Wall clock time and date at job start Tue Mar 31 2020 12:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.47323 * 300.00005 * 9 7 6 11 11 C 1.53000 * 109.46851 * 300.00082 * 10 9 7 12 12 C 1.53000 * 109.47464 * 299.99506 * 11 10 9 13 13 C 1.52996 * 109.46964 * 300.00550 * 12 11 10 14 14 C 1.52995 * 109.47503 * 59.99811 * 13 12 11 15 15 C 1.52995 * 109.47087 * 180.02562 * 10 9 7 16 16 C 1.53003 * 109.47127 * 59.99558 * 14 13 12 17 17 C 1.52995 * 109.47087 * 300.00241 * 16 14 13 18 18 C 1.53000 * 109.47310 * 60.00238 * 17 16 14 19 19 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 3 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 29 29 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 30 30 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 32 32 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 33 33 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 34 34 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 35 35 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 36 36 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 37 37 H 1.08999 * 109.46690 * 59.99597 * 10 9 7 38 38 H 1.08999 * 109.46964 * 60.00313 * 11 10 9 39 39 H 1.09002 * 109.46644 * 179.97438 * 11 10 9 40 40 H 1.08992 * 109.47140 * 180.02562 * 12 11 10 41 41 H 1.08997 * 109.47345 * 299.99253 * 13 12 11 42 42 H 1.09004 * 109.46693 * 179.97438 * 13 12 11 43 43 H 1.09004 * 109.47642 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.47253 * 299.99967 * 15 10 9 45 45 H 1.09002 * 109.47093 * 180.02562 * 15 10 9 46 46 H 1.09005 * 109.47047 * 180.02562 * 16 14 13 47 47 H 1.09004 * 109.47226 * 60.00213 * 16 14 13 48 48 H 1.09008 * 109.46751 * 180.02562 * 17 16 14 49 49 H 1.08995 * 109.47107 * 59.99693 * 18 17 16 50 50 H 1.09000 * 109.47201 * 179.97438 * 18 17 16 51 51 H 0.97004 * 119.99747 * 95.00774 * 19 3 2 52 52 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 5.2932 5.3362 -1.0736 11 6 5.6927 4.7661 -2.4361 12 6 7.2174 4.7680 -2.5626 13 6 7.7377 6.2013 -2.4370 14 6 7.3384 6.7714 -1.0745 15 6 5.8141 6.7693 -0.9483 16 6 7.9433 5.9100 0.0359 17 6 7.4229 4.4767 -0.0897 18 6 7.8224 3.9067 -1.4522 19 7 1.6524 2.0974 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5384 22 6 0.0486 3.2945 2.5548 23 7 0.8874 3.3249 3.5687 24 14 -1.6388 4.0796 2.7147 25 1 -1.7858 4.6654 4.0714 26 1 -1.7857 5.1494 1.6951 27 1 -2.6865 3.0484 2.5046 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5483 0.1315 36 1 5.6136 4.8809 1.0075 37 1 4.2070 5.3347 -0.9835 38 1 5.3219 3.7450 -2.5255 39 1 5.2613 5.3795 -3.2271 40 1 7.5020 4.3624 -3.5334 41 1 7.3068 6.8150 -3.2281 42 1 8.8241 6.2026 -2.5267 43 1 7.7094 7.7924 -0.9848 44 1 5.5299 7.1757 0.0224 45 1 5.3828 7.3830 -1.7392 46 1 7.6583 6.3159 1.0066 47 1 9.0296 5.9113 -0.0542 48 1 7.8535 3.8632 0.7017 49 1 8.9086 3.9080 -1.5423 50 1 7.4520 2.8854 -1.5415 51 1 2.2720 2.1231 1.9978 52 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753477374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:51 Heat of formation + Delta-G solvation = -66.246099 kcal Electronic energy + Delta-G solvation = -29201.151692 eV Core-core repulsion = 25584.455031 eV Total energy + Delta-G solvation = -3616.696661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.79137 -38.84470 -36.79054 -33.97003 -32.92955 -32.66782 -32.49686 -32.32500 -29.62162 -28.00825 -26.26813 -25.86522 -23.59612 -22.74335 -21.81706 -21.46186 -21.37444 -20.26516 -19.68534 -17.90906 -17.44158 -16.34876 -15.65799 -15.41304 -15.18899 -14.82785 -14.53066 -14.39169 -13.93162 -13.72179 -13.61995 -13.40727 -13.34115 -13.25351 -13.10523 -12.82552 -12.61410 -12.47776 -12.37106 -12.00076 -11.62595 -11.31639 -11.02193 -10.96425 -10.91574 -10.89610 -10.82548 -10.72694 -10.55208 -10.36134 -10.13497 -10.04597 -9.89800 -9.70520 -9.68372 -9.23121 -9.15569 -8.95364 -8.60839 -7.11670 -6.14053 -3.15509 2.95875 3.47730 3.49767 3.56488 3.67847 4.40717 4.46496 4.50971 4.61514 4.96483 5.02815 5.06667 5.12870 5.19087 5.24747 5.28611 5.32532 5.34760 5.36143 5.37712 5.50083 5.53617 5.64341 5.68360 5.72344 5.82431 5.84065 5.89604 5.89793 5.95160 5.96297 5.98486 6.01182 6.02059 6.05218 6.10123 6.23839 6.31443 6.38120 6.44708 6.46215 6.48518 6.51164 6.54192 6.62677 6.89011 6.96458 7.19751 7.76238 7.93756 8.59341 8.69747 9.14910 10.01776 10.17036 11.32939 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.003724 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.423025 B = 7516.516727 C = 8469.791243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.714 5.714 7 C 0.518 3.482 8 O -0.551 6.551 9 C -0.097 4.097 10 C -0.076 4.076 11 C -0.108 4.108 12 C -0.085 4.085 13 C -0.107 4.107 14 C -0.086 4.086 15 C -0.106 4.106 16 C -0.109 4.109 17 C -0.061 4.061 18 C -0.119 4.119 19 N -0.732 5.732 20 C -0.328 4.328 21 H 0.067 0.933 22 C -0.042 4.042 23 N -0.942 5.942 24 Si 1.075 2.925 25 H -0.286 1.286 26 H -0.296 1.296 27 H -0.296 1.296 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.408 0.592 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.054 0.946 50 H 0.092 0.908 51 H 0.367 0.633 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.284 5.097 -11.715 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.072 0.928 5 C -0.011 4.011 6 N -0.365 5.365 7 C 0.305 3.695 8 O -0.430 6.430 9 C -0.119 4.119 10 C -0.095 4.095 11 C -0.146 4.146 12 C -0.104 4.104 13 C -0.144 4.144 14 C -0.105 4.105 15 C -0.144 4.144 16 C -0.147 4.147 17 C -0.080 4.080 18 C -0.156 4.156 19 N -0.375 5.375 20 C -0.458 4.458 21 H 0.085 0.915 22 C -0.240 4.240 23 N -0.587 5.587 24 Si 0.906 3.094 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.223 1.223 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.245 0.755 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.073 0.927 50 H 0.110 0.890 51 H 0.201 0.799 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.630 5.288 -10.973 16.841 hybrid contribution 0.737 -0.625 -0.705 1.196 sum 12.366 4.663 -11.678 17.637 Atomic orbital electron populations 1.21760 0.95593 0.99588 1.03335 1.22058 0.97099 0.98341 0.99907 1.20489 0.89927 0.92665 0.91019 0.92844 1.21650 0.95505 0.82978 1.00939 1.46035 1.07324 1.10471 1.72657 1.20516 0.82256 0.90915 0.75838 1.90577 1.55834 1.46674 1.49886 1.21326 0.96996 0.92813 1.00732 1.21011 0.99723 0.94616 0.94130 1.21546 0.95688 1.00938 0.96418 1.21045 0.95175 0.95431 0.98731 1.21543 1.00173 0.96040 0.96665 1.21045 0.95555 0.98675 0.95182 1.21521 0.95135 0.95702 1.02028 1.21579 0.99841 0.94904 0.98330 1.20761 0.92735 0.95921 0.98601 1.21776 0.99555 1.01122 0.93178 1.42452 1.16778 1.67034 1.11283 1.19991 0.92616 1.32277 1.00954 0.91509 1.25683 1.05647 1.00436 0.92284 1.70888 1.08431 1.47424 1.31926 0.83304 0.74402 0.75889 0.75791 1.21141 1.22324 1.22302 0.89622 0.94118 0.94896 0.93834 0.92745 0.92131 0.91981 0.75529 0.88717 0.90567 0.92002 0.91934 0.91674 0.92305 0.92259 0.91421 0.91624 0.91696 0.91944 0.91871 0.90839 0.92726 0.88975 0.79900 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.15 0.34 -2.30 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 3 C 0.17 3.13 2.59 -67.93 -0.18 2.96 16 4 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 5 C 0.11 1.93 5.23 -4.04 -0.02 1.91 16 6 N -0.71 -11.65 5.28 -60.29 -0.32 -11.96 16 7 C 0.52 8.29 5.64 -10.99 -0.06 8.23 16 8 O -0.55 -10.15 13.66 5.55 0.08 -10.08 16 9 C -0.10 -1.29 2.28 -91.77 -0.21 -1.50 16 10 C -0.08 -0.89 2.63 -90.62 -0.24 -1.13 16 11 C -0.11 -1.26 4.97 -26.73 -0.13 -1.39 16 12 C -0.09 -0.93 3.20 -90.62 -0.29 -1.22 16 13 C -0.11 -1.00 5.19 -26.74 -0.14 -1.14 16 14 C -0.09 -0.82 3.19 -90.65 -0.29 -1.11 16 15 C -0.11 -1.08 5.19 -26.76 -0.14 -1.22 16 16 C -0.11 -1.11 5.19 -26.73 -0.14 -1.25 16 17 C -0.06 -0.76 2.36 -90.62 -0.21 -0.97 16 18 C -0.12 -1.47 4.90 -26.73 -0.13 -1.60 16 19 N -0.73 -16.48 4.50 -53.43 -0.24 -16.72 16 20 C -0.33 -8.32 7.75 -15.06 -0.12 -8.44 16 21 H 0.07 1.69 7.32 -52.48 -0.38 1.30 16 22 C -0.04 -1.15 5.50 -17.43 -0.10 -1.25 16 23 N -0.94 -27.63 13.70 55.49 0.76 -26.87 16 24 Si 1.07 24.74 29.92 -169.99 -5.09 19.66 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.30 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.08 1.84 5.99 -51.93 -0.31 1.53 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.41 6.86 7.55 -40.82 -0.31 6.55 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 0.94 7.56 -51.93 -0.39 0.55 16 38 H 0.06 0.82 7.22 -51.93 -0.37 0.45 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.99 8.10 -51.92 -0.42 0.57 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 1.38 5.51 -51.93 -0.29 1.10 16 51 H 0.37 8.86 6.63 -40.82 -0.27 8.59 16 52 H 0.26 7.42 6.77 -40.82 -0.28 7.15 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -28.60 378.15 -10.74 -39.34 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -9.43 Total: 14.83 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -2.20 Total: -13.89 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.20 Total: -55.56 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.60 -10.74 -39.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753477374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.909 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds