Wall clock time and date at job start Tue Mar 31 2020 12:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47428 * 2 1 4 4 N 1.46504 * 109.47059 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99972 * 270.00133 * 4 3 2 6 6 O 1.21620 * 119.99495 * 180.02562 * 5 4 3 7 7 C 1.43193 * 120.00148 * 0.02562 * 5 4 3 8 8 C 3.95169 * 109.91381 * 67.15770 * 2 1 3 9 9 C 4.95292 * 97.07478 * 72.93619 * 2 1 3 10 10 C 1.52999 * 109.47400 * 31.46373 * 9 8 7 11 11 C 1.52992 * 109.47051 * 151.46561 * 9 8 7 12 12 C 1.52999 * 109.47032 * 271.46739 * 9 8 7 13 13 C 1.46504 * 119.99787 * 90.00170 * 4 3 2 14 14 C 1.53081 * 109.43848 * 119.79444 * 13 4 3 15 15 C 1.53190 * 109.29209 * 181.23616 * 14 13 4 16 16 N 1.46921 * 108.89311 * 305.57883 * 15 14 13 17 17 C 1.36940 * 120.63187 * 233.51481 * 16 15 14 18 18 H 1.08001 * 120.00319 * 152.61971 * 17 16 15 19 19 C 1.38813 * 119.99903 * 332.62203 * 17 16 15 20 20 N 1.31624 * 120.00070 * 159.34992 * 19 17 16 21 21 Si 1.86800 * 120.00077 * 339.35529 * 19 17 16 22 22 H 1.48494 * 109.47321 * 92.87851 * 21 19 17 23 23 H 1.48501 * 109.47194 * 212.88430 * 21 19 17 24 24 H 1.48509 * 109.46983 * 332.87654 * 21 19 17 25 25 C 1.46923 * 118.74178 * 53.54201 * 16 15 14 26 26 C 1.53035 * 109.45960 * 239.99839 * 13 4 3 27 27 H 1.08995 * 109.47301 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46828 * 300.00132 * 1 2 3 29 29 H 1.09002 * 109.46687 * 59.99627 * 1 2 3 30 30 H 1.09012 * 109.46948 * 240.00182 * 2 1 3 31 31 H 1.09004 * 109.47139 * 120.00636 * 2 1 3 32 32 H 1.08999 * 109.47224 * 60.00110 * 3 2 1 33 33 H 1.09002 * 109.47491 * 299.99881 * 3 2 1 34 34 H 1.08999 * 109.47357 * 59.99856 * 10 9 8 35 35 H 1.08993 * 109.47480 * 180.02562 * 10 9 8 36 36 H 1.09008 * 109.47115 * 300.00319 * 10 9 8 37 37 H 1.08996 * 109.47431 * 59.99816 * 11 9 8 38 38 H 1.09000 * 109.47353 * 180.02562 * 11 9 8 39 39 H 1.09006 * 109.47359 * 299.99321 * 11 9 8 40 40 H 1.09000 * 109.47488 * 59.99987 * 12 9 8 41 41 H 1.09001 * 109.47250 * 180.02562 * 12 9 8 42 42 H 1.09008 * 109.46939 * 300.00006 * 12 9 8 43 43 H 1.08998 * 109.46073 * 359.97381 * 13 4 3 44 44 H 1.08992 * 109.38800 * 61.36034 * 14 13 4 45 45 H 1.09002 * 109.61927 * 301.25313 * 14 13 4 46 46 H 1.08999 * 109.58729 * 185.71870 * 15 14 13 47 47 H 1.09004 * 109.58886 * 65.43758 * 15 14 13 48 48 H 0.97001 * 119.99914 * 180.02562 * 20 19 17 49 49 H 1.09004 * 109.59094 * 66.17180 * 25 16 15 50 50 H 1.09001 * 109.59077 * 186.46452 * 25 16 15 51 51 H 1.09002 * 109.49848 * 58.67960 * 26 13 4 52 52 H 1.09002 * 109.52425 * 298.59433 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1785 1.4424 1.1681 6 8 5.3947 1.4428 1.1685 7 6 3.4620 1.4421 2.4079 8 6 2.8760 1.4423 3.4240 9 6 2.1400 1.4423 4.6988 10 6 1.2330 2.6727 4.7641 11 6 1.2883 0.1751 4.7960 12 6 3.1339 1.4792 5.8615 13 6 4.2381 1.4421 -1.2679 14 6 5.1141 2.6948 -1.3502 15 6 5.8554 2.7068 -2.6908 16 7 6.5894 1.4429 -2.8399 17 6 7.9312 1.4434 -3.1137 18 1 8.5467 0.6133 -2.7998 19 6 8.5002 2.5108 -3.7946 20 7 9.7956 2.7289 -3.7119 21 14 7.4274 3.6380 -4.8282 22 1 6.9907 4.7956 -4.0071 23 1 8.2031 4.1247 -5.9972 24 1 6.2356 2.8894 -5.3021 25 6 5.8565 0.1783 -2.6902 26 6 5.1178 0.1925 -1.3481 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9564 -0.8900 34 1 0.5249 2.6465 3.9359 35 1 0.6884 2.6729 5.7083 36 1 1.8398 3.5756 4.6949 37 1 1.9345 -0.7015 4.7495 38 1 0.7430 0.1752 5.7398 39 1 0.5802 0.1488 3.9677 40 1 3.7407 2.3821 5.7923 41 1 2.5890 1.4788 6.8055 42 1 3.7802 0.6026 5.8150 43 1 3.5300 1.4416 -2.0965 44 1 5.8372 2.6849 -0.5348 45 1 4.4890 3.5844 -1.2721 46 1 6.5562 3.5413 -2.7134 47 1 5.1374 2.8105 -3.5044 48 1 10.1931 3.4750 -4.1875 49 1 5.1369 0.0747 -3.5023 50 1 6.5579 -0.6557 -2.7147 51 1 4.4938 -0.6976 -1.2669 52 1 5.8426 0.2043 -0.5341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752433340.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:17 Heat of formation + Delta-G solvation = 5.467280 kcal Electronic energy + Delta-G solvation = -28175.214998 eV Core-core repulsion = 24561.628062 eV Total energy + Delta-G solvation = -3613.586936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.53516 -39.01046 -38.44268 -37.31275 -35.02049 -33.67881 -33.36107 -31.98780 -31.71255 -28.22058 -28.18322 -27.41054 -27.11655 -25.04788 -24.32452 -23.29875 -22.66674 -21.49469 -20.93190 -19.10250 -18.35474 -17.66925 -17.01801 -16.81407 -16.36936 -15.86888 -15.63688 -15.56982 -15.33871 -15.21994 -15.20738 -14.86811 -14.79051 -14.25930 -14.19006 -13.80220 -13.51748 -13.36254 -13.31716 -13.15503 -12.87789 -12.69677 -12.67797 -12.62172 -12.60176 -12.36354 -12.25990 -12.22964 -12.17801 -12.07663 -11.73651 -11.69974 -11.48297 -11.42876 -11.26249 -11.21078 -10.91885 -10.72346 -9.73766 -8.95544 -8.17033 -5.49431 0.50085 1.23677 1.30234 1.40148 1.51198 1.87584 2.42371 2.45354 2.90685 3.02059 3.35786 3.69342 3.89472 3.92209 3.95620 3.96316 3.97475 4.12466 4.19068 4.28000 4.32968 4.39578 4.46784 4.51138 4.61201 4.64882 4.72695 4.73770 4.74850 4.75065 4.83797 4.90255 4.92859 4.95867 4.96297 4.98574 5.05093 5.08010 5.19233 5.20028 5.22690 5.29505 5.33987 5.37428 5.40323 5.46490 5.63612 5.85160 6.10982 6.18098 6.29823 6.90540 7.01891 7.61261 8.00701 9.03433 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.003199 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.205970 B = 8751.182239 C = 9444.853099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.105 3.895 4 N -0.592 5.592 5 C 0.621 3.379 6 O -0.562 6.562 7 C -0.259 4.259 8 C -0.047 4.047 9 C 0.033 3.967 10 C -0.138 4.138 11 C -0.138 4.138 12 C -0.145 4.145 13 C 0.168 3.832 14 C -0.142 4.142 15 C 0.128 3.872 16 N -0.620 5.620 17 C -0.251 4.251 18 H 0.042 0.958 19 C -0.042 4.042 20 N -0.962 5.962 21 Si 0.956 3.044 22 H -0.277 1.277 23 H -0.309 1.309 24 H -0.249 1.249 25 C 0.151 3.849 26 C -0.139 4.139 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.118 0.882 44 H 0.047 0.953 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.262 0.738 49 H 0.053 0.947 50 H 0.051 0.949 51 H 0.082 0.918 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.909 -3.217 16.263 34.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C -0.016 4.016 4 N -0.321 5.321 5 C 0.410 3.590 6 O -0.442 6.442 7 C -0.262 4.262 8 C -0.049 4.049 9 C 0.033 3.967 10 C -0.195 4.195 11 C -0.195 4.195 12 C -0.202 4.202 13 C 0.066 3.934 14 C -0.182 4.182 15 C 0.002 3.998 16 N -0.344 5.344 17 C -0.381 4.381 18 H 0.059 0.941 19 C -0.236 4.236 20 N -0.608 5.608 21 Si 0.784 3.216 22 H -0.203 1.203 23 H -0.238 1.238 24 H -0.172 1.172 25 C 0.026 3.974 26 C -0.178 4.178 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.136 0.864 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.100 0.900 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -29.177 -3.153 16.170 33.507 hybrid contribution 1.086 0.546 -0.593 1.352 sum -28.091 -2.607 15.577 32.226 Atomic orbital electron populations 1.21651 0.93014 1.02585 1.02747 1.21906 0.97745 0.95867 1.02042 1.21992 0.76622 0.98407 1.04625 1.48087 1.08076 1.71569 1.04416 1.15185 0.85314 0.76400 0.82059 1.90879 1.14971 1.50891 1.87483 1.20607 1.01299 1.07965 0.96301 1.23297 0.95683 0.91596 0.94358 1.18276 0.94240 0.99388 0.84820 1.21914 0.98641 0.94647 1.04340 1.21904 0.99119 0.94165 1.04277 1.21960 0.98653 1.02042 0.97508 1.20987 0.93381 0.94428 0.84644 1.22326 0.99157 0.98100 0.98643 1.21357 0.94519 0.88443 0.95449 1.44454 1.05456 1.01743 1.82775 1.18836 0.83602 1.06116 1.29522 0.94052 1.26015 0.96622 1.00513 1.00445 1.70010 1.12923 1.32135 1.45755 0.85762 0.78959 0.78840 0.78074 1.20343 1.23806 1.17228 1.21036 0.94382 0.87286 0.94720 1.22286 0.99019 0.97548 0.98986 0.91968 0.91889 0.91515 0.91657 0.93290 0.89837 0.87775 0.91433 0.88617 0.92927 0.92930 0.88640 0.91443 0.92996 0.88379 0.92973 0.86400 0.93400 0.90440 0.93638 0.93160 0.92966 0.92872 0.93042 0.89996 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.14 -2.13 6.26 30.59 0.19 -1.94 16 3 C 0.10 1.88 5.19 86.38 0.45 2.33 16 4 N -0.59 -16.45 2.42 -806.50 -1.95 -18.40 16 5 C 0.62 21.50 6.95 85.49 0.59 22.09 16 6 O -0.56 -25.53 13.33 -4.09 -0.05 -25.59 16 7 C -0.26 -7.40 11.69 30.02 0.35 -7.04 16 8 C -0.05 -1.03 11.76 31.14 0.37 -0.67 16 9 C 0.03 0.43 0.95 -53.99 -0.05 0.38 16 10 C -0.14 -1.28 8.43 71.98 0.61 -0.67 16 11 C -0.14 -1.26 8.43 71.98 0.61 -0.66 16 12 C -0.14 -1.83 8.43 71.98 0.61 -1.22 16 13 C 0.17 5.29 2.50 45.03 0.11 5.41 16 14 C -0.14 -5.52 5.29 30.68 0.16 -5.36 16 15 C 0.13 5.71 4.20 86.36 0.36 6.08 16 16 N -0.62 -31.29 2.77 -699.09 -1.94 -33.23 16 17 C -0.25 -15.39 10.03 84.03 0.84 -14.54 16 18 H 0.04 2.81 8.06 -2.91 -0.02 2.78 16 19 C -0.04 -2.60 5.23 84.86 0.44 -2.15 16 20 N -0.96 -64.11 13.97 21.65 0.30 -63.81 16 21 Si 0.96 48.20 24.34 68.60 1.67 49.87 16 22 H -0.28 -13.28 6.62 99.48 0.66 -12.62 16 23 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 24 H -0.25 -11.52 6.64 99.48 0.66 -10.86 16 25 C 0.15 6.16 6.52 86.37 0.56 6.73 16 26 C -0.14 -5.01 5.27 30.67 0.16 -4.85 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 1.39 6.89 -2.39 -0.02 1.37 16 33 H 0.10 1.44 7.92 -2.39 -0.02 1.42 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.12 2.95 7.79 -2.39 -0.02 2.93 16 44 H 0.05 2.28 6.21 -2.39 -0.01 2.26 16 45 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.05 2.29 4.50 -2.39 -0.01 2.28 16 47 H 0.05 2.00 7.07 -2.38 -0.02 1.99 16 48 H 0.26 16.44 8.31 -92.71 -0.77 15.66 16 49 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 51 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 52 H 0.05 2.06 6.21 -2.39 -0.01 2.05 16 Total: -1.00 -81.78 403.52 5.88 -75.90 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.77 Total: 12.09 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 7.08 Total: 3.17 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -3.59 Total: -115.44 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.67 Total: 49.87 kcal Total: -81.78 5.88 -75.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752433340.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.368 kcal (2) G-P(sol) polarization free energy of solvation -81.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds