Wall clock time and date at job start Tue Mar 31 2020 12:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.47043 * 2 1 4 4 C 1.46897 * 110.99773 * 66.04844 * 3 2 1 5 5 C 1.53004 * 109.46771 * 199.74335 * 4 3 2 6 6 C 1.46907 * 110.99735 * 190.00220 * 3 2 1 7 7 C 1.52991 * 109.47203 * 72.22499 * 6 3 2 8 8 N 1.46897 * 109.47425 * 174.08721 * 7 6 3 9 9 C 1.46905 * 111.00524 * 71.07777 * 8 7 6 10 10 C 1.50700 * 109.46699 * 67.19267 * 9 8 7 11 11 C 1.38236 * 119.99855 * 272.05909 * 10 9 8 12 12 C 1.38237 * 119.99667 * 179.76947 * 11 10 9 13 13 C 1.38240 * 119.99844 * 0.50383 * 12 11 10 14 14 C 1.38231 * 119.99968 * 359.74854 * 13 12 11 15 15 C 1.38230 * 119.99896 * 92.33287 * 10 9 8 16 16 C 1.46902 * 111.00337 * 195.03691 * 8 7 6 17 17 C 1.53001 * 109.47109 * 169.99416 * 16 8 7 18 18 H 1.08999 * 109.47018 * 60.00144 * 17 16 8 19 19 O 1.42891 * 109.47333 * 299.99954 * 17 16 8 20 20 C 1.50701 * 109.46803 * 179.97438 * 17 16 8 21 21 H 1.07997 * 120.00418 * 0.02562 * 20 17 16 22 22 C 1.37876 * 119.99784 * 180.02562 * 20 17 16 23 23 N 1.31519 * 120.00309 * 180.02562 * 22 20 17 24 24 Si 1.86810 * 120.00070 * 0.02562 * 22 20 17 25 25 H 1.48499 * 109.46804 * 270.00072 * 24 22 20 26 26 H 1.48494 * 109.47031 * 30.00067 * 24 22 20 27 27 H 1.48497 * 109.47197 * 150.00179 * 24 22 20 28 28 H 1.08992 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46851 * 300.00094 * 1 2 3 30 30 H 1.09005 * 109.46805 * 59.99548 * 1 2 3 31 31 H 1.09006 * 109.46951 * 240.00618 * 2 1 3 32 32 H 1.08994 * 109.47225 * 120.00328 * 2 1 3 33 33 H 1.08991 * 109.47370 * 319.74206 * 4 3 2 34 34 H 1.09000 * 109.47018 * 79.74505 * 4 3 2 35 35 H 1.08999 * 109.47080 * 64.44753 * 5 4 3 36 36 H 1.09010 * 109.46897 * 184.44290 * 5 4 3 37 37 H 1.09000 * 109.47210 * 304.43996 * 5 4 3 38 38 H 1.09000 * 109.47004 * 312.21643 * 6 3 2 39 39 H 1.09006 * 109.46516 * 192.22246 * 6 3 2 40 40 H 1.09001 * 109.47837 * 54.08153 * 7 6 3 41 41 H 1.09008 * 109.46935 * 294.07985 * 7 6 3 42 42 H 1.08993 * 109.47076 * 187.19623 * 9 8 7 43 43 H 1.09000 * 109.46673 * 307.20061 * 9 8 7 44 44 H 1.07995 * 120.00541 * 359.97438 * 11 10 9 45 45 H 1.08000 * 119.99666 * 180.22835 * 12 11 10 46 46 H 1.08003 * 119.99603 * 179.72161 * 13 12 11 47 47 H 1.08003 * 119.99919 * 179.97438 * 14 13 12 48 48 H 1.08001 * 120.00054 * 359.97438 * 15 10 9 49 49 H 1.08999 * 109.47063 * 49.99588 * 16 8 7 50 50 H 1.08995 * 109.46887 * 289.99716 * 16 8 7 51 51 H 0.96702 * 114.00082 * 300.00151 * 19 17 16 52 52 H 0.97002 * 120.00097 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 1.7378 3.5813 1.0459 6 6 3.4686 1.4311 -0.2382 7 6 3.7561 1.0872 -1.7010 8 7 5.1876 1.2706 -1.9749 9 6 5.9873 0.2281 -1.3177 10 6 5.6935 -1.1061 -1.9540 11 6 4.6482 -1.8800 -1.4856 12 6 4.3758 -3.1016 -2.0724 13 6 5.1551 -3.5540 -3.1207 14 6 6.2036 -2.7824 -3.5856 15 6 6.4728 -1.5584 -3.0022 16 6 5.4475 1.3005 -3.4204 17 6 6.8922 1.7383 -3.6699 18 1 7.5730 1.0333 -3.1929 19 8 7.0961 3.0422 -3.1223 20 6 7.1589 1.7683 -5.1529 21 1 6.3762 1.5023 -5.8478 22 6 8.4022 2.1355 -5.6223 23 7 8.6349 2.1623 -6.9165 24 14 9.7562 2.5951 -4.4202 25 1 9.7025 4.0539 -4.1482 26 1 9.5662 1.8476 -3.1513 27 1 11.0763 2.2490 -5.0056 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 0.6601 1.7856 1.5506 34 1 2.3731 1.7753 2.0338 35 1 0.9803 3.8831 0.3226 36 1 1.5559 4.0864 1.9947 37 1 2.7252 3.8533 0.6730 38 1 3.9664 0.7094 0.4094 39 1 3.8409 2.4322 -0.0203 40 1 3.1752 1.7431 -2.3495 41 1 3.4797 0.0501 -1.8915 42 1 7.0467 0.4584 -1.4292 43 1 5.7333 0.1892 -0.2584 44 1 4.0423 -1.5288 -0.6635 45 1 3.5568 -3.7046 -1.7089 46 1 4.9450 -4.5105 -3.5762 47 1 6.8128 -3.1360 -4.4044 48 1 7.2919 -0.9556 -3.3655 49 1 4.7667 2.0055 -3.8975 50 1 5.2919 0.3059 -3.8382 51 1 6.5224 3.7222 -3.5013 52 1 9.5097 2.4203 -7.2467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929799662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:54 Heat of formation + Delta-G solvation = -14.381451 kcal Electronic energy + Delta-G solvation = -28672.224944 eV Core-core repulsion = 25057.777303 eV Total energy + Delta-G solvation = -3614.447642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.81788 -38.29285 -37.07095 -35.22433 -32.23154 -31.94884 -31.59796 -30.90675 -30.38762 -28.67612 -27.08304 -25.95755 -23.80513 -23.20799 -22.33011 -21.87866 -21.19315 -20.16341 -19.54158 -17.35471 -16.57541 -16.00448 -15.96077 -15.32707 -15.19127 -14.98411 -14.80706 -14.70229 -14.35456 -14.10994 -13.95585 -13.51035 -13.36517 -13.04759 -13.02387 -12.71708 -12.41035 -12.32248 -12.14101 -12.03604 -11.68996 -11.60456 -11.53338 -11.39682 -11.19129 -11.08288 -10.90951 -10.79093 -10.72275 -10.69186 -10.58919 -10.38440 -9.75669 -9.14633 -8.68342 -8.64602 -8.54088 -8.43612 -8.35442 -7.76490 -6.12392 -4.23903 1.52053 1.60065 3.45141 3.49478 3.62111 3.67062 3.97414 4.50629 4.53293 4.79355 4.91590 4.99512 5.01914 5.04876 5.11859 5.16744 5.19815 5.25282 5.27106 5.32245 5.39581 5.49065 5.52314 5.56071 5.62788 5.69739 5.78571 5.81160 5.86004 5.88605 5.93998 5.97472 6.03380 6.09956 6.11002 6.18147 6.20018 6.25773 6.31781 6.40874 6.61462 6.67664 6.74445 6.85207 7.02313 7.02914 7.20410 7.29111 7.41073 7.59592 7.70932 8.30476 8.84791 9.11484 9.51720 10.98053 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.011470 B = 0.004367 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.594928 B = 6410.719621 C = 8166.885547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 N -0.538 5.538 4 C 0.048 3.952 5 C -0.147 4.147 6 C 0.061 3.939 7 C 0.051 3.949 8 N -0.515 5.515 9 C 0.088 3.912 10 C -0.116 4.116 11 C -0.114 4.114 12 C -0.129 4.129 13 C -0.124 4.124 14 C -0.118 4.118 15 C -0.095 4.095 16 C 0.036 3.964 17 C 0.201 3.799 18 H 0.056 0.944 19 O -0.577 6.577 20 C -0.561 4.561 21 H 0.072 0.928 22 C 0.083 3.917 23 N -0.893 5.893 24 Si 0.913 3.087 25 H -0.278 1.278 26 H -0.268 1.268 27 H -0.307 1.307 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.132 0.868 49 H 0.067 0.933 50 H 0.042 0.958 51 H 0.360 0.640 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.335 -6.890 15.265 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 N -0.263 5.263 4 C -0.079 4.079 5 C -0.205 4.205 6 C -0.067 4.067 7 C -0.078 4.078 8 N -0.237 5.237 9 C -0.040 4.040 10 C -0.118 4.118 11 C -0.133 4.133 12 C -0.147 4.147 13 C -0.143 4.143 14 C -0.136 4.136 15 C -0.113 4.113 16 C -0.092 4.092 17 C 0.143 3.857 18 H 0.074 0.926 19 O -0.382 6.382 20 C -0.599 4.599 21 H 0.090 0.910 22 C -0.121 4.121 23 N -0.531 5.531 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.193 1.193 27 H -0.236 1.236 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.140 0.860 48 H 0.150 0.850 49 H 0.086 0.914 50 H 0.060 0.940 51 H 0.206 0.794 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.868 -6.439 15.304 21.006 hybrid contribution 0.394 -0.830 0.286 0.962 sum -12.474 -7.270 15.590 21.248 Atomic orbital electron populations 1.21822 0.95081 1.01318 1.02392 1.22137 0.95928 0.89314 1.00705 1.61952 1.14477 1.15334 1.34563 1.22111 1.00498 0.95222 0.90101 1.21773 1.02842 0.94605 1.01253 1.22110 0.86180 1.02001 0.96412 1.22144 0.89591 1.00088 0.95943 1.62375 1.04922 1.43604 1.12786 1.21308 1.00079 0.85214 0.97351 1.20726 0.96138 0.97443 0.97495 1.20980 0.97606 0.94599 1.00108 1.21029 0.99892 0.96486 0.97342 1.21096 0.96105 0.99758 0.97319 1.21211 0.97762 0.94867 0.99780 1.21390 0.99470 0.95565 0.94914 1.22910 1.00839 1.00447 0.84956 1.19859 0.90183 0.82328 0.93301 0.92604 1.86349 1.64509 1.19622 1.67731 1.21538 0.99100 1.48432 0.90819 0.91000 1.24996 0.98755 0.93286 0.95100 1.69964 1.23218 1.46894 1.12992 0.86258 0.78918 0.79759 0.80779 1.20382 1.19342 1.23558 0.92526 0.92790 0.91774 0.90525 0.95335 0.90864 0.95078 0.92078 0.92757 0.92179 0.95220 0.89704 0.90466 0.94345 0.89429 0.90855 0.86951 0.86735 0.86590 0.86036 0.84994 0.91435 0.93987 0.79427 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.88 37.16 0.37 -0.89 16 2 C 0.05 0.47 5.52 -3.82 -0.02 0.44 16 3 N -0.54 -5.94 4.39 -234.63 -1.03 -6.97 16 4 C 0.05 0.46 5.56 -3.82 -0.02 0.44 16 5 C -0.15 -1.38 10.07 37.16 0.37 -1.00 16 6 C 0.06 0.75 4.71 -3.83 -0.02 0.73 16 7 C 0.05 0.73 4.71 -3.83 -0.02 0.71 16 8 N -0.52 -8.53 4.54 -236.07 -1.07 -9.61 16 9 C 0.09 1.39 5.13 -4.97 -0.03 1.36 16 10 C -0.12 -1.78 4.03 -104.63 -0.42 -2.20 16 11 C -0.11 -1.53 7.85 -39.58 -0.31 -1.84 16 12 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 13 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 14 C -0.12 -1.75 10.05 -39.59 -0.40 -2.15 16 15 C -0.09 -1.57 7.88 -39.59 -0.31 -1.88 16 16 C 0.04 0.70 4.08 -3.82 -0.02 0.68 16 17 C 0.20 4.58 1.93 -27.88 -0.05 4.53 16 18 H 0.06 1.33 4.33 -51.93 -0.23 1.10 16 19 O -0.58 -13.14 10.90 -35.23 -0.38 -13.52 16 20 C -0.56 -15.24 9.34 -34.44 -0.32 -15.57 16 21 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 22 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 23 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 24 Si 0.91 23.12 26.18 -169.99 -4.45 18.67 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 27 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.42 6.25 -51.93 -0.32 0.10 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.82 6.47 -51.93 -0.34 0.49 16 32 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.07 0.63 5.88 -51.93 -0.31 0.32 16 34 H 0.03 0.30 8.00 -51.93 -0.42 -0.12 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 37 H 0.06 0.63 6.66 -51.93 -0.35 0.29 16 38 H 0.03 0.36 6.75 -51.93 -0.35 0.01 16 39 H 0.08 1.13 6.49 -51.93 -0.34 0.79 16 40 H 0.08 1.19 7.83 -51.93 -0.41 0.78 16 41 H 0.04 0.55 3.96 -51.92 -0.21 0.35 16 42 H 0.09 1.54 6.55 -51.93 -0.34 1.20 16 43 H 0.07 1.02 6.49 -51.93 -0.34 0.69 16 44 H 0.11 1.34 7.62 -52.49 -0.40 0.94 16 45 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 47 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 48 H 0.13 2.43 6.46 -52.49 -0.34 2.09 16 49 H 0.07 1.34 7.87 -51.93 -0.41 0.93 16 50 H 0.04 0.85 5.71 -51.93 -0.30 0.56 16 51 H 0.36 7.40 9.04 45.56 0.41 7.81 16 52 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -29.99 390.57 -10.29 -40.29 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.93 Total: 9.80 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.09 Total: -18.39 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -1.33 Total: -42.73 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.38 Total: -13.52 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.45 Total: 18.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.99 -10.29 -40.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929799662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.904 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds