Wall clock time and date at job start Tue Mar 31 2020 13:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46867 * 2 1 4 4 C 1.52998 * 109.46963 * 240.00731 * 2 1 3 5 5 C 1.50694 * 109.47646 * 120.00269 * 2 1 3 6 6 N 1.30915 * 126.48890 * 240.02674 * 5 2 1 7 7 N 1.29170 * 109.74616 * 179.97438 * 6 5 2 8 8 C 1.29631 * 109.45211 * 359.84908 * 7 6 5 9 9 N 1.34424 * 126.48166 * 59.99784 * 5 2 1 10 10 C 1.46308 * 129.75665 * 0.25541 * 9 5 2 11 11 C 1.53463 * 108.21139 * 163.62209 * 10 9 5 12 12 N 1.46961 * 109.74462 * 49.58480 * 11 10 9 13 13 C 1.46904 * 110.99996 * 165.13537 * 12 11 10 14 14 C 1.52999 * 109.46921 * 177.13106 * 13 12 11 15 15 C 1.53000 * 109.47230 * 280.96712 * 14 13 12 16 16 C 1.52998 * 109.47514 * 40.97014 * 14 13 12 17 17 C 1.53002 * 109.46888 * 160.96938 * 14 13 12 18 18 C 1.50705 * 109.47180 * 179.97438 * 17 14 13 19 19 H 1.07995 * 119.99830 * 0.02562 * 18 17 14 20 20 C 1.37876 * 119.99827 * 179.97438 * 18 17 14 21 21 N 1.31512 * 120.00174 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99778 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47107 * 89.99843 * 22 20 18 24 24 H 1.48494 * 109.47047 * 209.99889 * 22 20 18 25 25 H 1.48496 * 109.46881 * 330.00039 * 22 20 18 26 26 C 1.47386 * 111.25048 * 289.27200 * 12 11 10 27 27 H 1.09005 * 109.47168 * 299.99758 * 1 2 3 28 28 H 1.09000 * 109.47508 * 59.99054 * 1 2 3 29 29 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47141 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47858 * 300.00356 * 3 2 1 32 32 H 1.09001 * 109.46984 * 60.00684 * 3 2 1 33 33 H 1.08996 * 109.46906 * 299.99747 * 4 2 1 34 34 H 1.09000 * 109.47743 * 59.99777 * 4 2 1 35 35 H 1.09004 * 109.47412 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.72199 * 43.93014 * 10 9 5 37 37 H 1.09000 * 109.72037 * 283.31467 * 10 9 5 38 38 H 1.09005 * 109.42128 * 169.66585 * 11 10 9 39 39 H 1.09003 * 109.42441 * 289.49588 * 11 10 9 40 40 H 1.08997 * 109.47272 * 297.13229 * 13 12 11 41 41 H 1.09001 * 109.47209 * 57.13333 * 13 12 11 42 42 H 1.09000 * 109.47228 * 81.86269 * 15 14 13 43 43 H 1.09004 * 109.46923 * 201.86463 * 15 14 13 44 44 H 1.08997 * 109.47248 * 321.86027 * 15 14 13 45 45 H 1.09008 * 109.47015 * 59.99631 * 16 14 13 46 46 H 1.08997 * 109.47333 * 179.97438 * 16 14 13 47 47 H 1.08998 * 109.47026 * 300.00028 * 16 14 13 48 48 H 1.09008 * 109.47053 * 300.00009 * 17 14 13 49 49 H 1.09002 * 109.47426 * 59.99779 * 17 14 13 50 50 H 0.97002 * 119.99884 * 180.02562 * 21 20 18 51 51 H 1.09004 * 109.74947 * 169.71082 * 26 12 11 52 52 H 1.09003 * 109.75145 * 290.39223 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2303 6 7 2.7877 -0.2002 2.1700 7 7 3.0244 -1.0933 3.0727 8 6 2.4321 -2.2004 2.7504 9 7 1.7894 -1.9879 1.5709 10 6 1.0075 -3.0095 0.8740 11 6 1.3806 -4.3793 1.4566 12 7 1.3124 -4.3301 2.9238 13 6 1.3146 -5.6829 3.4966 14 6 1.3149 -5.5901 5.0237 15 6 2.7307 -5.2831 5.5157 16 6 0.3676 -4.4734 5.4671 17 6 0.8467 -6.9210 5.6157 18 6 0.8476 -6.8298 7.1200 19 1 1.1513 -5.9141 7.6052 20 6 0.4597 -7.9152 7.8766 21 7 0.0894 -9.0302 7.2856 22 14 0.4602 -7.8019 9.7412 23 1 -0.8638 -7.3177 10.2080 24 1 0.7283 -9.1436 10.3185 25 1 1.5164 -6.8545 10.1792 26 6 2.4081 -3.5181 3.4826 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 -1.7487 -1.2494 34 1 1.6766 -0.2072 -2.1393 35 1 3.1300 -0.7207 -1.2496 36 1 1.2392 -2.9872 -0.1909 37 1 -0.0562 -2.8238 1.0230 38 1 0.6849 -5.1324 1.0863 39 1 2.3934 -4.6403 1.1493 40 1 0.4253 -6.2192 3.1654 41 1 2.2053 -6.2165 3.1648 42 1 2.9195 -4.2126 5.4346 43 1 2.8285 -5.5914 6.5567 44 1 3.4529 -5.8266 4.9065 45 1 -0.6411 -4.6922 5.1166 46 1 0.3675 -4.4076 6.5551 47 1 0.7011 -3.5253 5.0454 48 1 -0.1620 -7.1397 5.2651 49 1 1.5216 -7.7166 5.2998 50 1 -0.1838 -9.7936 7.8180 51 1 2.2341 -3.3458 4.5448 52 1 3.3575 -4.0354 3.3442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597245363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:49 Heat of formation + Delta-G solvation = 65.686277 kcal Electronic energy + Delta-G solvation = -28715.393189 eV Core-core repulsion = 25136.710295 eV Total energy + Delta-G solvation = -3578.682893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.37238 -40.39986 -38.07532 -37.51316 -35.20141 -33.99579 -32.24180 -30.69426 -28.97041 -28.76407 -28.26504 -28.06663 -27.86554 -25.49718 -24.98674 -24.07657 -23.21857 -20.82828 -20.44557 -19.59633 -18.32076 -17.95943 -17.64949 -16.76894 -16.52105 -16.31700 -16.19763 -15.68556 -15.51401 -15.12415 -14.83729 -14.78161 -14.44206 -14.21065 -13.96942 -13.66559 -13.45548 -13.26824 -13.13502 -13.06490 -12.81138 -12.76769 -12.63165 -12.50164 -12.46640 -12.45132 -12.32211 -12.18511 -12.04986 -11.96065 -11.89489 -11.76119 -11.40442 -11.28764 -11.00406 -10.85158 -10.67432 -10.48357 -10.11105 -9.43050 -8.13315 -6.18534 0.82732 1.40796 1.41880 1.49892 1.51635 1.78086 2.43481 2.55961 3.10168 3.21321 3.30771 3.44860 3.66034 3.85920 3.92416 4.00288 4.10463 4.13554 4.16885 4.22344 4.27737 4.39747 4.50945 4.61051 4.61293 4.71349 4.73484 4.78137 4.81682 4.82148 4.86596 4.92043 4.96192 4.97008 4.99754 5.04126 5.11126 5.12210 5.22152 5.26501 5.33052 5.42961 5.53439 5.56148 5.60868 5.61605 5.76901 5.84536 5.92158 5.95451 6.02130 6.37556 6.96087 7.48226 7.69737 8.98601 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.002775 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.186800 B =10086.793282 C =10446.523275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.019 3.981 3 C -0.127 4.127 4 C -0.142 4.142 5 C 0.198 3.802 6 N -0.341 5.341 7 N -0.333 5.333 8 C 0.176 3.824 9 N -0.460 5.460 10 C 0.104 3.896 11 C 0.033 3.967 12 N -0.536 5.536 13 C 0.081 3.919 14 C -0.057 4.057 15 C -0.148 4.148 16 C -0.110 4.110 17 C 0.045 3.955 18 C -0.513 4.513 19 H 0.062 0.938 20 C 0.000 4.000 21 N -0.934 5.934 22 Si 0.949 3.051 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 C 0.129 3.871 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.038 0.962 46 H 0.035 0.965 47 H 0.061 0.939 48 H -0.009 1.009 49 H -0.010 1.010 50 H 0.259 0.741 51 H 0.124 0.876 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 14.933 -22.192 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 C -0.185 4.185 4 C -0.200 4.200 5 C -0.071 4.071 6 N -0.180 5.180 7 N -0.172 5.172 8 C -0.094 4.094 9 N -0.150 5.150 10 C -0.018 4.018 11 C -0.095 4.095 12 N -0.261 5.261 13 C -0.046 4.046 14 C -0.057 4.057 15 C -0.205 4.205 16 C -0.167 4.167 17 C 0.007 3.993 18 C -0.551 4.551 19 H 0.080 0.920 20 C -0.197 4.197 21 N -0.576 5.576 22 Si 0.775 3.225 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.190 1.190 26 C -0.001 4.001 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.079 0.921 48 H 0.010 0.990 49 H 0.009 0.991 50 H 0.068 0.932 51 H 0.141 0.859 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.040 15.977 -21.267 26.620 hybrid contribution 0.035 -1.780 0.775 1.942 sum 1.076 14.196 -20.493 24.953 Atomic orbital electron populations 1.21968 0.91390 1.03139 1.03494 1.19301 0.96770 0.95305 0.86965 1.21694 1.01109 0.92879 1.02799 1.22009 1.01126 1.00847 0.96019 1.25173 0.98856 0.82958 1.00086 1.74483 1.17871 1.24154 1.01540 1.73932 1.22589 0.98429 1.22242 1.24958 0.97199 0.98904 0.88325 1.46066 1.39042 1.11346 1.18536 1.22643 0.96745 0.84446 0.97942 1.22622 1.02724 0.96837 0.87349 1.62169 1.43733 1.14333 1.05876 1.22175 1.01224 0.87036 0.94170 1.20521 0.95619 0.96582 0.92978 1.22355 0.95467 1.00858 1.01807 1.21633 0.98259 0.97166 0.99608 1.18960 0.94162 0.91658 0.94487 1.21610 1.42434 0.98090 0.92998 0.91984 1.25807 0.95681 0.95415 1.02795 1.70078 1.46988 1.03696 1.36827 0.85686 0.78583 0.77262 0.80982 1.20302 1.21237 1.19030 1.21411 0.94305 0.84805 0.99536 0.93682 0.88331 0.91645 0.93154 0.88925 0.93446 0.91418 0.88296 0.93203 0.85182 0.87433 0.85572 0.93147 0.90104 0.94048 0.91331 0.93315 0.93166 0.94307 0.94590 0.92069 0.99020 0.99145 0.93188 0.85885 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.39 71.98 0.60 -0.98 16 2 C 0.02 0.29 0.83 -52.93 -0.04 0.24 16 3 C -0.13 -1.92 7.99 71.98 0.57 -1.34 16 4 C -0.14 -1.36 8.38 71.98 0.60 -0.76 16 5 C 0.20 4.77 6.32 138.20 0.87 5.64 16 6 N -0.34 -11.11 11.58 -50.58 -0.59 -11.70 16 7 N -0.33 -11.71 12.21 -50.24 -0.61 -12.32 16 8 C 0.18 5.16 7.87 138.10 1.09 6.25 16 9 N -0.46 -10.47 3.12 -504.40 -1.57 -12.05 16 10 C 0.10 1.47 5.85 86.57 0.51 1.98 16 11 C 0.03 0.54 5.55 86.45 0.48 1.02 16 12 N -0.54 -13.08 3.85 -898.18 -3.46 -16.54 16 13 C 0.08 2.35 4.43 86.30 0.38 2.73 16 14 C -0.06 -2.09 0.52 -52.18 -0.03 -2.12 16 15 C -0.15 -5.20 7.40 71.98 0.53 -4.67 16 16 C -0.11 -4.02 7.61 71.98 0.55 -3.48 16 17 C 0.04 2.19 3.96 29.85 0.12 2.31 16 18 C -0.51 -27.66 7.34 25.60 0.19 -27.48 16 19 H 0.06 3.26 5.90 -2.91 -0.02 3.25 16 20 C 0.00 0.00 5.46 84.65 0.46 0.46 16 21 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 22 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 26 C 0.13 3.49 3.56 85.49 0.30 3.80 16 27 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.63 6.23 -2.39 -0.01 0.61 16 30 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.49 5.41 -2.39 -0.01 0.48 16 34 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.13 1.01 5.59 -2.39 -0.01 0.99 16 37 H 0.11 1.36 7.39 -2.39 -0.02 1.35 16 38 H 0.13 1.55 8.01 -2.38 -0.02 1.53 16 39 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 40 H 0.08 2.37 7.98 -2.39 -0.02 2.35 16 41 H 0.04 1.15 7.68 -2.39 -0.02 1.13 16 42 H 0.07 2.14 4.76 -2.39 -0.01 2.12 16 43 H 0.05 1.97 6.23 -2.38 -0.01 1.96 16 44 H 0.05 1.62 7.66 -2.39 -0.02 1.60 16 45 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.04 1.45 6.62 -2.39 -0.02 1.43 16 47 H 0.06 2.03 5.07 -2.39 -0.01 2.02 16 48 H -0.01 -0.46 8.13 -2.38 -0.02 -0.48 16 49 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 50 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 51 H 0.12 3.74 3.21 -2.38 -0.01 3.73 16 52 H 0.07 1.84 7.70 -2.39 -0.02 1.82 16 Total: -1.00 -71.69 379.59 4.17 -67.52 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.91 Total: 10.69 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 7.19 Total: -16.39 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -5.95 Total: -108.03 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -71.69 4.17 -67.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597245363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.204 kcal (2) G-P(sol) polarization free energy of solvation -71.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds