -0.159 4.159 10 C -0.149 4.149 11 C -0.120 4.120 12 H 0.105 0.895 13 C 0.337 3.663 14 O -0.447 6.447 15 N -0.377 5.377 16 C -0.026 4.026 17 C 0.021 3.979 18 C -0.557 4.557 19 H 0.080 0.920 20 C -0.132 4.132 21 N -0.517 5.517 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.026 4.026 27 C -0.093 4.093 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.088 0.761 7.436 12.555 hybrid contribution -0.861 -0.003 -1.762 1.961 sum 9.227 0.758 5.674 10.858 Atomic orbital electron populations 1.21685 0.95548 1.01459 1.01868 1.21497 0.95892 0.96037 1.02038 1.22341 0.87311 0.97562 1.01001 1.64926 1.08145 1.08066 1.42882 1.23360 0.94447 0.97983 0.93955 1.22656 0.97261 0.93375 1.01627 1.21256 0.95830 0.95170 0.93258 1.22399 0.94628 1.00046 0.97174 1.22507 0.97155 0.99783 0.96425 1.22401 0.93905 0.99059 0.99551 1.22005 0.93324 0.97947 0.98746 0.89469 1.19795 0.84003 0.84187 0.78364 1.90637 1.81749 1.24736 1.47567 1.50134 1.14566 1.27922 1.45047 1.23704 1.00667 0.85444 0.92801 1.20361 0.90417 0.88759 0.98368 1.20882 1.30864 0.92707 1.11206 0.91987 1.24978 0.95476 0.96240 0.96507 1.69936 1.44383 0.99364 1.38033 0.86585 0.80673 0.77959 0.82779 1.20572 1.21117 1.19751 1.23346 0.79674 1.01168 0.98369 1.23288 0.95275 0.91111 0.99620 0.91682 0.93003 0.93575 0.91324 0.92290 0.93627 0.91630 0.90369 0.92192 0.91073 0.90671 0.91230 0.91184 0.91548 0.91479 0.91666 0.89971 0.90994 0.92324 0.91425 0.92683 0.92731 0.91003 0.91573 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.15 0.37 -1.87 16 2 C -0.12 -1.81 5.60 -26.73 -0.15 -1.96 16 3 C 0.05 0.76 5.03 -3.82 -0.02 0.74 16 4 N -0.52 -8.22 5.41 -230.59 -1.25 -9.47 16 5 C 0.03 0.46 5.11 -1.76 -0.01 0.45 16 6 C -0.11 -1.46 6.16 -25.19 -0.16 -1.62 16 7 C -0.05 -0.76 0.82 -153.70 -0.13 -0.89 16 8 C -0.10 -1.26 5.88 -25.39 -0.15 -1.41 16 9 C -0.12 -1.32 6.92 -24.60 -0.17 -1.49 16 10 C -0.11 -1.49 6.34 -24.92 -0.16 -1.64 16 11 C -0.10 -1.52 2.90 -90.95 -0.26 -1.78 16 12 H 0.09 1.32 6.81 -51.93 -0.35 0.96 16 13 C 0.55 10.40 4.57 -10.98 -0.05 10.35 16 14 O -0.57 -12.29 15.87 5.56 0.09 -12.20 16 15 N -0.64 -12.71 3.67 -185.05 -0.68 -13.39 16 16 C 0.10 1.95 7.68 -8.37 -0.06 1.89 16 17 C 0.04 0.90 3.79 -91.11 -0.35 0.55 16 18 C -0.52 -12.75 8.83 -34.44 -0.30 -13.05 16 19 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.88 -22.65 13.26 55.43 0.74 -21.92 16 22 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 C 0.10 1.99 8.17 -8.49 -0.07 1.92 16 27 C 0.03 0.57 5.57 -3.04 -0.02 0.55 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.16 6.79 -51.93 -0.35 0.81 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.88 6.87 -51.93 -0.36 0.53 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.13 7.69 -51.92 -0.40 0.73 16 36 H 0.06 1.07 6.06 -51.93 -0.31 0.76 16 37 H 0.07 0.89 7.35 -51.93 -0.38 0.51 16 38 H 0.07 0.89 7.41 -51.93 -0.38 0.51 16 39 H 0.07 0.87 7.51 -51.93 -0.39 0.49 16 40 H 0.07 0.75 7.39 -51.93 -0.38 0.37 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.25 7.06 -51.92 -0.37 0.88 16 45 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 46 H 0.06 1.19 6.22 -51.93 -0.32 0.86 16 47 H 0.07 1.66 7.16 -51.93 -0.37 1.28 16 48 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 49 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 51 H 0.07 1.28 3.96 -51.93 -0.21 1.08 16 52 H 0.07 1.21 7.35 -51.93 -0.38 0.83 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -26.35 389.02 -11.20 -37.55 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -9.16 Total: 6.55 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.78 Total: -7.55 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -1.19 Total: -44.77 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -26.35 -11.20 -37.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278192512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.386 kcal (2) G-P(sol) polarization free energy of solvation -26.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds