Wall clock time and date at job start Tue Mar 31 2020 12:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99750 * 2 1 4 4 O 1.21284 * 120.00000 * 5.05037 * 3 2 1 5 5 C 1.50699 * 120.00014 * 185.05868 * 3 2 1 6 6 C 1.55933 * 115.92014 * 296.39849 * 5 3 2 7 7 C 1.58470 * 103.90338 * 199.42710 * 6 5 3 8 8 C 1.55925 * 103.91064 * 0.02562 * 7 6 5 9 9 C 1.55928 * 104.49563 * 289.45116 * 8 7 6 10 10 C 1.54582 * 104.64355 * 71.08683 * 9 8 7 11 11 C 1.56951 * 116.22817 * 177.40920 * 5 3 2 12 12 C 1.46496 * 120.00079 * 179.97438 * 2 1 3 13 13 H 1.09009 * 108.44942 * 174.11454 * 12 2 1 14 14 C 1.52570 * 108.51091 * 56.42933 * 12 2 1 15 15 C 1.50883 * 109.37885 * 153.71682 * 14 12 2 16 16 C 1.54005 * 110.09356 * 91.85268 * 15 14 12 17 17 N 1.47607 * 112.13974 * 319.49477 * 16 15 14 18 18 C 1.36933 * 118.64515 * 137.84424 * 17 16 15 19 19 H 1.07998 * 120.00329 * 206.80572 * 18 17 16 20 20 C 1.38811 * 119.99736 * 26.79777 * 18 17 16 21 21 N 1.31614 * 120.00387 * 15.10548 * 20 18 17 22 22 Si 1.86801 * 120.00092 * 195.10201 * 20 18 17 23 23 H 1.48506 * 109.46901 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47650 * 119.99985 * 22 20 18 25 25 H 1.48499 * 109.47152 * 240.00364 * 22 20 18 26 26 C 1.44581 * 122.71103 * 317.82283 * 17 16 15 27 27 C 1.47091 * 108.51651 * 291.66241 * 12 2 1 28 28 H 1.08996 * 109.47381 * 274.00975 * 1 2 3 29 29 H 1.09002 * 109.47045 * 34.00688 * 1 2 3 30 30 H 1.09003 * 109.46990 * 154.01144 * 1 2 3 31 31 H 1.08994 * 110.39737 * 318.75633 * 6 5 3 32 32 H 1.09000 * 110.40058 * 81.17753 * 6 5 3 33 33 H 1.08998 * 110.98489 * 241.33286 * 7 6 5 34 34 H 1.09004 * 110.52508 * 118.43922 * 7 6 5 35 35 H 1.08999 * 115.92095 * 160.57257 * 8 7 6 36 36 H 1.09000 * 110.40393 * 312.29577 * 9 8 7 37 37 H 1.08998 * 110.50126 * 189.92448 * 9 8 7 38 38 H 1.08996 * 110.40462 * 241.20968 * 10 9 8 39 39 H 1.09000 * 110.50489 * 118.83851 * 10 9 8 40 40 H 1.08998 * 112.02465 * 297.12241 * 11 5 3 41 41 H 1.08997 * 112.02423 * 63.64171 * 11 5 3 42 42 H 1.09000 * 109.48840 * 273.69563 * 14 12 2 43 43 H 1.09005 * 109.49032 * 33.74055 * 14 12 2 44 44 H 1.09000 * 109.36755 * 212.09202 * 15 14 12 45 45 H 1.08998 * 109.36246 * 331.70770 * 15 14 12 46 46 H 1.09001 * 108.96709 * 198.79705 * 16 15 14 47 47 H 1.09004 * 108.85535 * 80.11719 * 16 15 14 48 48 H 0.97003 * 120.00844 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.44910 * 330.70668 * 26 17 16 50 50 H 1.09004 * 109.44649 * 210.78748 * 26 17 16 51 51 H 1.09006 * 109.32465 * 304.31756 * 27 12 2 52 52 H 1.08994 * 109.32473 * 63.79273 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5359 2.2155 0.0925 5 6 3.6414 1.1699 -0.1151 6 6 4.4160 0.4927 1.0567 7 6 5.8813 1.0841 0.9367 8 6 5.7997 2.0415 -0.2914 9 6 5.6567 1.0905 -1.5188 10 6 4.2273 0.5136 -1.4018 11 6 4.3305 2.5790 -0.1694 12 6 2.1975 -1.2687 0.0006 13 1 3.2608 -1.0532 -0.1056 14 6 1.7469 -2.0887 -1.2045 15 6 2.8529 -3.0312 -1.6106 16 6 2.6797 -4.3872 -0.9012 17 7 2.2590 -4.2296 0.5048 18 6 1.2939 -5.0661 0.9989 19 1 0.6654 -4.7427 1.8155 20 6 1.1233 -6.3296 0.4501 21 7 2.0553 -6.8416 -0.3255 22 14 -0.4291 -7.3034 0.8123 23 1 -1.3132 -6.5115 1.7048 24 1 -1.1397 -7.5932 -0.4589 25 1 -0.0682 -8.5800 1.4798 26 6 2.8242 -3.2289 1.3821 27 6 1.9852 -1.9301 1.2971 28 1 -0.3634 0.0719 1.0251 29 1 -0.3633 0.8519 -0.5748 30 1 -0.3633 -0.9238 -0.4503 31 1 3.9624 0.7536 2.0128 32 1 4.4330 -0.5893 0.9258 33 1 6.6080 0.2925 0.7543 34 1 6.1432 1.6417 1.8359 35 1 6.5843 2.7948 -0.3612 36 1 6.3948 0.2901 -1.4674 37 1 5.7663 1.6483 -2.4488 38 1 4.2627 -0.5703 -1.2928 39 1 3.6324 0.7879 -2.2729 40 1 4.0289 3.1478 -1.0489 41 1 4.1775 3.1445 0.7497 42 1 0.8581 -2.6626 -0.9421 43 1 1.5162 -1.4199 -2.0338 44 1 2.8225 -3.1806 -2.6899 45 1 3.8150 -2.5998 -1.3343 46 1 3.6272 -4.9252 -0.9290 47 1 1.9268 -4.9692 -1.4328 48 1 1.9363 -7.7247 -0.7088 49 1 3.8501 -3.0189 1.0796 50 1 2.8170 -3.5993 2.4072 51 1 2.2831 -1.2550 2.0995 52 1 0.9289 -2.1748 1.4085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948554258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:53 Heat of formation + Delta-G solvation = -16.898200 kcal Electronic energy + Delta-G solvation = -30123.657464 eV Core-core repulsion = 26509.100688 eV Total energy + Delta-G solvation = -3614.556776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21728 -39.99489 -39.18973 -36.87677 -34.30595 -33.33844 -31.88817 -31.21425 -31.16999 -28.64844 -27.96339 -27.65939 -25.76328 -25.02149 -23.11857 -22.62474 -21.29467 -20.98102 -20.15073 -19.85254 -18.54496 -17.75941 -17.26688 -16.83079 -16.56991 -16.01338 -15.94505 -15.86839 -15.60652 -15.27502 -15.03051 -14.46440 -14.10477 -13.95728 -13.79637 -13.63635 -13.46434 -13.39789 -13.09694 -13.06468 -12.81449 -12.73462 -12.61372 -12.33280 -12.17805 -12.06311 -12.01407 -11.95503 -11.90022 -11.82437 -11.63401 -11.51729 -11.42755 -11.33069 -10.97537 -10.86106 -10.69824 -10.41138 -9.70170 -8.60533 -7.82273 -5.27574 1.45111 1.49157 1.53261 1.57124 2.01057 2.53420 3.27691 3.32429 3.44474 3.56511 3.63886 3.74992 3.79006 4.09393 4.18344 4.23970 4.26649 4.35577 4.42801 4.45322 4.45874 4.47319 4.54336 4.56162 4.60249 4.64447 4.71453 4.76894 4.82907 4.85862 4.96141 5.01923 5.04963 5.07324 5.11129 5.15674 5.17644 5.20171 5.26683 5.31020 5.32495 5.35737 5.39720 5.43071 5.46945 5.62212 5.68438 5.72888 5.87458 6.40866 6.45331 7.13480 7.23538 8.00365 8.37426 9.22373 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.019902 B = 0.004046 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.531575 B = 6918.178761 C = 7473.758715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.605 5.605 3 C 0.536 3.464 4 O -0.585 6.585 5 C -0.109 4.109 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.094 4.094 9 C -0.115 4.115 10 C -0.111 4.111 11 C -0.095 4.095 12 C 0.145 3.855 13 H 0.112 0.888 14 C -0.104 4.104 15 C -0.127 4.127 16 C 0.188 3.812 17 N -0.600 5.600 18 C -0.258 4.258 19 H 0.061 0.939 20 C -0.043 4.043 21 N -0.932 5.932 22 Si 0.954 3.046 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.295 1.295 26 C 0.161 3.839 27 C -0.142 4.142 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.067 0.933 46 H -0.002 1.002 47 H 0.038 0.962 48 H 0.247 0.753 49 H 0.050 0.950 50 H 0.040 0.960 51 H 0.065 0.935 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 16.279 -1.848 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.336 5.336 3 C 0.326 3.674 4 O -0.466 6.466 5 C -0.112 4.112 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.111 4.111 9 C -0.153 4.153 10 C -0.149 4.149 11 C -0.133 4.133 12 C 0.043 3.957 13 H 0.130 0.870 14 C -0.143 4.143 15 C -0.166 4.166 16 C 0.063 3.937 17 N -0.322 5.322 18 C -0.389 4.389 19 H 0.079 0.921 20 C -0.238 4.238 21 N -0.578 5.578 22 Si 0.783 3.217 23 H -0.195 1.195 24 H -0.220 1.220 25 H -0.222 1.222 26 C 0.033 3.967 27 C -0.183 4.183 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.017 0.983 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.083 0.917 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.840 16.648 -1.880 18.497 hybrid contribution -1.506 -1.167 0.227 1.919 sum 6.334 15.481 -1.653 16.808 Atomic orbital electron populations 1.21579 0.79680 1.02747 1.01697 1.48288 1.07106 1.06388 1.71814 1.20407 0.89676 0.82589 0.74775 1.90625 1.71151 1.32688 1.52142 1.22885 0.88831 1.00081 0.99445 1.23450 0.95924 0.99781 0.95923 1.23279 0.94511 0.98858 0.98382 1.23588 0.95738 0.96879 0.94944 1.22636 0.95019 0.99100 0.98511 1.22774 0.97211 1.00112 0.94812 1.23313 0.95025 0.93480 1.01491 1.20560 0.97928 0.81865 0.95321 0.87034 1.21196 0.99469 0.97133 0.96488 1.21850 0.98202 0.96318 1.00220 1.20800 0.96849 0.92628 0.83457 1.43816 1.44766 1.36437 1.07167 1.19453 1.09262 0.93883 1.16264 0.92104 1.25614 1.00024 0.97277 1.00928 1.70198 1.33205 1.16571 1.37831 0.85412 0.80619 0.78515 0.77133 1.19518 1.21965 1.22205 1.20684 0.94534 0.87809 0.93656 1.21715 1.01599 0.98438 0.96551 0.93043 0.91578 0.90355 0.92274 0.90587 0.89919 0.90768 0.86011 0.90099 0.90765 0.90575 0.92299 0.91578 0.91709 0.92981 0.91700 0.91030 0.91484 0.98347 0.94304 0.94336 0.93139 0.94108 0.91665 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.41 9.60 127.77 1.23 3.64 16 2 N -0.61 -17.54 2.58 -833.80 -2.15 -19.70 16 3 C 0.54 16.18 7.10 87.66 0.62 16.80 16 4 O -0.59 -21.45 16.21 -3.04 -0.05 -21.50 16 5 C -0.11 -2.55 0.87 -49.53 -0.04 -2.59 16 6 C -0.11 -2.33 5.37 33.57 0.18 -2.15 16 7 C -0.11 -1.72 6.41 33.56 0.22 -1.51 16 8 C -0.09 -1.37 5.14 -7.39 -0.04 -1.40 16 9 C -0.12 -1.74 6.20 32.15 0.20 -1.54 16 10 C -0.11 -2.24 5.20 32.13 0.17 -2.08 16 11 C -0.10 -1.97 5.68 33.35 0.19 -1.78 16 12 C 0.14 4.13 1.09 43.01 0.05 4.17 16 13 H 0.11 2.88 1.22 -2.38 0.00 2.87 16 14 C -0.10 -3.24 4.02 29.76 0.12 -3.12 16 15 C -0.13 -4.10 5.71 30.25 0.17 -3.93 16 16 C 0.19 8.30 4.66 86.51 0.40 8.71 16 17 N -0.60 -27.37 2.27 -698.24 -1.59 -28.95 16 18 C -0.26 -13.40 9.44 84.03 0.79 -12.60 16 19 H 0.06 3.15 7.87 -2.91 -0.02 3.13 16 20 C -0.04 -2.30 4.88 84.86 0.41 -1.89 16 21 N -0.93 -52.90 11.00 21.65 0.24 -52.66 16 22 Si 0.95 43.91 29.58 68.60 2.03 45.94 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 C 0.16 5.97 5.65 87.37 0.49 6.47 16 27 C -0.14 -4.53 4.84 29.39 0.14 -4.39 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.85 7.62 -2.39 -0.02 1.84 16 30 H 0.08 2.14 6.82 -2.39 -0.02 2.12 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.61 5.83 -2.39 -0.01 1.60 16 33 H 0.08 1.11 7.82 -2.39 -0.02 1.09 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.08 7.82 -2.39 -0.02 1.06 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.57 4.92 -2.39 -0.01 1.56 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.93 7.08 -2.39 -0.02 1.92 16 43 H 0.06 1.84 8.05 -2.38 -0.02 1.82 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.07 1.90 6.29 -2.39 -0.02 1.88 16 46 H 0.00 -0.08 8.03 -2.39 -0.02 -0.10 16 47 H 0.04 1.99 6.34 -2.38 -0.02 1.97 16 48 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 49 H 0.05 1.69 8.06 -2.39 -0.02 1.67 16 50 H 0.04 1.58 7.99 -2.38 -0.02 1.56 16 51 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 52 H 0.05 1.68 7.82 -2.39 -0.02 1.66 16 Total: -1.00 -63.14 374.15 4.67 -58.47 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.89 Total: 17.58 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.31 Total: 0.82 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -3.50 Total: -101.31 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -63.14 4.67 -58.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948554258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.569 kcal (2) G-P(sol) polarization free energy of solvation -63.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds