Wall clock time and date at job start Tue Mar 31 2020 13:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46867 * 2 1 4 4 C 1.52998 * 109.46963 * 240.00731 * 2 1 3 5 5 C 1.50694 * 109.47646 * 120.00269 * 2 1 3 6 6 N 1.30915 * 126.48890 * 240.02674 * 5 2 1 7 7 N 1.29170 * 109.74616 * 179.97438 * 6 5 2 8 8 C 1.29631 * 109.45211 * 359.84908 * 7 6 5 9 9 N 1.34424 * 126.48166 * 59.99784 * 5 2 1 10 10 C 1.46308 * 129.75665 * 0.25541 * 9 5 2 11 11 C 1.53463 * 108.21139 * 163.62209 * 10 9 5 12 12 N 1.46961 * 109.74462 * 49.58480 * 11 10 9 13 13 C 1.46904 * 110.99996 * 165.13537 * 12 11 10 14 14 C 1.52999 * 109.46921 * 177.13106 * 13 12 11 15 15 C 1.53000 * 109.47230 * 280.96712 * 14 13 12 16 16 C 1.52998 * 109.47514 * 40.97014 * 14 13 12 17 17 C 1.53002 * 109.46888 * 160.96938 * 14 13 12 18 18 C 1.50705 * 109.47180 * 179.97438 * 17 14 13 19 19 H 1.07995 * 119.99830 * 0.02562 * 18 17 14 20 20 C 1.37876 * 119.99827 * 179.97438 * 18 17 14 21 21 N 1.31512 * 120.00174 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99778 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47107 * 89.99843 * 22 20 18 24 24 H 1.48494 * 109.47047 * 209.99889 * 22 20 18 25 25 H 1.48496 * 109.46881 * 330.00039 * 22 20 18 26 26 C 1.47386 * 111.25048 * 289.27200 * 12 11 10 27 27 H 1.09005 * 109.47168 * 299.99758 * 1 2 3 28 28 H 1.09000 * 109.47508 * 59.99054 * 1 2 3 29 29 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47141 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47858 * 300.00356 * 3 2 1 32 32 H 1.09001 * 109.46984 * 60.00684 * 3 2 1 33 33 H 1.08996 * 109.46906 * 299.99747 * 4 2 1 34 34 H 1.09000 * 109.47743 * 59.99777 * 4 2 1 35 35 H 1.09004 * 109.47412 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.72199 * 43.93014 * 10 9 5 37 37 H 1.09000 * 109.72037 * 283.31467 * 10 9 5 38 38 H 1.09005 * 109.42128 * 169.66585 * 11 10 9 39 39 H 1.09003 * 109.42441 * 289.49588 * 11 10 9 40 40 H 1.08997 * 109.47272 * 297.13229 * 13 12 11 41 41 H 1.09001 * 109.47209 * 57.13333 * 13 12 11 42 42 H 1.09000 * 109.47228 * 81.86269 * 15 14 13 43 43 H 1.09004 * 109.46923 * 201.86463 * 15 14 13 44 44 H 1.08997 * 109.47248 * 321.86027 * 15 14 13 45 45 H 1.09008 * 109.47015 * 59.99631 * 16 14 13 46 46 H 1.08997 * 109.47333 * 179.97438 * 16 14 13 47 47 H 1.08998 * 109.47026 * 300.00028 * 16 14 13 48 48 H 1.09008 * 109.47053 * 300.00009 * 17 14 13 49 49 H 1.09002 * 109.47426 * 59.99779 * 17 14 13 50 50 H 0.97002 * 119.99884 * 180.02562 * 21 20 18 51 51 H 1.09004 * 109.74947 * 169.71082 * 26 12 11 52 52 H 1.09003 * 109.75145 * 290.39223 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2303 6 7 2.7877 -0.2002 2.1700 7 7 3.0244 -1.0933 3.0727 8 6 2.4321 -2.2004 2.7504 9 7 1.7894 -1.9879 1.5709 10 6 1.0075 -3.0095 0.8740 11 6 1.3806 -4.3793 1.4566 12 7 1.3124 -4.3301 2.9238 13 6 1.3146 -5.6829 3.4966 14 6 1.3149 -5.5901 5.0237 15 6 2.7307 -5.2831 5.5157 16 6 0.3676 -4.4734 5.4671 17 6 0.8467 -6.9210 5.6157 18 6 0.8476 -6.8298 7.1200 19 1 1.1513 -5.9141 7.6052 20 6 0.4597 -7.9152 7.8766 21 7 0.0894 -9.0302 7.2856 22 14 0.4602 -7.8019 9.7412 23 1 -0.8638 -7.3177 10.2080 24 1 0.7283 -9.1436 10.3185 25 1 1.5164 -6.8545 10.1792 26 6 2.4081 -3.5181 3.4826 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 -1.7487 -1.2494 34 1 1.6766 -0.2072 -2.1393 35 1 3.1300 -0.7207 -1.2496 36 1 1.2392 -2.9872 -0.1909 37 1 -0.0562 -2.8238 1.0230 38 1 0.6849 -5.1324 1.0863 39 1 2.3934 -4.6403 1.1493 40 1 0.4253 -6.2192 3.1654 41 1 2.2053 -6.2165 3.1648 42 1 2.9195 -4.2126 5.4346 43 1 2.8285 -5.5914 6.5567 44 1 3.4529 -5.8266 4.9065 45 1 -0.6411 -4.6922 5.1166 46 1 0.3675 -4.4076 6.5551 47 1 0.7011 -3.5253 5.0454 48 1 -0.1620 -7.1397 5.2651 49 1 1.5216 -7.7166 5.2998 50 1 -0.1838 -9.7936 7.8180 51 1 2.2341 -3.3458 4.5448 52 1 3.3575 -4.0354 3.3442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597245363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:50 Heat of formation + Delta-G solvation = 83.603581 kcal Electronic energy + Delta-G solvation = -28714.616236 eV Core-core repulsion = 25136.710295 eV Total energy + Delta-G solvation = -3577.905941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.34646 -39.17259 -37.36463 -36.27045 -33.84317 -32.19001 -31.20311 -29.64748 -27.82732 -27.75820 -27.37752 -26.86637 -26.41595 -24.28876 -23.62624 -22.98108 -21.94805 -19.92196 -19.56230 -18.07023 -17.03113 -16.72840 -16.21341 -15.59192 -15.53470 -15.33145 -14.80063 -14.53620 -14.45556 -14.31851 -13.81395 -13.49834 -13.20011 -12.83400 -12.69749 -12.53906 -12.52542 -12.44332 -12.07374 -11.99237 -11.90495 -11.68090 -11.49509 -11.36604 -11.27060 -11.20952 -11.07715 -10.89706 -10.75668 -10.52278 -10.36841 -10.23016 -10.09046 -10.00104 -9.78151 -9.15211 -8.95410 -8.90540 -8.37300 -8.35122 -6.00313 -4.00405 1.82061 2.40088 2.87559 3.32125 3.38976 3.41895 3.59690 3.90364 4.20209 4.29062 4.33385 4.46298 4.52939 4.63648 4.73083 4.81707 5.01435 5.15174 5.22473 5.29927 5.34651 5.35642 5.36781 5.41234 5.45051 5.51825 5.55377 5.56604 5.58383 5.65347 5.74448 5.86872 5.90104 5.94590 6.06078 6.08110 6.17846 6.19893 6.39216 6.47699 6.58620 6.77943 6.83410 6.87304 7.01169 7.16408 7.23844 7.26399 7.63939 7.77750 7.99073 8.42657 8.77390 9.04582 9.62805 11.11219 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.002775 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.186800 B =10086.793282 C =10446.523275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.022 3.978 3 C -0.129 4.129 4 C -0.147 4.147 5 C 0.186 3.814 6 N -0.298 5.298 7 N -0.292 5.292 8 C 0.186 3.814 9 N -0.463 5.463 10 C 0.107 3.893 11 C 0.035 3.965 12 N -0.533 5.533 13 C 0.068 3.932 14 C -0.062 4.062 15 C -0.154 4.154 16 C -0.121 4.121 17 C 0.037 3.963 18 C -0.508 4.508 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.887 3.113 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.274 1.274 26 C 0.122 3.878 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.039 0.961 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.016 0.984 49 H 0.014 0.986 50 H 0.259 0.741 51 H 0.141 0.859 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 14.053 -19.707 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.019 3.981 3 C -0.187 4.187 4 C -0.204 4.204 5 C -0.082 4.082 6 N -0.138 5.138 7 N -0.131 5.131 8 C -0.082 4.082 9 N -0.154 5.154 10 C -0.016 4.016 11 C -0.094 4.094 12 N -0.258 5.258 13 C -0.058 4.058 14 C -0.062 4.062 15 C -0.211 4.211 16 C -0.178 4.178 17 C 0.000 4.000 18 C -0.547 4.547 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.715 3.285 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.199 1.199 26 C -0.007 4.007 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.035 0.965 49 H 0.032 0.968 50 H 0.069 0.931 51 H 0.158 0.842 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.622 15.084 -18.773 24.137 hybrid contribution -0.132 -1.555 0.077 1.562 sum 1.490 13.529 -18.696 23.126 Atomic orbital electron populations 1.21967 0.92912 1.02433 1.03027 1.19002 0.95693 0.95548 0.87865 1.21695 1.02038 0.92675 1.02259 1.22013 1.01882 1.00164 0.96386 1.24375 1.00862 0.82942 1.00038 1.74571 1.15552 1.23354 1.00287 1.74041 1.20987 0.97298 1.20817 1.24950 0.96774 0.99263 0.87244 1.45879 1.39385 1.10858 1.19233 1.22308 0.96605 0.86158 0.96558 1.22458 1.01592 0.95435 0.89900 1.62270 1.44036 1.15907 1.03570 1.22473 1.00802 0.85698 0.96840 1.20697 0.95381 0.99702 0.90433 1.22428 0.95772 0.99350 1.03541 1.21755 0.98583 0.96351 1.01090 1.19104 0.96073 0.89382 0.95442 1.21217 1.43749 0.98290 0.91412 0.92174 1.25000 0.95616 0.95549 0.98325 1.69958 1.45520 1.02968 1.35253 0.86665 0.78385 0.77241 0.86162 1.20766 1.21396 1.19859 1.21610 0.93841 0.84769 1.00500 0.91844 0.91061 0.92474 0.91680 0.91916 0.91584 0.92500 0.90952 0.91962 0.88557 0.88560 0.87926 0.93674 0.90162 0.94783 0.93370 0.90512 0.94239 0.93657 0.92412 0.93804 0.96532 0.96784 0.93131 0.84168 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.39 37.16 0.31 -0.74 16 2 C 0.02 0.19 0.83 -155.66 -0.13 0.06 16 3 C -0.13 -1.07 7.99 37.16 0.30 -0.78 16 4 C -0.15 -0.98 8.38 37.16 0.31 -0.67 16 5 C 0.19 2.35 6.32 -155.63 -0.98 1.37 16 6 N -0.30 -4.81 11.58 32.66 0.38 -4.43 16 7 N -0.29 -5.08 12.21 32.77 0.40 -4.68 16 8 C 0.19 2.80 7.87 -155.22 -1.22 1.58 16 9 N -0.46 -5.73 3.12 -110.78 -0.35 -6.08 16 10 C 0.11 0.95 5.85 -3.91 -0.02 0.93 16 11 C 0.03 0.35 5.55 -3.55 -0.02 0.33 16 12 N -0.53 -7.03 3.85 -235.25 -0.91 -7.94 16 13 C 0.07 1.04 4.43 -3.82 -0.02 1.02 16 14 C -0.06 -1.14 0.52 -154.51 -0.08 -1.22 16 15 C -0.15 -2.71 7.40 37.16 0.28 -2.44 16 16 C -0.12 -2.22 7.61 37.16 0.28 -1.93 16 17 C 0.04 0.89 3.96 -27.88 -0.11 0.78 16 18 C -0.51 -13.43 7.34 -34.44 -0.25 -13.68 16 19 H 0.06 1.55 5.90 -52.49 -0.31 1.24 16 20 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 22 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.12 1.72 3.56 -4.67 -0.02 1.70 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.39 6.23 -51.93 -0.32 0.07 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.34 5.41 -51.93 -0.28 0.06 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.61 5.59 -51.93 -0.29 0.32 16 37 H 0.10 0.81 7.39 -51.93 -0.38 0.42 16 38 H 0.10 0.84 8.01 -51.93 -0.42 0.43 16 39 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 40 H 0.08 1.23 7.98 -51.93 -0.41 0.82 16 41 H 0.03 0.50 7.68 -51.93 -0.40 0.10 16 42 H 0.05 0.76 4.76 -51.93 -0.25 0.51 16 43 H 0.08 1.54 6.23 -51.93 -0.32 1.21 16 44 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 45 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 46 H 0.06 1.15 6.62 -51.93 -0.34 0.81 16 47 H 0.04 0.74 5.07 -51.93 -0.26 0.47 16 48 H 0.02 0.42 8.13 -51.92 -0.42 0.00 16 49 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.14 2.17 3.21 -51.93 -0.17 2.00 16 52 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -31.56 379.59 -9.25 -40.81 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.74 Total: -2.00 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.47 Total: -12.23 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.26 Total: -48.56 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.56 -9.25 -40.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597245363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.418 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds