Wall clock time and date at job start Tue Mar 31 2020 12:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53010 * 109.46983 * 2 1 4 4 N 1.46894 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.48603 * 111.00455 * 52.56358 * 4 3 2 6 6 C 1.55112 * 103.33667 * 159.25865 * 5 4 3 7 7 C 1.53809 * 102.71501 * 323.24614 * 6 5 4 8 8 C 1.53466 * 110.59131 * 141.81907 * 7 6 5 9 9 C 1.55084 * 103.98737 * 97.94664 * 8 7 6 10 10 C 1.54956 * 102.85537 * 37.24430 * 9 8 7 11 11 C 1.53081 * 110.78654 * 260.84724 * 7 6 5 12 12 H 1.09007 * 110.09287 * 358.06163 * 11 7 6 13 13 C 1.50699 * 110.09432 * 119.59666 * 11 7 6 14 14 O 1.21273 * 120.00227 * 77.49224 * 13 11 7 15 15 N 1.34783 * 119.99820 * 257.49216 * 13 11 7 16 16 C 1.47061 * 136.05962 * 359.63201 * 15 13 11 17 17 C 1.53756 * 87.89006 * 152.96339 * 16 15 13 18 18 C 1.50700 * 114.26788 * 139.79232 * 17 16 15 19 19 H 1.08001 * 119.99796 * 266.47528 * 18 17 16 20 20 C 1.37879 * 120.00179 * 86.47291 * 18 17 16 21 21 N 1.31516 * 119.99704 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47110 * 90.00090 * 22 20 18 24 24 H 1.48493 * 109.47213 * 210.00283 * 22 20 18 25 25 H 1.48498 * 109.47090 * 330.00359 * 22 20 18 26 26 C 1.47068 * 136.05347 * 180.02562 * 15 13 11 27 27 C 1.48138 * 110.99948 * 170.00206 * 4 3 2 28 28 H 1.09003 * 109.47527 * 59.99740 * 1 2 3 29 29 H 1.09004 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47345 * 299.99718 * 1 2 3 31 31 H 1.08999 * 109.47345 * 240.00282 * 2 1 3 32 32 H 1.09001 * 109.47367 * 119.99742 * 2 1 3 33 33 H 1.09001 * 109.46858 * 300.00054 * 3 2 1 34 34 H 1.08999 * 109.46850 * 59.99978 * 3 2 1 35 35 H 1.09008 * 110.64492 * 277.71569 * 5 4 3 36 36 H 1.08996 * 110.64642 * 40.79128 * 5 4 3 37 37 H 1.09000 * 110.76304 * 204.94019 * 6 5 4 38 38 H 1.09004 * 110.92358 * 81.62660 * 6 5 4 39 39 H 1.08998 * 110.52553 * 216.57322 * 8 7 6 40 40 H 1.09004 * 110.52476 * 339.32067 * 8 7 6 41 41 H 1.08993 * 110.73756 * 278.90164 * 9 8 7 42 42 H 1.09006 * 110.88683 * 155.65633 * 9 8 7 43 43 H 1.09002 * 110.48343 * 203.81731 * 10 9 8 44 44 H 1.09007 * 110.59312 * 81.24111 * 10 9 8 45 45 H 1.09001 * 113.46865 * 267.69831 * 16 15 13 46 46 H 1.09004 * 113.46974 * 38.13230 * 16 15 13 47 47 H 1.09002 * 114.39254 * 272.67510 * 17 16 15 48 48 H 0.96998 * 119.99890 * 179.97438 * 21 20 18 49 49 H 1.09003 * 113.46980 * 321.85941 * 26 15 13 50 50 H 1.08994 * 113.46979 * 92.30405 * 26 15 13 51 51 H 1.08998 * 109.99924 * 333.63826 * 27 4 3 52 52 H 1.08995 * 110.00612 * 94.99148 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0410 0.5994 -1.1025 6 6 5.4869 1.1283 -1.2915 7 6 5.3286 2.6394 -1.0520 8 6 6.5357 3.1934 -0.2830 9 6 7.4404 3.7959 -1.3892 10 6 6.4155 4.4028 -2.3803 11 6 5.2453 3.3943 -2.3811 12 1 5.3508 2.6990 -3.2140 13 6 3.9308 4.1245 -2.4803 14 8 3.7663 5.1622 -1.8746 15 7 2.9378 3.6243 -3.2422 16 6 2.7538 2.4451 -4.1015 17 6 1.2476 2.5353 -3.8058 18 6 0.3652 2.2613 -4.9962 19 1 0.0140 3.0793 -5.6077 20 6 0.0062 0.9663 -5.3048 21 7 0.4335 -0.0298 -4.5599 22 14 -1.0882 0.6268 -6.7801 23 1 -0.2448 0.4164 -7.9841 24 1 -1.8994 -0.5905 -6.5249 25 1 -1.9904 1.7848 -7.0040 26 6 1.5640 4.0213 -3.5856 27 6 4.0397 2.8046 -0.2407 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 4.0510 -0.4512 -0.8121 36 1 3.4575 0.7423 -2.0120 37 1 5.8408 0.9325 -2.3037 38 1 6.1613 0.6891 -0.5563 39 1 6.2206 3.9674 0.4167 40 1 7.0556 2.3915 0.2413 41 1 8.0299 3.0168 -1.8725 42 1 8.0888 4.5714 -0.9813 43 1 6.8501 4.4836 -3.3766 44 1 6.0774 5.3790 -2.0323 45 1 3.0025 2.6268 -5.1471 46 1 3.2219 1.5432 -3.7070 47 1 0.9332 2.0069 -2.9057 48 1 0.1806 -0.9407 -4.7768 49 1 1.0183 4.4624 -2.7515 50 1 1.4992 4.6182 -4.4953 51 1 3.3162 3.3923 -0.8058 52 1 4.2569 3.2930 0.7091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278192512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:09 Heat of formation + Delta-G solvation = -20.260898 kcal Electronic energy + Delta-G solvation = -30066.793980 eV Core-core repulsion = 26452.091386 eV Total energy + Delta-G solvation = -3614.702594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.28836 -40.27932 -38.85063 -37.51927 -34.70296 -34.60747 -31.64065 -31.38296 -30.11254 -29.74017 -27.03372 -26.78370 -26.63274 -24.23468 -23.27099 -22.75829 -21.59940 -21.35603 -20.50706 -19.13450 -18.71811 -18.05046 -17.29616 -16.88356 -16.60427 -16.46435 -16.01649 -15.90964 -15.57691 -15.45663 -15.11011 -14.43869 -14.34789 -14.14361 -13.92186 -13.50924 -13.39190 -13.30805 -13.23499 -13.00587 -12.90711 -12.85197 -12.62472 -12.60968 -12.50303 -12.24761 -12.18912 -11.99544 -11.92669 -11.72568 -11.60535 -11.54763 -11.39668 -11.31018 -11.26825 -11.06922 -10.66219 -10.48418 -9.58993 -9.41203 -8.15453 -6.26332 1.44779 1.48118 1.55962 1.58690 1.97783 2.45233 2.98479 3.13550 3.27451 3.41555 3.53495 3.79159 3.98444 4.03499 4.08907 4.20889 4.24033 4.28982 4.31953 4.34253 4.37655 4.43903 4.45746 4.51477 4.59991 4.62852 4.65345 4.69040 4.76884 4.79113 4.82030 4.84931 4.88554 4.93671 4.98896 4.99398 5.03136 5.08091 5.13653 5.18583 5.20680 5.26356 5.29882 5.33236 5.37079 5.47993 5.59247 5.80909 5.88882 6.02091 6.22649 6.79801 6.89289 7.16175 7.42891 8.93112 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.005094 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.021190 B = 5495.436561 C = 6663.744160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C 0.052 3.948 4 N -0.509 5.509 5 C 0.030 3.970 6 C -0.102 4.102 7 C -0.052 4.052 8 C -0.102 4.102 9 C -0.109 4.109 10 C -0.111 4.111 11 C -0.097 4.097 12 H 0.092 0.908 13 C 0.544 3.456 14 O -0.596 6.596 15 N -0.644 5.644 16 C 0.115 3.885 17 C 0.037 3.963 18 C -0.533 4.533 19 H 0.061 0.939 20 C 0.031 3.969 21 N -0.904 5.904 22 Si 0.951 3.049 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.271 1.271 26 C 0.099 3.901 27 C 0.035 3.965 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.008 0.992 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.027 0.973 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.038 0.962 48 H 0.264 0.736 49 H 0.046 0.954 50 H 0.080 0.920 51 H 0.032 0.968 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.154 -0.324 6.627 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C -0.076 4.076 4 N -0.232 5.232 5 C -0.098 4.098 6 C -0.139 4.139 7 C -0.054 4.054 8 C -0.139 4.139 9 C -0.147 4.147 10 C -0.149 4.149 11 C -0.118 4.118 12 H 0.111 0.889 13 C 0.337 3.663 14 O -0.479 6.479 15 N -0.377 5.377 16 C -0.008 4.008 17 C 0.017 3.983 18 C -0.571 4.571 19 H 0.079 0.921 20 C -0.170 4.170 21 N -0.542 5.542 22 Si 0.777 3.223 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.196 1.196 26 C -0.023 4.023 27 C -0.093 4.093 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.026 0.974 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.050 0.950 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.376 -0.095 7.602 14.525 hybrid contribution -1.648 0.316 -1.754 2.427 sum 10.729 0.221 5.848 12.221 Atomic orbital electron populations 1.21632 0.95402 1.01983 1.01015 1.21412 0.95950 0.95090 1.02040 1.22251 0.88047 0.97988 0.99318 1.64971 1.07350 1.07986 1.42923 1.23363 0.95596 0.98556 0.92263 1.22677 0.95901 0.92177 1.03167 1.21315 0.95599 0.96015 0.92439 1.22404 0.93765 1.00505 0.97268 1.22499 0.96428 1.00630 0.95119 1.22431 0.93738 0.97415 1.01300 1.22121 0.91558 0.98389 0.99741 0.88948 1.20540 0.84845 0.83905 0.77007 1.90612 1.82503 1.26303 1.48460 1.50125 1.14467 1.27689 1.45383 1.23393 0.98829 0.85619 0.92942 1.20164 0.91700 0.89696 0.96708 1.21127 1.31378 0.92891 1.11665 0.92106 1.25618 0.96602 0.96081 0.98736 1.70041 1.45322 0.99542 1.39255 0.85669 0.79085 0.77550 0.80018 1.19959 1.21179 1.19567 1.23226 0.80594 1.00074 0.98422 1.23266 0.95772 0.90777 0.99516 0.95019 0.91754 0.91860 0.93048 0.90231 0.97410 0.91237 0.89294 0.95465 0.89887 0.88174 0.92159 0.88899 0.89384 0.89761 0.90153 0.92220 0.90594 0.92371 0.94343 0.92721 0.93504 0.90198 0.95004 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.91 71.98 0.71 -3.71 16 2 C -0.11 -3.37 5.60 30.60 0.17 -3.20 16 3 C 0.05 1.81 5.03 86.31 0.43 2.24 16 4 N -0.51 -16.15 5.41 -883.44 -4.78 -20.93 16 5 C 0.03 0.89 5.11 86.70 0.44 1.33 16 6 C -0.10 -2.40 6.16 31.59 0.19 -2.21 16 7 C -0.05 -1.40 0.82 -51.66 -0.04 -1.44 16 8 C -0.10 -2.13 5.88 31.46 0.19 -1.94 16 9 C -0.11 -1.97 6.92 31.98 0.22 -1.74 16 10 C -0.11 -2.74 6.34 31.77 0.20 -2.53 16 11 C -0.10 -2.87 2.90 -11.01 -0.03 -2.90 16 12 H 0.09 2.64 6.81 -2.38 -0.02 2.62 16 13 C 0.54 21.14 4.57 87.66 0.40 21.54 16 14 O -0.60 -26.64 15.87 -3.01 -0.05 -26.69 16 15 N -0.64 -26.29 3.67 -857.75 -3.15 -29.44 16 16 C 0.11 4.78 7.68 83.27 0.64 5.42 16 17 C 0.04 1.72 3.79 -11.11 -0.04 1.68 16 18 C -0.53 -26.84 8.83 25.60 0.23 -26.61 16 19 H 0.06 3.02 7.81 -2.91 -0.02 2.99 16 20 C 0.03 1.58 5.46 84.65 0.46 2.04 16 21 N -0.90 -47.64 13.26 21.45 0.28 -47.35 16 22 Si 0.95 40.39 29.54 68.60 2.03 42.41 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 C 0.10 4.29 8.17 83.19 0.68 4.97 16 27 C 0.03 1.14 5.57 86.13 0.48 1.62 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.79 6.79 -2.39 -0.02 1.77 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.01 0.32 6.87 -2.39 -0.02 0.31 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.46 7.69 -2.38 -0.02 2.44 16 36 H 0.03 1.00 6.06 -2.39 -0.01 0.99 16 37 H 0.08 1.81 7.35 -2.39 -0.02 1.79 16 38 H 0.10 1.93 7.41 -2.39 -0.02 1.91 16 39 H 0.06 1.39 7.51 -2.39 -0.02 1.37 16 40 H 0.09 1.56 7.39 -2.39 -0.02 1.54 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.76 7.06 -2.38 -0.02 1.74 16 45 H 0.08 3.11 8.10 -2.39 -0.02 3.09 16 46 H 0.06 2.43 6.22 -2.38 -0.01 2.41 16 47 H 0.04 2.03 7.16 -2.39 -0.02 2.02 16 48 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 49 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.08 3.29 8.10 -2.39 -0.02 3.27 16 51 H 0.03 1.29 3.96 -2.39 -0.01 1.28 16 52 H 0.07 2.42 7.35 -2.39 -0.02 2.41 16 Total: -1.00 -58.84 389.02 0.56 -58.29 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.89 Total: 29.15 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.33 Total: -5.45 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -7.64 Total: -97.72 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.41 kcal Total: -58.84 0.56 -58.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278192512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.025 kcal (2) G-P(sol) polarization free energy of solvation -58.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds