Wall clock time and date at job start Tue Mar 31 2020 12:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35900 * 116.99959 * 2 1 4 4 C 1.38752 * 120.05360 * 359.97438 * 3 2 1 5 5 C 1.38131 * 119.94338 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05528 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11201 * 359.95426 * 6 5 4 8 8 C 1.50700 * 119.97192 * 179.74645 * 7 6 5 9 9 H 1.09004 * 109.47183 * 195.09344 * 8 7 6 10 10 C 1.52993 * 109.46983 * 75.08938 * 8 7 6 11 11 N 1.46903 * 109.47050 * 182.34898 * 10 8 7 12 12 C 1.46898 * 111.00419 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47567 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.46663 * 304.99750 * 13 12 11 15 15 C 1.53002 * 109.47473 * 64.99690 * 13 12 11 16 16 C 1.52997 * 109.47254 * 185.00289 * 13 12 11 17 17 C 1.50702 * 109.47510 * 175.00015 * 16 13 12 18 18 H 1.07999 * 119.99408 * 359.97438 * 17 16 13 19 19 C 1.37873 * 120.00206 * 179.97438 * 17 16 13 20 20 N 1.31505 * 120.00309 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99843 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47198 * 89.99791 * 21 19 17 23 23 H 1.48503 * 109.47106 * 210.00340 * 21 19 17 24 24 H 1.48508 * 109.47074 * 329.99687 * 21 19 17 25 25 N 1.46896 * 109.47106 * 315.08559 * 8 7 6 26 26 C 1.46910 * 110.99818 * 91.37007 * 25 8 7 27 27 C 1.46904 * 111.00346 * 215.32197 * 25 8 7 28 28 C 1.38172 * 120.05586 * 0.02562 * 7 6 5 29 29 H 1.09002 * 109.47436 * 299.99755 * 1 2 3 30 30 H 1.08994 * 109.47543 * 60.00086 * 1 2 3 31 31 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.03357 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.96940 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.94594 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47593 * 302.34617 * 10 8 7 36 36 H 1.08995 * 109.47323 * 62.35174 * 10 8 7 37 37 H 1.00900 * 111.00383 * 303.95554 * 11 10 8 38 38 H 1.09010 * 109.46787 * 300.00568 * 12 11 10 39 39 H 1.08998 * 109.47038 * 59.99890 * 12 11 10 40 40 H 1.09001 * 109.46777 * 59.99929 * 15 13 12 41 41 H 1.08995 * 109.46894 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47005 * 300.00202 * 15 13 12 43 43 H 1.09002 * 109.46979 * 294.99472 * 16 13 12 44 44 H 1.08997 * 109.47573 * 54.99658 * 16 13 12 45 45 H 0.96996 * 120.00617 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.46725 * 60.58814 * 26 25 8 47 47 H 1.08999 * 109.47051 * 180.59165 * 26 25 8 48 48 H 1.08997 * 109.46804 * 300.59086 * 26 25 8 49 49 H 1.08999 * 109.46419 * 56.05207 * 27 25 8 50 50 H 1.08998 * 109.47148 * 176.04573 * 27 25 8 51 51 H 1.08997 * 109.46906 * 296.04729 * 27 25 8 52 52 H 1.07997 * 120.02725 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5172 -0.0007 8 6 5.5607 2.5983 -0.0070 9 1 5.9758 1.6261 -0.2729 10 6 6.0555 3.0012 1.3835 11 7 7.5183 3.1350 1.3629 12 6 8.0304 3.5212 2.6845 13 6 9.5535 3.6511 2.6233 14 1 9.9824 2.7230 2.2453 15 6 9.9302 4.8040 1.6906 16 6 10.0983 3.9307 4.0254 17 6 11.6048 3.9368 3.9872 18 1 12.1220 3.7586 3.0559 19 6 12.3228 4.1698 5.1409 20 7 11.6931 4.3872 6.2747 21 14 14.1902 4.1766 5.0935 22 1 14.6732 5.5521 4.8109 23 1 14.7203 3.7255 6.4053 24 1 14.6617 3.2574 4.0266 25 7 5.9929 3.6006 -0.9901 26 6 6.1309 4.9238 -0.3669 27 6 7.2444 3.1929 -1.6424 28 6 3.4310 1.2848 0.0003 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2127 2.3204 -0.0005 33 1 1.3338 4.5114 -0.0019 34 1 3.7921 4.6381 -0.0024 35 1 5.6076 3.9536 1.6668 36 1 5.7709 2.2365 2.1061 37 1 7.9548 2.2842 1.0409 38 1 7.5959 4.4772 2.9772 39 1 7.7593 2.7599 3.4158 40 1 9.5012 5.7321 2.0686 41 1 11.0153 4.8962 1.6467 42 1 9.5421 4.6048 0.6916 43 1 9.7397 4.9015 4.3676 44 1 9.7554 3.1548 4.7099 45 1 12.1981 4.5508 7.0865 46 1 6.8797 4.8767 0.4237 47 1 6.4417 5.6490 -1.1190 48 1 5.1737 5.2274 0.0568 49 1 7.1143 2.2101 -2.0955 50 1 7.5046 3.9172 -2.4142 51 1 8.0426 3.1488 -0.9015 52 1 4.0206 0.3800 0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602501522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:29 Heat of formation + Delta-G solvation = -21.920598 kcal Electronic energy + Delta-G solvation = -27276.600221 eV Core-core repulsion = 23661.825658 eV Total energy + Delta-G solvation = -3614.774563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27109 -40.00701 -38.22835 -37.34864 -35.22568 -33.74050 -32.69665 -31.32195 -29.35581 -28.64348 -28.40456 -27.86273 -26.69949 -25.02478 -23.76129 -23.41195 -22.84133 -21.21847 -20.54370 -18.66759 -18.42771 -17.48412 -17.17065 -16.95104 -16.61335 -16.59365 -16.18086 -16.11395 -15.70567 -15.28631 -14.98167 -14.60615 -14.43773 -14.34507 -14.12658 -13.83281 -13.72660 -13.40075 -13.30264 -13.15669 -13.02509 -12.81085 -12.74268 -12.64483 -12.43805 -12.38260 -12.20886 -12.11838 -11.98391 -11.85949 -11.67803 -11.59233 -11.49483 -11.09423 -10.92621 -10.54036 -9.78578 -9.62009 -9.09589 -8.83141 -8.17876 -6.26910 0.38091 0.55432 1.39839 1.40669 1.51485 2.37369 2.41448 2.75952 3.15469 3.16854 3.28992 3.87327 3.94843 3.97440 4.14343 4.18409 4.19304 4.29895 4.33958 4.37688 4.40383 4.51676 4.53763 4.58705 4.61864 4.69903 4.73909 4.83726 4.89407 4.90303 4.91706 4.94963 5.01488 5.08206 5.11565 5.25797 5.28507 5.37119 5.41647 5.47250 5.52176 5.55520 5.61093 5.70838 5.80829 5.86755 5.88795 5.96519 6.20873 6.28013 6.30354 6.42556 6.49785 6.89370 7.41384 8.94097 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.021848 B = 0.002234 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.264780 B =12529.501453 C =13085.525722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.112 3.888 4 C -0.214 4.214 5 C -0.085 4.085 6 C -0.150 4.150 7 C -0.031 4.031 8 C 0.130 3.870 9 H 0.084 0.916 10 C 0.041 3.959 11 N -0.670 5.670 12 C 0.079 3.921 13 C -0.071 4.071 14 H 0.053 0.947 15 C -0.110 4.110 16 C 0.032 3.968 17 C -0.527 4.527 18 H 0.061 0.939 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.961 3.039 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.263 1.263 25 N -0.528 5.528 26 C 0.004 3.996 27 C 0.022 3.978 28 C -0.164 4.164 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.341 0.659 38 H 0.062 0.938 39 H 0.015 0.985 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.068 0.932 43 H -0.011 1.011 44 H -0.016 1.016 45 H 0.261 0.739 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.044 0.956 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.903 -4.612 -16.778 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.067 3.933 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.168 4.168 7 C -0.033 4.033 8 C 0.021 3.979 9 H 0.102 0.898 10 C -0.089 4.089 11 N -0.301 5.301 12 C -0.050 4.050 13 C -0.090 4.090 14 H 0.071 0.929 15 C -0.168 4.168 16 C -0.005 4.005 17 C -0.565 4.565 18 H 0.079 0.921 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.786 3.214 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.187 1.187 25 N -0.251 5.251 26 C -0.144 4.144 27 C -0.126 4.126 28 C -0.183 4.183 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.153 0.847 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.160 0.840 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.007 0.993 44 H 0.002 0.998 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.063 0.937 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.160 -4.094 -17.215 29.146 hybrid contribution 1.252 -0.743 1.742 2.271 sum -21.907 -4.837 -15.473 27.253 Atomic orbital electron populations 1.23310 0.76559 1.05414 1.02191 1.86035 1.23411 1.27095 1.88888 1.19111 0.92330 0.84814 0.97087 1.21472 1.00954 0.92032 1.08785 1.21251 0.94546 0.97820 0.96696 1.21347 0.93999 0.98782 1.02709 1.19501 0.94686 0.92365 0.96716 1.20542 0.90637 0.96595 0.90147 0.89756 1.22543 0.88480 1.01169 0.96699 1.60689 1.04508 1.39076 1.25876 1.21827 0.94957 0.99259 0.88967 1.20977 0.93190 0.98651 0.96167 0.92873 1.21466 0.99874 0.96738 0.98674 1.19011 0.94901 0.94298 0.92328 1.21632 0.93002 1.47321 0.94526 0.92054 1.25962 1.03670 0.95209 0.95297 1.70096 1.37366 1.50240 0.99947 0.85510 0.79730 0.78669 0.77526 1.19902 1.21034 1.18733 1.62245 1.31490 1.02213 1.29165 1.22836 1.01887 0.89845 0.99831 1.22476 0.90564 1.00860 0.98666 1.20362 0.91940 0.98203 1.07793 0.91862 0.91666 0.86562 0.83603 0.83652 0.84748 0.90403 0.95375 0.84006 0.91988 0.96675 0.94695 0.94543 0.91306 0.99252 0.99809 0.92987 0.91918 0.92142 0.91533 0.91796 0.91594 0.93733 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.70 10.50 -92.43 -0.97 -7.67 16 3 C 0.11 2.33 6.69 22.51 0.15 2.48 16 4 C -0.21 -3.70 9.04 22.37 0.20 -3.50 16 5 C -0.09 -1.46 10.04 22.26 0.22 -1.24 16 6 C -0.15 -3.00 9.15 22.28 0.20 -2.79 16 7 C -0.03 -0.67 4.94 -19.88 -0.10 -0.77 16 8 C 0.13 2.72 2.39 44.17 0.11 2.82 16 9 H 0.08 1.71 7.41 -2.39 -0.02 1.70 16 10 C 0.04 0.96 4.30 86.30 0.37 1.33 16 11 N -0.67 -17.02 2.49 -513.90 -1.28 -18.30 16 12 C 0.08 2.60 5.07 86.30 0.44 3.03 16 13 C -0.07 -2.80 2.48 -10.80 -0.03 -2.83 16 14 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 15 C -0.11 -4.03 8.89 71.98 0.64 -3.39 16 16 C 0.03 1.68 4.45 29.85 0.13 1.82 16 17 C -0.53 -29.67 8.41 25.60 0.22 -29.46 16 18 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 19 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 20 N -0.94 -57.41 13.29 21.44 0.28 -57.13 16 21 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 25 N -0.53 -11.06 4.58 -927.72 -4.25 -15.30 16 26 C 0.00 0.08 7.96 127.69 1.02 1.09 16 27 C 0.02 0.44 9.25 127.69 1.18 1.62 16 28 C -0.16 -3.62 9.61 22.37 0.21 -3.41 16 29 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 30 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.15 1.75 6.30 -2.91 -0.02 1.73 16 33 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.14 2.54 4.74 -2.91 -0.01 2.52 16 35 H 0.08 1.86 6.52 -2.39 -0.02 1.84 16 36 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.34 8.30 8.23 -89.69 -0.74 7.56 16 38 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.04 1.44 6.95 -2.39 -0.02 1.42 16 42 H 0.07 2.13 7.75 -2.39 -0.02 2.11 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 45 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.06 1.53 5.24 -2.39 -0.01 1.51 16 47 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.07 1.30 4.72 -2.39 -0.01 1.29 16 49 H 0.06 1.15 7.97 -2.39 -0.02 1.14 16 50 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.04 0.95 6.22 -2.39 -0.01 0.93 16 52 H 0.13 2.66 8.00 -2.91 -0.02 2.64 16 Total: -1.00 -65.80 399.86 2.51 -63.28 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.16 Total: 20.18 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 6.54 Total: -31.65 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -5.24 Total: -90.73 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.97 Total: -7.67 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.80 2.51 -63.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602501522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.362 kcal (2) G-P(sol) polarization free energy of solvation -65.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds