Wall clock time and date at job start Tue Mar 31 2020 12:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 119.99869 * 2 1 4 4 O 1.21615 * 119.99519 * 179.97438 * 3 2 1 5 5 C 1.47100 * 120.00172 * 0.02562 * 3 2 1 6 6 C 1.32992 * 120.00193 * 186.20091 * 5 3 2 7 7 C 1.51272 * 120.84913 * 17.14434 * 6 5 3 8 8 C 1.53655 * 108.31160 * 128.61946 * 7 6 5 9 9 C 1.52965 * 109.32363 * 54.86164 * 8 7 6 10 10 C 1.52962 * 109.81452 * 296.27082 * 9 8 7 11 11 C 1.51269 * 120.84978 * 197.42577 * 6 5 3 12 12 C 1.46499 * 120.00282 * 179.97438 * 2 1 3 13 13 H 1.08996 * 109.51288 * 180.02562 * 12 2 1 14 14 C 1.52566 * 109.48812 * 60.00048 * 12 2 1 15 15 C 1.47087 * 114.32984 * 155.02180 * 14 12 2 16 16 C 1.54869 * 110.32175 * 62.79705 * 15 14 12 17 17 N 1.44580 * 109.60153 * 288.74038 * 16 15 14 18 18 C 1.36928 * 118.64670 * 270.72238 * 17 16 15 19 19 H 1.08003 * 120.00002 * 182.79186 * 18 17 16 20 20 C 1.38818 * 120.00273 * 2.79332 * 18 17 16 21 21 N 1.31620 * 119.99733 * 34.15514 * 20 18 17 22 22 Si 1.86797 * 119.99919 * 214.16099 * 20 18 17 23 23 H 1.48505 * 109.47268 * 94.99310 * 22 20 18 24 24 H 1.48509 * 109.46754 * 214.98920 * 22 20 18 25 25 H 1.48497 * 109.47555 * 334.98811 * 22 20 18 26 26 C 1.47609 * 122.70775 * 90.72675 * 17 16 15 27 27 C 1.50884 * 109.48778 * 300.12282 * 12 2 1 28 28 H 1.09003 * 109.47182 * 270.00481 * 1 2 3 29 29 H 1.09006 * 109.47303 * 30.00106 * 1 2 3 30 30 H 1.09000 * 109.47410 * 150.00233 * 1 2 3 31 31 H 1.08003 * 119.99788 * 6.19309 * 5 3 2 32 32 H 1.09002 * 109.62335 * 248.38998 * 7 6 5 33 33 H 1.09001 * 109.62633 * 8.96052 * 7 6 5 34 34 H 1.09002 * 109.62984 * 294.84174 * 8 7 6 35 35 H 1.09004 * 109.41990 * 174.75056 * 8 7 6 36 36 H 1.08998 * 109.41353 * 176.16488 * 9 8 7 37 37 H 1.08998 * 109.41474 * 56.37627 * 9 8 7 38 38 H 1.08999 * 109.48370 * 303.61848 * 10 9 8 39 39 H 1.09003 * 109.47789 * 183.57911 * 10 9 8 40 40 H 1.09002 * 109.62689 * 351.03991 * 11 6 5 41 41 H 1.09005 * 109.62430 * 111.41488 * 11 6 5 42 42 H 1.08999 * 108.51061 * 33.76394 * 14 12 2 43 43 H 1.09008 * 108.51292 * 276.27734 * 14 12 2 44 44 H 1.08999 * 109.33392 * 183.05988 * 15 14 12 45 45 H 1.09005 * 109.32435 * 302.53827 * 15 14 12 46 46 H 1.09000 * 109.44683 * 48.78352 * 16 15 14 47 47 H 1.08997 * 109.44923 * 168.70260 * 16 15 14 48 48 H 0.96993 * 119.99994 * 180.02562 * 21 20 18 49 49 H 1.09004 * 108.94756 * 197.17811 * 26 17 16 50 50 H 1.09002 * 108.94953 * 78.55197 * 26 17 16 51 51 H 1.08996 * 109.36824 * 332.03599 * 27 12 2 52 52 H 1.08993 * 109.36702 * 91.78760 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3550 1.1672 0.0005 5 6 1.4034 2.4412 0.0006 6 6 2.0624 3.5896 -0.1238 7 6 3.4824 3.6166 -0.6446 8 6 3.5583 4.6412 -1.7871 9 6 3.0443 5.9932 -1.2895 10 6 1.5663 5.8791 -0.9124 11 6 1.4134 4.9017 0.2577 12 6 2.1975 -1.2687 0.0006 13 1 3.2693 -1.0702 0.0009 14 6 1.8293 -2.0696 -1.2446 15 6 2.8557 -3.0331 -1.6709 16 6 3.0741 -4.1060 -0.5757 17 7 3.7531 -3.5137 0.5550 18 6 5.1222 -3.5144 0.5726 19 1 5.6515 -3.1185 1.4268 20 6 5.8300 -4.0237 -0.5075 21 7 5.3579 -3.8847 -1.7282 22 14 7.4524 -4.9064 -0.2284 23 1 7.2126 -6.3698 -0.1493 24 1 8.3742 -4.6162 -1.3561 25 1 8.0604 -4.4350 1.0417 26 6 3.0311 -2.9084 1.6913 27 6 1.8311 -2.0610 1.2312 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.3281 2.4439 0.1019 32 1 4.1610 3.9074 0.1574 33 1 3.7543 2.6293 -1.0179 34 1 2.9447 4.3041 -2.6226 35 1 4.5931 4.7436 -2.1140 36 1 3.1607 6.7373 -2.0774 37 1 3.6186 6.2997 -0.4154 38 1 0.9998 5.5127 -1.7685 39 1 1.1893 6.8589 -0.6192 40 1 0.3554 4.7404 0.4643 41 1 1.9017 5.3076 1.1438 42 1 1.6474 -1.3729 -2.0630 43 1 0.9056 -2.6132 -1.0459 44 1 2.5344 -3.5185 -2.5925 45 1 3.7925 -2.5059 -1.8515 46 1 2.1092 -4.4987 -0.2548 47 1 3.6800 -4.9176 -0.9784 48 1 5.8522 -4.2409 -2.4829 49 1 3.7190 -2.2739 2.2502 50 1 2.6731 -3.7025 2.3467 51 1 1.5446 -1.3766 2.0297 52 1 0.9932 -2.7190 1.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948209642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:39 Heat of formation + Delta-G solvation = -8.128174 kcal Electronic energy + Delta-G solvation = -28741.745398 eV Core-core repulsion = 25127.568919 eV Total energy + Delta-G solvation = -3614.176479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.34805 -39.70577 -38.64485 -36.78966 -34.51392 -33.58899 -33.52600 -31.88712 -31.78245 -28.41254 -27.92874 -27.31148 -25.65826 -24.85732 -23.85665 -22.61823 -21.34575 -21.09109 -20.15951 -19.06235 -18.58836 -17.99584 -17.22243 -16.90232 -16.40639 -16.03073 -15.80328 -15.56771 -15.24605 -15.15003 -14.88311 -14.61172 -14.39504 -14.20445 -13.93706 -13.83324 -13.65717 -13.48589 -13.37083 -13.30127 -13.05495 -12.88374 -12.71078 -12.65277 -12.26314 -12.11786 -12.03964 -11.87374 -11.72416 -11.68887 -11.49997 -11.48409 -11.36838 -11.17818 -11.05458 -10.38627 -10.23655 -9.88547 -9.43788 -8.82867 -7.82242 -5.04723 0.38475 1.44923 1.48797 1.56101 2.16110 2.34933 2.55192 3.19639 3.62269 3.68194 3.77653 3.85335 4.00988 4.05489 4.14490 4.18764 4.28691 4.34146 4.40321 4.45355 4.49200 4.49632 4.57257 4.63202 4.67874 4.72871 4.79300 4.83686 4.92242 4.98221 5.00228 5.03220 5.10419 5.13406 5.16401 5.17769 5.20322 5.25613 5.34738 5.35877 5.43088 5.44447 5.46752 5.58283 5.65241 5.71436 5.77371 5.86780 6.27276 6.34224 6.60692 7.25295 7.34760 7.99992 8.31745 9.16058 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.003436 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.089345 B = 8147.898164 C = 9110.447231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.610 5.610 3 C 0.527 3.473 4 O -0.589 6.589 5 C -0.240 4.240 6 C -0.019 4.019 7 C -0.116 4.116 8 C -0.114 4.114 9 C -0.120 4.120 10 C -0.114 4.114 11 C -0.087 4.087 12 C 0.158 3.842 13 H 0.054 0.946 14 C -0.100 4.100 15 C -0.114 4.114 16 C 0.189 3.811 17 N -0.609 5.609 18 C -0.272 4.272 19 H 0.062 0.938 20 C -0.039 4.039 21 N -0.898 5.898 22 Si 0.938 3.062 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.279 1.279 26 C 0.150 3.850 27 C -0.125 4.125 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.069 0.931 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.033 0.967 47 H 0.039 0.961 48 H 0.245 0.755 49 H 0.030 0.970 50 H 0.038 0.962 51 H 0.075 0.925 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.673 17.811 2.310 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.320 3.680 4 O -0.472 6.472 5 C -0.260 4.260 6 C -0.020 4.020 7 C -0.153 4.153 8 C -0.152 4.152 9 C -0.158 4.158 10 C -0.151 4.151 11 C -0.123 4.123 12 C 0.055 3.945 13 H 0.073 0.927 14 C -0.138 4.138 15 C -0.154 4.154 16 C 0.063 3.937 17 N -0.332 5.332 18 C -0.402 4.402 19 H 0.080 0.920 20 C -0.236 4.236 21 N -0.544 5.544 22 Si 0.767 3.233 23 H -0.215 1.215 24 H -0.228 1.228 25 H -0.204 1.204 26 C 0.024 3.976 27 C -0.164 4.164 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.181 0.819 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.049 0.951 50 H 0.055 0.945 51 H 0.094 0.906 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.056 17.740 2.194 24.028 hybrid contribution 1.626 -0.930 -0.243 1.889 sum -14.430 16.810 1.951 22.240 Atomic orbital electron populations 1.22042 0.77320 1.04384 1.03201 1.48104 1.08434 1.05092 1.72428 1.19401 0.87044 0.85711 0.75838 1.90720 1.16303 1.87704 1.52470 1.22500 1.01161 0.89954 1.12364 1.23016 0.95296 0.95610 0.88127 1.21361 0.94221 1.01192 0.98513 1.21655 1.01313 0.95327 0.96879 1.21562 0.96716 0.95922 1.01583 1.21589 0.96130 0.99736 0.97654 1.21045 1.01549 0.90613 0.99130 1.20195 0.96251 0.82624 0.95451 0.92725 1.20667 0.99475 0.97521 0.96129 1.21135 0.98512 0.98042 0.97728 1.20528 0.92735 0.94300 0.86162 1.44266 1.02226 1.66613 1.20099 1.19453 0.83556 1.36083 1.01067 0.92004 1.25184 1.00462 1.03302 0.94620 1.70538 1.40816 1.45807 0.97255 0.85678 0.80961 0.79859 0.76793 1.21455 1.22773 1.20398 1.21234 0.92755 0.94315 0.89268 1.22083 0.98834 0.98428 0.97089 0.90881 0.89024 0.90345 0.81914 0.91609 0.91278 0.92399 0.91954 0.90583 0.91663 0.91679 0.89271 0.88567 0.88953 0.94238 0.91282 0.94403 0.92434 0.94909 0.94288 0.94533 0.95124 0.94451 0.90616 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 9.47 127.77 1.21 2.61 16 2 N -0.61 -19.27 2.59 -831.56 -2.16 -21.42 16 3 C 0.53 18.51 7.43 86.57 0.64 19.15 16 4 O -0.59 -27.09 12.75 -4.08 -0.05 -27.14 16 5 C -0.24 -5.84 8.75 23.43 0.20 -5.64 16 6 C -0.02 -0.43 5.35 -17.25 -0.09 -0.52 16 7 C -0.12 -3.28 5.20 30.25 0.16 -3.12 16 8 C -0.11 -2.48 5.95 30.80 0.18 -2.30 16 9 C -0.12 -1.81 5.81 30.57 0.18 -1.64 16 10 C -0.11 -1.37 5.94 30.66 0.18 -1.19 16 11 C -0.09 -1.21 6.04 30.10 0.18 -1.03 16 12 C 0.16 6.17 2.14 44.16 0.09 6.26 16 13 H 0.05 2.87 6.24 -2.39 -0.01 2.85 16 14 C -0.10 -3.80 3.95 28.61 0.11 -3.68 16 15 C -0.11 -5.32 4.85 29.39 0.14 -5.18 16 16 C 0.19 9.15 4.96 87.38 0.43 9.58 16 17 N -0.61 -31.05 2.29 -698.34 -1.60 -32.65 16 18 C -0.27 -15.70 9.53 84.04 0.80 -14.90 16 19 H 0.06 3.63 7.86 -2.91 -0.02 3.60 16 20 C -0.04 -2.27 4.65 84.86 0.39 -1.87 16 21 N -0.90 -53.01 8.54 21.65 0.18 -52.83 16 22 Si 0.94 46.82 29.67 68.60 2.04 48.85 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 25 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 26 C 0.15 6.31 6.24 86.49 0.54 6.85 16 27 C -0.12 -4.27 4.86 30.23 0.15 -4.13 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.33 6.18 -2.38 -0.01 1.32 16 30 H 0.08 1.44 7.00 -2.39 -0.02 1.42 16 31 H 0.16 2.62 6.27 -2.91 -0.02 2.60 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 2.62 5.15 -2.39 -0.01 2.61 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.10 0.94 7.94 -2.39 -0.02 0.92 16 41 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 43 H 0.07 2.20 6.95 -2.38 -0.02 2.19 16 44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 3.31 6.25 -2.38 -0.01 3.29 16 46 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 47 H 0.04 2.14 6.08 -2.39 -0.01 2.12 16 48 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.03 1.37 7.79 -2.39 -0.02 1.35 16 50 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.08 2.32 7.99 -2.39 -0.02 2.30 16 52 H 0.08 2.36 7.31 -2.39 -0.02 2.34 16 Total: -1.00 -73.12 381.29 4.80 -68.32 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.88 Total: 17.60 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.51 Total: -0.73 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -3.58 Total: -106.90 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.04 Total: 48.85 kcal Total: -73.12 4.80 -68.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948209642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.188 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds