Wall clock time and date at job start Tue Mar 31 2020 12:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 119.99869 * 2 1 4 4 O 1.21615 * 119.99519 * 179.97438 * 3 2 1 5 5 C 1.47100 * 120.00172 * 0.02562 * 3 2 1 6 6 C 1.32992 * 120.00193 * 186.20091 * 5 3 2 7 7 C 1.51272 * 120.84913 * 17.14434 * 6 5 3 8 8 C 1.53655 * 108.31160 * 128.61946 * 7 6 5 9 9 C 1.52965 * 109.32363 * 54.86164 * 8 7 6 10 10 C 1.52962 * 109.81452 * 296.27082 * 9 8 7 11 11 C 1.51269 * 120.84978 * 197.42577 * 6 5 3 12 12 C 1.46499 * 120.00282 * 179.97438 * 2 1 3 13 13 H 1.08996 * 109.51288 * 180.02562 * 12 2 1 14 14 C 1.52566 * 109.48812 * 60.00048 * 12 2 1 15 15 C 1.47087 * 114.32984 * 155.02180 * 14 12 2 16 16 C 1.54869 * 110.32175 * 62.79705 * 15 14 12 17 17 N 1.44580 * 109.60153 * 288.74038 * 16 15 14 18 18 C 1.36928 * 118.64670 * 270.72238 * 17 16 15 19 19 H 1.08003 * 120.00002 * 182.79186 * 18 17 16 20 20 C 1.38818 * 120.00273 * 2.79332 * 18 17 16 21 21 N 1.31620 * 119.99733 * 34.15514 * 20 18 17 22 22 Si 1.86797 * 119.99919 * 214.16099 * 20 18 17 23 23 H 1.48505 * 109.47268 * 94.99310 * 22 20 18 24 24 H 1.48509 * 109.46754 * 214.98920 * 22 20 18 25 25 H 1.48497 * 109.47555 * 334.98811 * 22 20 18 26 26 C 1.47609 * 122.70775 * 90.72675 * 17 16 15 27 27 C 1.50884 * 109.48778 * 300.12282 * 12 2 1 28 28 H 1.09003 * 109.47182 * 270.00481 * 1 2 3 29 29 H 1.09006 * 109.47303 * 30.00106 * 1 2 3 30 30 H 1.09000 * 109.47410 * 150.00233 * 1 2 3 31 31 H 1.08003 * 119.99788 * 6.19309 * 5 3 2 32 32 H 1.09002 * 109.62335 * 248.38998 * 7 6 5 33 33 H 1.09001 * 109.62633 * 8.96052 * 7 6 5 34 34 H 1.09002 * 109.62984 * 294.84174 * 8 7 6 35 35 H 1.09004 * 109.41990 * 174.75056 * 8 7 6 36 36 H 1.08998 * 109.41353 * 176.16488 * 9 8 7 37 37 H 1.08998 * 109.41474 * 56.37627 * 9 8 7 38 38 H 1.08999 * 109.48370 * 303.61848 * 10 9 8 39 39 H 1.09003 * 109.47789 * 183.57911 * 10 9 8 40 40 H 1.09002 * 109.62689 * 351.03991 * 11 6 5 41 41 H 1.09005 * 109.62430 * 111.41488 * 11 6 5 42 42 H 1.08999 * 108.51061 * 33.76394 * 14 12 2 43 43 H 1.09008 * 108.51292 * 276.27734 * 14 12 2 44 44 H 1.08999 * 109.33392 * 183.05988 * 15 14 12 45 45 H 1.09005 * 109.32435 * 302.53827 * 15 14 12 46 46 H 1.09000 * 109.44683 * 48.78352 * 16 15 14 47 47 H 1.08997 * 109.44923 * 168.70260 * 16 15 14 48 48 H 0.96993 * 119.99994 * 180.02562 * 21 20 18 49 49 H 1.09004 * 108.94756 * 197.17811 * 26 17 16 50 50 H 1.09002 * 108.94953 * 78.55197 * 26 17 16 51 51 H 1.08996 * 109.36824 * 332.03599 * 27 12 2 52 52 H 1.08993 * 109.36702 * 91.78760 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3550 1.1672 0.0005 5 6 1.4034 2.4412 0.0006 6 6 2.0624 3.5896 -0.1238 7 6 3.4824 3.6166 -0.6446 8 6 3.5583 4.6412 -1.7871 9 6 3.0443 5.9932 -1.2895 10 6 1.5663 5.8791 -0.9124 11 6 1.4134 4.9017 0.2577 12 6 2.1975 -1.2687 0.0006 13 1 3.2693 -1.0702 0.0009 14 6 1.8293 -2.0696 -1.2446 15 6 2.8557 -3.0331 -1.6709 16 6 3.0741 -4.1060 -0.5757 17 7 3.7531 -3.5137 0.5550 18 6 5.1222 -3.5144 0.5726 19 1 5.6515 -3.1185 1.4268 20 6 5.8300 -4.0237 -0.5075 21 7 5.3579 -3.8847 -1.7282 22 14 7.4524 -4.9064 -0.2284 23 1 7.2126 -6.3698 -0.1493 24 1 8.3742 -4.6162 -1.3561 25 1 8.0604 -4.4350 1.0417 26 6 3.0311 -2.9084 1.6913 27 6 1.8311 -2.0610 1.2312 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.3281 2.4439 0.1019 32 1 4.1610 3.9074 0.1574 33 1 3.7543 2.6293 -1.0179 34 1 2.9447 4.3041 -2.6226 35 1 4.5931 4.7436 -2.1140 36 1 3.1607 6.7373 -2.0774 37 1 3.6186 6.2997 -0.4154 38 1 0.9998 5.5127 -1.7685 39 1 1.1893 6.8589 -0.6192 40 1 0.3554 4.7404 0.4643 41 1 1.9017 5.3076 1.1438 42 1 1.6474 -1.3729 -2.0630 43 1 0.9056 -2.6132 -1.0459 44 1 2.5344 -3.5185 -2.5925 45 1 3.7925 -2.5059 -1.8515 46 1 2.1092 -4.4987 -0.2548 47 1 3.6800 -4.9176 -0.9784 48 1 5.8522 -4.2409 -2.4829 49 1 3.7190 -2.2739 2.2502 50 1 2.6731 -3.7025 2.3467 51 1 1.5446 -1.3766 2.0297 52 1 0.9932 -2.7190 1.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948209642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:40 Heat of formation + Delta-G solvation = 7.047296 kcal Electronic energy + Delta-G solvation = -28741.087340 eV Core-core repulsion = 25127.568919 eV Total energy + Delta-G solvation = -3613.518421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.05039 -38.47093 -37.31002 -35.24068 -33.01988 -32.33465 -31.79289 -31.07015 -29.98857 -27.12848 -26.80454 -25.72543 -24.05265 -23.07442 -22.96450 -21.54813 -20.09223 -19.40759 -18.74069 -18.00701 -16.98275 -16.37129 -15.79273 -15.33259 -15.17754 -14.77884 -14.45596 -14.29201 -13.89357 -13.75616 -13.54638 -13.37652 -13.09856 -12.85411 -12.74583 -12.56295 -12.37549 -12.23657 -12.00688 -11.97099 -11.73031 -11.42665 -11.23920 -11.14915 -10.98691 -10.76392 -10.64802 -10.43521 -10.39259 -10.23822 -9.94441 -9.91807 -9.64221 -9.62754 -9.16886 -9.14086 -8.81740 -8.19866 -8.09212 -6.82140 -5.70051 -2.91398 1.42713 3.39917 3.48576 3.56827 3.57863 3.58847 4.52613 4.57501 4.61750 4.74501 4.84343 5.02904 5.12121 5.21933 5.27324 5.33046 5.34805 5.43870 5.44675 5.47714 5.50075 5.55105 5.71041 5.75506 5.78318 5.83244 5.86195 5.91513 5.96262 5.97606 6.10635 6.15916 6.21346 6.25927 6.31802 6.51505 6.54269 6.66427 6.67288 6.79019 6.84265 6.92526 7.01656 7.19832 7.23157 7.30548 7.72898 7.83879 7.89155 8.26188 8.43035 8.61709 9.36415 9.99694 10.40176 11.31463 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.003436 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.089345 B = 8147.898164 C = 9110.447231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.609 5.609 3 C 0.542 3.458 4 O -0.531 6.531 5 C -0.231 4.231 6 C -0.026 4.026 7 C -0.111 4.111 8 C -0.117 4.117 9 C -0.123 4.123 10 C -0.117 4.117 11 C -0.091 4.091 12 C 0.149 3.851 13 H 0.117 0.883 14 C -0.107 4.107 15 C -0.127 4.127 16 C 0.184 3.816 17 N -0.597 5.597 18 C -0.258 4.258 19 H 0.074 0.926 20 C 0.005 3.995 21 N -0.882 5.882 22 Si 0.879 3.121 23 H -0.291 1.291 24 H -0.296 1.296 25 H -0.281 1.281 26 C 0.155 3.845 27 C -0.140 4.140 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.034 0.966 45 H 0.107 0.893 46 H 0.004 0.996 47 H 0.072 0.928 48 H 0.250 0.750 49 H 0.049 0.951 50 H 0.018 0.982 51 H 0.056 0.944 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 16.134 1.442 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.341 5.341 3 C 0.333 3.667 4 O -0.410 6.410 5 C -0.252 4.252 6 C -0.028 4.028 7 C -0.148 4.148 8 C -0.155 4.155 9 C -0.160 4.160 10 C -0.154 4.154 11 C -0.128 4.128 12 C 0.047 3.953 13 H 0.135 0.865 14 C -0.146 4.146 15 C -0.167 4.167 16 C 0.058 3.942 17 N -0.320 5.320 18 C -0.387 4.387 19 H 0.092 0.908 20 C -0.192 4.192 21 N -0.527 5.527 22 Si 0.709 3.291 23 H -0.218 1.218 24 H -0.223 1.223 25 H -0.207 1.207 26 C 0.028 3.972 27 C -0.180 4.180 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.125 0.875 46 H 0.023 0.977 47 H 0.090 0.910 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.036 0.964 51 H 0.075 0.925 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.416 16.063 1.306 20.344 hybrid contribution 0.437 -0.444 0.031 0.624 sum -11.979 15.619 1.337 19.729 Atomic orbital electron populations 1.21702 0.80819 1.02666 1.01211 1.48064 1.06410 1.06626 1.73018 1.18549 0.87362 0.84058 0.76772 1.90722 1.13579 1.86831 1.49878 1.22459 0.99721 0.92216 1.10795 1.22685 0.96425 0.93768 0.89922 1.21475 0.92745 1.02737 0.97826 1.21681 1.01293 0.94448 0.98053 1.21564 0.95847 0.97572 1.01057 1.21574 0.97063 0.98755 0.98024 1.20954 1.00450 0.92836 0.98589 1.20644 0.99053 0.80895 0.94673 0.86482 1.20824 0.99593 0.98097 0.96066 1.21397 0.99692 0.97964 0.97638 1.20644 0.92397 0.95023 0.86166 1.44110 1.02830 1.66014 1.18996 1.19310 0.81765 1.35995 1.01607 0.90795 1.24588 0.97487 1.02519 0.94653 1.70361 1.39803 1.45412 0.97086 0.86586 0.84192 0.81080 0.77290 1.21836 1.22278 1.20682 1.21078 0.92081 0.93727 0.90273 1.22235 0.99887 0.98489 0.97342 0.93130 0.91581 0.91091 0.85743 0.90670 0.86863 0.92067 0.91493 0.92087 0.91873 0.91786 0.91755 0.91024 0.89814 0.94267 0.94575 0.94716 0.87457 0.97725 0.90953 0.93955 0.93247 0.96371 0.92534 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 9.47 59.85 0.57 1.50 16 2 N -0.61 -9.93 2.59 -176.81 -0.46 -10.39 16 3 C 0.54 9.36 7.43 -12.66 -0.09 9.27 16 4 O -0.53 -11.30 12.75 5.26 0.07 -11.23 16 5 C -0.23 -3.02 8.75 -37.81 -0.33 -3.35 16 6 C -0.03 -0.32 5.35 -100.61 -0.54 -0.85 16 7 C -0.11 -1.50 5.20 -27.26 -0.14 -1.64 16 8 C -0.12 -1.26 5.95 -26.41 -0.16 -1.42 16 9 C -0.12 -1.05 5.81 -26.77 -0.16 -1.21 16 10 C -0.12 -0.92 5.94 -26.63 -0.16 -1.07 16 11 C -0.09 -0.80 6.04 -27.49 -0.17 -0.96 16 12 C 0.15 2.89 2.14 -69.22 -0.15 2.75 16 13 H 0.12 2.89 6.24 -51.93 -0.32 2.56 16 14 C -0.11 -2.08 3.95 -29.79 -0.12 -2.20 16 15 C -0.13 -2.89 4.85 -28.58 -0.14 -3.03 16 16 C 0.18 4.40 4.96 -4.08 -0.02 4.38 16 17 N -0.60 -14.84 2.29 -172.08 -0.39 -15.23 16 18 C -0.26 -7.14 9.53 -15.06 -0.14 -7.28 16 19 H 0.07 2.06 7.86 -52.48 -0.41 1.64 16 20 C 0.01 0.15 4.65 -17.43 -0.08 0.07 16 21 N -0.88 -24.80 8.54 55.49 0.47 -24.33 16 22 Si 0.88 21.92 29.67 -169.99 -5.04 16.87 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.16 3.27 6.24 -2.94 -0.02 3.25 16 27 C -0.14 -2.51 4.86 -27.30 -0.13 -2.64 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.63 6.18 -51.93 -0.32 0.31 16 30 H 0.07 0.81 7.00 -51.93 -0.36 0.45 16 31 H 0.12 1.27 6.27 -52.48 -0.33 0.94 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.11 1.94 5.15 -51.93 -0.27 1.67 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.04 0.74 8.04 -51.93 -0.42 0.33 16 43 H 0.04 0.63 6.95 -51.92 -0.36 0.27 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.11 2.91 6.25 -51.93 -0.32 2.59 16 46 H 0.00 0.10 8.07 -51.93 -0.42 -0.32 16 47 H 0.07 1.93 6.08 -51.93 -0.32 1.62 16 48 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.05 1.07 7.79 -51.93 -0.40 0.67 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 52 H 0.05 0.91 7.31 -51.93 -0.38 0.53 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -30.29 381.29 -10.84 -41.12 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -9.25 Total: 1.89 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.98 Total: -4.45 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.38 Total: -49.95 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.07 Total: -11.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.04 Total: 16.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.29 -10.84 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948209642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.172 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds