Wall clock time and date at job start Tue Mar 31 2020 12:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.47702 * 2 1 4 4 C 1.46500 * 120.00270 * 270.00104 * 3 2 1 5 5 C 1.50698 * 109.47354 * 270.00022 * 4 3 2 6 6 H 1.08002 * 119.99355 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00130 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00418 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47250 * 89.99925 * 9 7 5 11 11 H 1.48501 * 109.47350 * 209.99708 * 9 7 5 12 12 H 1.48507 * 109.47292 * 329.99863 * 9 7 5 13 13 C 1.34780 * 120.00092 * 90.00130 * 3 2 1 14 14 O 1.21276 * 120.00348 * 180.02562 * 13 3 2 15 15 C 1.50710 * 119.99792 * 0.27328 * 13 3 2 16 16 N 1.46894 * 109.46826 * 176.99077 * 15 13 3 17 17 C 1.50978 * 110.99800 * 176.77445 * 16 15 13 18 18 C 1.47382 * 100.88034 * 214.38373 * 17 16 15 19 19 H 1.09004 * 102.46665 * 300.75882 * 18 17 16 20 20 C 1.47975 * 141.09891 * 172.87757 * 18 17 16 21 21 H 1.09008 * 115.47822 * 54.22789 * 20 18 17 22 22 C 1.55171 * 112.74027 * 277.95420 * 20 18 17 23 23 C 1.55193 * 106.70379 * 288.37457 * 22 20 18 24 24 C 1.57742 * 102.18414 * 10.82758 * 23 22 20 25 25 H 1.08997 * 118.58727 * 189.65596 * 24 23 22 26 26 C 1.57312 * 96.64666 * 315.52937 * 24 23 22 27 27 C 1.54035 * 98.74312 * 62.35881 * 24 23 22 28 28 C 1.53001 * 111.54604 * 25.91308 * 27 24 23 29 29 C 1.50004 * 111.00362 * 56.96369 * 16 15 13 30 30 H 1.08994 * 109.47877 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46845 * 299.99988 * 1 2 3 32 32 H 1.09005 * 109.46996 * 59.99351 * 1 2 3 33 33 H 1.09003 * 109.46867 * 239.99457 * 2 1 3 34 34 H 1.09005 * 109.46996 * 120.00649 * 2 1 3 35 35 H 1.09000 * 109.47072 * 30.00189 * 4 3 2 36 36 H 1.09001 * 109.47470 * 149.99798 * 4 3 2 37 37 H 0.96988 * 120.00377 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47030 * 296.99220 * 15 13 3 39 39 H 1.09003 * 109.46491 * 56.99116 * 15 13 3 40 40 H 1.09004 * 111.13024 * 332.28172 * 17 16 15 41 41 H 1.08998 * 111.14178 * 96.43241 * 17 16 15 42 42 H 1.09002 * 110.00540 * 47.67663 * 22 20 18 43 43 H 1.08997 * 110.01486 * 169.05839 * 22 20 18 44 44 H 1.09000 * 110.85559 * 252.66096 * 23 22 20 45 45 H 1.08994 * 110.86521 * 129.00740 * 23 22 20 46 46 H 1.09004 * 112.09658 * 177.31197 * 26 24 23 47 47 H 1.08997 * 112.10819 * 303.95661 * 26 24 23 48 48 H 1.08994 * 109.47270 * 308.66898 * 28 27 24 49 49 H 1.09002 * 109.47013 * 68.66909 * 28 27 24 50 50 H 1.08995 * 109.47180 * 188.66504 * 28 27 24 51 51 H 1.09003 * 110.49850 * 229.66776 * 29 16 15 52 52 H 1.09005 * 110.49793 * 352.34194 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2306 -1.0958 7 6 4.1492 2.3894 -2.8779 8 7 3.3490 3.1248 -3.6186 9 14 5.9136 2.0964 -3.4168 10 1 5.9776 0.8750 -4.2591 11 1 6.3923 3.2635 -4.2004 12 1 6.7738 1.9175 -2.2195 13 6 2.2432 2.0164 1.1672 14 8 2.6471 3.1599 1.1673 15 6 1.9978 1.3039 2.4724 16 7 2.3830 2.1788 3.5877 17 6 2.0778 1.5285 4.9157 18 6 1.7048 2.7044 5.7221 19 1 2.6039 3.3187 5.6722 20 6 1.1585 3.0643 7.0493 21 1 1.6947 2.6526 7.9045 22 6 -0.3887 2.9618 7.1090 23 6 -0.9466 4.1421 6.2698 24 6 0.3489 4.6781 5.5467 25 1 0.2900 5.6202 5.0017 26 6 1.2908 4.6360 6.8060 27 6 0.6987 3.4199 4.7300 28 6 -0.5415 2.5685 4.4506 29 6 1.6374 3.4792 3.5333 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 1.5818 1.6877 -2.0283 36 1 2.0958 3.1410 -1.1384 37 1 3.6751 3.5153 -4.4443 38 1 0.9405 1.0527 2.5560 39 1 2.5920 0.3906 2.5049 40 1 1.2447 0.8309 4.8294 41 1 2.9599 1.0350 5.3237 42 1 -0.7163 2.0136 6.6828 43 1 -0.7286 3.0447 8.1413 44 1 -1.3759 4.9084 6.9152 45 1 -1.6789 3.7899 5.5434 46 1 2.3125 4.9289 6.5638 47 1 0.8904 5.2162 7.6373 48 1 -1.0724 2.3826 5.3841 49 1 -1.1970 3.0976 3.7588 50 1 -0.2385 1.6189 4.0096 51 1 2.3262 4.3185 3.6297 52 1 1.0694 3.5550 2.6060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452045564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:44 Heat of formation + Delta-G solvation = 55.086186 kcal Electronic energy + Delta-G solvation = -29167.423089 eV Core-core repulsion = 25555.987790 eV Total energy + Delta-G solvation = -3611.435299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43730 -39.16389 -36.84345 -35.15612 -32.80213 -31.90299 -31.16926 -30.05895 -29.46907 -27.84429 -27.04175 -26.31460 -24.37991 -22.99441 -22.49554 -21.31563 -21.15788 -19.63114 -18.37054 -17.89427 -16.75860 -16.39680 -16.28852 -15.91988 -15.51043 -15.17354 -14.69075 -14.49944 -14.16180 -13.89760 -13.37338 -13.33455 -12.93338 -12.64496 -12.46990 -12.37233 -12.12799 -12.01170 -11.93208 -11.64239 -11.55419 -11.49900 -11.45764 -11.38434 -11.20001 -11.13465 -10.87475 -10.72873 -10.70806 -10.51400 -10.42026 -10.31150 -10.09021 -9.83928 -9.62349 -9.53892 -8.74006 -8.39866 -8.10617 -7.59498 -6.00557 -4.04825 3.32776 3.39330 3.42728 3.50018 3.69011 3.91345 4.17706 4.19885 4.48474 4.49727 4.65032 4.69716 4.97667 5.03796 5.09174 5.14960 5.25767 5.28983 5.31157 5.34416 5.37423 5.42345 5.44889 5.52785 5.62700 5.64035 5.67377 5.68853 5.70641 5.73605 5.79990 5.87756 5.89811 5.94601 6.00328 6.05691 6.11521 6.13913 6.24258 6.26556 6.33844 6.40952 6.48122 6.49342 6.93648 7.01481 7.20884 7.48525 7.61196 7.96624 8.28273 8.48745 8.95523 9.18142 9.60352 11.07503 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003198 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.444903 B = 8752.348933 C = 9177.716993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.249 3.751 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.525 6.525 15 C 0.029 3.971 16 N -0.507 5.507 17 C 0.069 3.931 18 C -0.131 4.131 19 H 0.069 0.931 20 C -0.064 4.064 21 H 0.095 0.905 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.084 4.084 25 H 0.101 0.899 26 C -0.125 4.125 27 C -0.105 4.105 28 C -0.166 4.166 29 C 0.073 3.927 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.054 0.946 50 H 0.048 0.952 51 H 0.080 0.920 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.312 -4.021 21.402 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.102 4.102 16 N -0.231 5.231 17 C -0.058 4.058 18 C -0.150 4.150 19 H 0.087 0.913 20 C -0.082 4.082 21 H 0.113 0.887 22 C -0.160 4.160 23 C -0.172 4.172 24 C -0.103 4.103 25 H 0.119 0.881 26 C -0.163 4.163 27 C -0.106 4.106 28 C -0.222 4.222 29 C -0.054 4.054 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.098 0.902 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.521 -3.195 21.107 23.374 hybrid contribution 0.206 -0.394 -0.572 0.724 sum -9.315 -3.589 20.535 22.833 Atomic orbital electron populations 1.22218 0.96960 1.01315 1.02165 1.21394 0.93351 0.84423 1.02605 1.48249 1.64102 1.13180 1.07704 1.19226 0.96181 0.93549 0.78108 1.21449 0.96964 1.31725 1.06100 0.92479 1.24930 0.97819 0.94954 0.96433 1.69930 1.35675 1.33608 1.14328 0.86507 0.84800 0.77606 0.78577 1.20702 1.21126 1.19852 1.20121 0.78781 0.87118 0.84805 1.90670 1.44748 1.17915 1.86838 1.22262 0.99718 0.97156 0.91101 1.65383 1.54676 1.03087 0.99971 1.21638 0.99685 0.95097 0.89349 1.21236 0.99950 0.98906 0.94925 0.91256 1.21940 0.95107 0.95694 0.95502 0.88713 1.22693 0.94872 0.98822 0.99569 1.23603 0.97648 0.97341 0.98652 1.23420 0.95602 0.96739 0.94499 0.88052 1.24465 0.99586 0.95271 0.96954 1.22916 0.95227 0.96208 0.96263 1.22663 0.97460 0.98946 1.03140 1.22596 0.94214 0.92275 0.96330 0.92216 0.93329 0.92053 0.89967 0.91877 0.95188 0.94025 0.92791 0.92650 0.88692 0.93241 0.90155 0.90800 0.92088 0.92393 0.90086 0.91323 0.91186 0.88818 0.92691 0.93311 0.90170 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.73 5.96 -4.05 -0.02 1.70 16 3 N -0.60 -12.81 2.46 -175.06 -0.43 -13.24 16 4 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 5 C -0.52 -15.11 9.38 -34.44 -0.32 -15.43 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 9 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 10.73 7.05 -10.98 -0.08 10.65 16 14 O -0.53 -13.38 13.83 5.56 0.08 -13.31 16 15 C 0.03 0.46 3.92 -4.97 -0.02 0.45 16 16 N -0.51 -7.90 5.15 -233.48 -1.20 -9.11 16 17 C 0.07 0.81 6.05 -4.23 -0.03 0.79 16 18 C -0.13 -1.43 2.87 -92.79 -0.27 -1.69 16 19 H 0.07 0.88 5.87 -51.93 -0.30 0.58 16 20 C -0.06 -0.55 5.09 -88.21 -0.45 -1.00 16 21 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 22 C -0.12 -0.96 5.63 -24.42 -0.14 -1.10 16 23 C -0.14 -1.13 5.71 -22.98 -0.13 -1.27 16 24 C -0.08 -0.85 5.41 -85.14 -0.46 -1.31 16 25 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 26 C -0.13 -1.15 6.28 -20.69 -0.13 -1.28 16 27 C -0.10 -1.22 1.10 -151.41 -0.17 -1.39 16 28 C -0.17 -1.76 6.74 37.16 0.25 -1.51 16 29 C 0.07 1.14 4.33 -2.49 -0.01 1.13 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.63 7.32 -51.93 -0.38 0.25 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.06 0.86 6.36 -51.93 -0.33 0.53 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.06 0.77 5.65 -51.93 -0.29 0.48 16 39 H 0.10 1.38 7.25 -51.93 -0.38 1.00 16 40 H 0.05 0.53 6.24 -51.93 -0.32 0.21 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.58 5.92 -51.93 -0.31 0.27 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.68 5.37 -51.93 -0.28 0.41 16 46 H 0.07 0.68 7.29 -51.93 -0.38 0.30 16 47 H 0.07 0.56 8.04 -51.93 -0.42 0.15 16 48 H 0.09 0.83 2.84 -51.93 -0.15 0.68 16 49 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 50 H 0.05 0.54 4.66 -51.93 -0.24 0.30 16 51 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 52 H 0.07 1.26 6.14 -51.93 -0.32 0.94 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -32.76 373.62 -10.59 -43.35 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.66 Total: 0.61 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.72 Total: -4.93 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.90 Total: -48.61 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.76 -10.59 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452045564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.431 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds