Wall clock time and date at job start Tue Mar 31 2020 12:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47408 * 2 1 4 4 C 1.50700 * 109.47438 * 239.99401 * 2 1 3 5 5 O 1.21281 * 120.00230 * 276.15741 * 4 2 1 6 6 N 1.34779 * 119.99550 * 96.16093 * 4 2 1 7 7 C 1.46493 * 120.00377 * 4.50639 * 6 4 2 8 8 C 1.46498 * 119.99458 * 184.51135 * 6 4 2 9 9 C 1.50697 * 109.47633 * 89.99828 * 8 6 4 10 10 H 1.08010 * 119.99647 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00482 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99977 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99737 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46732 * 90.00239 * 13 11 9 15 15 H 1.48494 * 109.47218 * 210.00162 * 13 11 9 16 16 H 1.48496 * 109.47375 * 330.00586 * 13 11 9 17 17 N 1.46903 * 109.46747 * 119.99303 * 2 1 3 18 18 C 1.48507 * 110.99860 * 50.50264 * 17 2 1 19 19 C 1.54262 * 104.74800 * 159.32359 * 18 17 2 20 20 H 1.08999 * 112.71846 * 99.15367 * 19 18 17 21 21 C 1.56028 * 108.58692 * 224.80040 * 19 18 17 22 22 H 1.08998 * 115.98443 * 311.48428 * 21 19 18 23 23 C 1.55914 * 104.50497 * 181.81957 * 21 19 18 24 24 C 1.54724 * 104.63094 * 289.62499 * 23 21 19 25 25 C 1.55918 * 104.64077 * 359.97438 * 24 23 21 26 26 H 1.08997 * 116.46537 * 199.78195 * 25 24 23 27 27 C 1.56911 * 100.69173 * 326.31595 * 25 24 23 28 28 C 1.55525 * 104.81496 * 336.03632 * 19 18 17 29 29 C 1.52999 * 112.85865 * 122.97744 * 28 19 18 30 30 C 1.49191 * 110.72636 * 165.31805 * 17 2 1 31 31 H 1.09002 * 109.46701 * 174.37420 * 1 2 3 32 32 H 1.08996 * 109.47481 * 294.38227 * 1 2 3 33 33 H 1.09002 * 109.46661 * 54.37824 * 1 2 3 34 34 H 1.09001 * 109.47385 * 92.84217 * 7 6 4 35 35 H 1.09003 * 109.47265 * 212.84298 * 7 6 4 36 36 H 1.09000 * 109.47009 * 332.84232 * 7 6 4 37 37 H 1.09006 * 109.47183 * 209.99583 * 8 6 4 38 38 H 1.08999 * 109.47642 * 329.99165 * 8 6 4 39 39 H 0.97004 * 119.99835 * 179.97438 * 12 11 9 40 40 H 1.09008 * 110.37930 * 40.51158 * 18 17 2 41 41 H 1.08996 * 110.47711 * 278.19275 * 18 17 2 42 42 H 1.09004 * 110.40224 * 48.45533 * 23 21 19 43 43 H 1.09001 * 110.40676 * 170.76418 * 23 21 19 44 44 H 1.08999 * 110.36257 * 241.20217 * 24 23 21 45 45 H 1.09000 * 110.43825 * 118.78723 * 24 23 21 46 46 H 1.09006 * 112.01885 * 170.23986 * 27 25 24 47 47 H 1.08990 * 112.02909 * 296.68608 * 27 25 24 48 48 H 1.09005 * 109.47364 * 170.42269 * 29 28 19 49 49 H 1.09000 * 109.47379 * 290.42052 * 29 28 19 50 50 H 1.08997 * 109.46886 * 50.42762 * 29 28 19 51 51 H 1.09001 * 109.74428 * 81.78318 * 30 17 2 52 52 H 1.09009 * 111.33911 * 319.21200 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.1284 -1.9195 -1.2358 6 7 2.3752 -0.0023 -2.3247 7 6 2.3537 1.4619 -2.2860 8 6 2.7691 -0.6970 -3.5529 9 6 1.5500 -0.9437 -4.4037 10 1 0.5786 -0.6161 -4.0633 11 6 1.6744 -1.5875 -5.6165 12 7 0.6105 -1.8023 -6.3592 13 14 3.3544 -2.1534 -6.2055 14 1 3.6067 -3.5363 -5.7268 15 1 3.3928 -2.1285 -7.6897 16 1 4.3991 -1.2453 -5.6680 17 7 2.0196 -0.6924 1.1996 18 6 1.3655 -2.0167 1.3538 19 6 2.3100 -2.8162 2.2750 20 1 1.9778 -2.8248 3.3131 21 6 2.4832 -4.2504 1.6854 22 1 1.5645 -4.7656 1.4048 23 6 3.4071 -4.9830 2.7055 24 6 4.7926 -4.3185 2.5252 25 6 4.5745 -3.2479 1.4128 26 1 5.4672 -2.8951 0.8965 27 6 3.4995 -3.9665 0.5240 28 6 3.7029 -2.1491 2.0919 29 6 4.3007 -1.6502 3.4089 30 6 3.4682 -1.0226 1.0643 31 1 -0.3633 -1.0228 -0.1007 32 1 -0.3634 0.4242 0.9359 33 1 -0.3633 0.5986 -0.8354 34 1 3.3421 1.8328 -2.0146 35 1 2.0780 1.8473 -3.2677 36 1 1.6250 1.7952 -1.5471 37 1 3.4797 -0.0826 -4.1058 38 1 3.2335 -1.6497 -3.2985 39 1 0.6981 -2.2549 -7.2127 40 1 1.2726 -2.5093 0.3858 41 1 0.3858 -1.9063 1.8184 42 1 3.0432 -4.8348 3.7223 43 1 3.4614 -6.0466 2.4733 44 1 5.5281 -5.0560 2.2039 45 1 5.1104 -3.8431 3.4532 46 1 3.0818 -3.3003 -0.2309 47 1 3.8828 -4.8863 0.0823 48 1 5.3363 -1.3508 3.2476 49 1 3.7271 -0.7955 3.7676 50 1 4.2646 -2.4488 4.1498 51 1 4.0700 -0.1490 1.3146 52 1 3.7034 -1.3712 0.0586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452049144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:43 Heat of formation + Delta-G solvation = -28.933284 kcal Electronic energy + Delta-G solvation = -30101.893427 eV Core-core repulsion = 26486.814771 eV Total energy + Delta-G solvation = -3615.078656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.62686 -40.80722 -37.66683 -36.47981 -34.79335 -33.88139 -32.35879 -30.58777 -30.12278 -29.45060 -27.73446 -27.35208 -25.97152 -25.52740 -23.80327 -22.17405 -21.52372 -20.68552 -19.79036 -19.18015 -18.96537 -18.22110 -17.30007 -17.16350 -16.44410 -16.29831 -16.14227 -15.68137 -15.21155 -15.05092 -14.92144 -14.54156 -14.34847 -13.88809 -13.79035 -13.69441 -13.46815 -13.33883 -13.24581 -13.08415 -12.91483 -12.79372 -12.60104 -12.49481 -12.39607 -12.18029 -12.09925 -12.00526 -11.91285 -11.78085 -11.73244 -11.48568 -11.35345 -11.19723 -11.12696 -10.91231 -10.86070 -10.67806 -9.42189 -9.15577 -8.37489 -6.42006 1.28188 1.31531 1.39970 1.71692 2.26470 2.33820 2.96904 2.98830 3.48814 3.52351 3.59686 3.76233 3.86923 4.04732 4.11926 4.18342 4.30716 4.32254 4.36045 4.37243 4.48816 4.52425 4.61178 4.62851 4.67465 4.70245 4.74237 4.75053 4.80941 4.82589 4.91671 4.93246 4.94761 5.01097 5.06032 5.08734 5.13402 5.16009 5.19096 5.22026 5.29955 5.37009 5.40802 5.43202 5.53781 5.56942 5.61996 5.71233 5.82126 5.94298 6.21949 6.59316 6.68688 7.19450 7.45238 8.79354 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.004546 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.674244 B = 6158.250139 C = 6994.991992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.053 3.947 3 H 0.125 0.875 4 C 0.479 3.521 5 O -0.568 6.568 6 N -0.606 5.606 7 C 0.073 3.927 8 C 0.226 3.774 9 C -0.532 4.532 10 H 0.030 0.970 11 C 0.014 3.986 12 N -0.944 5.944 13 Si 0.944 3.056 14 H -0.278 1.278 15 H -0.274 1.274 16 H -0.241 1.241 17 N -0.470 5.470 18 C 0.012 3.988 19 C -0.071 4.071 20 H 0.096 0.904 21 C -0.099 4.099 22 H 0.084 0.916 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.095 4.095 26 H 0.085 0.915 27 C -0.156 4.156 28 C -0.049 4.049 29 C -0.121 4.121 30 C 0.025 3.975 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.017 0.983 39 H 0.268 0.732 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.127 2.883 21.860 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.059 4.059 3 H 0.142 0.858 4 C 0.267 3.733 5 O -0.449 6.449 6 N -0.337 5.337 7 C -0.069 4.069 8 C 0.103 3.897 9 C -0.570 4.570 10 H 0.048 0.952 11 C -0.184 4.184 12 N -0.584 5.584 13 Si 0.768 3.232 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.164 1.164 17 N -0.192 5.192 18 C -0.116 4.116 19 C -0.090 4.090 20 H 0.115 0.885 21 C -0.117 4.117 22 H 0.102 0.898 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.113 4.113 26 H 0.104 0.896 27 C -0.193 4.193 28 C -0.049 4.049 29 C -0.178 4.178 30 C -0.103 4.103 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.100 0.900 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.005 2.608 22.145 23.691 hybrid contribution 0.159 -1.054 -2.230 2.471 sum 8.165 1.553 19.915 21.580 Atomic orbital electron populations 1.21731 0.91445 1.02061 1.03908 1.22201 0.97936 0.99998 0.85789 0.85755 1.22302 0.77098 0.88148 0.85768 1.90457 1.55380 1.15717 1.83321 1.48105 1.65763 1.08197 1.11684 1.21999 1.02995 0.78147 1.03736 1.19253 0.94639 0.93005 0.82772 1.21525 0.94138 1.38037 1.03349 0.95209 1.25787 1.00889 0.95185 0.96552 1.70044 1.31385 1.43584 1.13398 0.85765 0.80145 0.79418 0.77916 1.20414 1.19933 1.16425 1.66346 1.03838 1.18645 1.30402 1.23500 0.98035 0.89701 1.00320 1.22970 0.94032 0.93383 0.98605 0.88537 1.23547 0.97229 0.95699 0.95266 0.89808 1.22556 0.94748 0.98754 0.98844 1.22667 0.96843 0.97069 0.98708 1.23547 0.96545 0.95504 0.95720 0.89638 1.23973 0.97209 0.99834 0.98293 1.22174 0.94584 0.93081 0.95076 1.21638 1.00403 1.01256 0.94508 1.23541 0.89600 0.98563 0.98609 0.94032 0.88265 0.91797 0.90608 0.91561 0.89058 0.93879 0.96522 0.92291 0.92168 0.90665 0.90395 0.92139 0.92194 0.89531 0.90325 0.93428 0.92066 0.92008 0.91008 0.89981 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 8.59 71.98 0.62 -3.05 16 2 C 0.05 1.55 2.40 44.17 0.11 1.65 16 3 H 0.12 2.96 6.03 -2.39 -0.01 2.95 16 4 C 0.48 18.70 5.21 87.66 0.46 19.15 16 5 O -0.57 -26.23 9.54 -3.03 -0.03 -26.26 16 6 N -0.61 -24.31 2.86 -851.14 -2.43 -26.74 16 7 C 0.07 2.11 10.05 127.77 1.28 3.39 16 8 C 0.23 11.01 4.28 85.63 0.37 11.38 16 9 C -0.53 -31.22 9.94 25.60 0.25 -30.97 16 10 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 11 C 0.01 0.83 5.47 84.65 0.46 1.29 16 12 N -0.94 -59.81 13.96 21.45 0.30 -59.52 16 13 Si 0.94 44.95 27.47 68.60 1.88 46.84 16 14 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 17 N -0.47 -12.90 5.55 -859.56 -4.77 -17.67 16 18 C 0.01 0.35 3.97 86.42 0.34 0.69 16 19 C -0.07 -1.72 3.04 -8.45 -0.03 -1.75 16 20 H 0.10 2.01 7.85 -2.39 -0.02 1.99 16 21 C -0.10 -2.56 4.39 -7.36 -0.03 -2.60 16 22 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 23 C -0.11 -2.22 6.21 32.19 0.20 -2.02 16 24 C -0.12 -2.25 6.01 32.19 0.19 -2.05 16 25 C -0.09 -2.35 4.09 -7.43 -0.03 -2.38 16 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 27 C -0.16 -4.89 6.03 33.34 0.20 -4.69 16 28 C -0.05 -1.12 0.77 -49.90 -0.04 -1.16 16 29 C -0.12 -2.08 8.02 71.98 0.58 -1.50 16 30 C 0.02 0.68 4.91 86.29 0.42 1.10 16 31 H 0.04 1.32 7.03 -2.39 -0.02 1.31 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 2.04 8.09 -2.39 -0.02 2.02 16 36 H 0.09 2.10 6.03 -2.39 -0.01 2.08 16 37 H 0.04 1.96 7.13 -2.38 -0.02 1.94 16 38 H 0.02 0.88 6.79 -2.39 -0.02 0.86 16 39 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.06 2.25 4.19 -2.38 -0.01 2.24 16 41 H 0.07 2.02 7.77 -2.39 -0.02 2.00 16 42 H 0.08 1.29 7.96 -2.38 -0.02 1.27 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 1.37 5.74 -2.39 -0.01 1.35 16 46 H 0.08 3.10 3.23 -2.38 -0.01 3.09 16 47 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.07 1.04 6.52 -2.39 -0.02 1.03 16 51 H 0.08 2.01 7.93 -2.39 -0.02 1.99 16 52 H 0.04 1.35 4.27 -2.38 -0.01 1.34 16 Total: -1.00 -71.99 367.89 1.16 -70.84 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.85 Total: 26.01 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 5.36 Total: -13.50 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -6.91 Total: -103.92 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.03 Total: -26.26 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -71.99 1.16 -70.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452049144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.904 kcal (2) G-P(sol) polarization free energy of solvation -71.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds