Wall clock time and date at job start Tue Mar 31 2020 12:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34774 * 119.99976 * 2 1 4 4 O 1.21284 * 119.99589 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00155 * 0.02562 * 3 2 1 6 6 C 1.53948 * 113.57907 * 277.71268 * 5 3 2 7 7 C 1.52898 * 86.78594 * 220.66379 * 6 5 3 8 8 C 1.52909 * 121.13957 * 150.61922 * 7 6 5 9 9 C 1.53953 * 86.78252 * 100.82267 * 8 7 6 10 10 C 1.52914 * 121.14179 * 259.18288 * 7 6 5 11 11 C 1.52909 * 88.04402 * 24.90226 * 7 6 5 12 12 C 1.46505 * 119.99329 * 180.02562 * 2 1 3 13 13 H 1.09003 * 108.30867 * 182.38079 * 12 2 1 14 14 C 1.52562 * 108.51545 * 64.76249 * 12 2 1 15 15 C 1.50888 * 109.36082 * 153.73007 * 14 12 2 16 16 C 1.53944 * 110.09428 * 91.88542 * 15 14 12 17 17 N 1.47580 * 112.12094 * 319.44868 * 16 15 14 18 18 C 1.36947 * 118.62192 * 137.87406 * 17 16 15 19 19 H 1.08001 * 119.99697 * 207.04877 * 18 17 16 20 20 C 1.38809 * 120.00133 * 27.05303 * 18 17 16 21 21 N 1.31625 * 119.99735 * 16.60275 * 20 18 17 22 22 Si 1.86794 * 119.99967 * 196.60224 * 20 18 17 23 23 H 1.48504 * 109.47023 * 94.74308 * 22 20 18 24 24 H 1.48508 * 109.46968 * 214.73843 * 22 20 18 25 25 H 1.48503 * 109.47303 * 334.73992 * 22 20 18 26 26 C 1.44574 * 122.73487 * 317.82655 * 17 16 15 27 27 C 1.47089 * 108.51286 * 299.99338 * 12 2 1 28 28 H 1.09006 * 109.46799 * 269.99824 * 1 2 3 29 29 H 1.08999 * 109.47087 * 29.99348 * 1 2 3 30 30 H 1.08995 * 109.47308 * 149.99997 * 1 2 3 31 31 H 1.08994 * 112.82603 * 48.90615 * 5 3 2 32 32 H 1.08999 * 113.66636 * 335.14511 * 6 5 3 33 33 H 1.09011 * 113.65993 * 106.19274 * 6 5 3 34 34 H 1.09001 * 113.66530 * 215.29541 * 8 7 6 35 35 H 1.09002 * 113.66431 * 346.35238 * 8 7 6 36 36 H 1.09001 * 113.57698 * 270.13364 * 9 8 7 37 37 H 1.09002 * 113.65088 * 139.35251 * 9 8 7 38 38 H 1.08998 * 113.65394 * 13.65142 * 10 7 6 39 39 H 1.08997 * 113.66552 * 144.70526 * 10 7 6 40 40 H 1.08997 * 113.66548 * 220.63020 * 11 7 6 41 41 H 1.08997 * 113.74922 * 89.57787 * 11 7 6 42 42 H 1.08994 * 109.49149 * 273.69630 * 14 12 2 43 43 H 1.09007 * 109.49297 * 33.74400 * 14 12 2 44 44 H 1.09000 * 109.36521 * 212.07611 * 15 14 12 45 45 H 1.09003 * 109.36159 * 331.82358 * 15 14 12 46 46 H 1.08996 * 108.94714 * 80.12102 * 16 15 14 47 47 H 1.09004 * 108.94813 * 198.75420 * 16 15 14 48 48 H 0.97001 * 119.99529 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.44724 * 330.73303 * 26 17 16 50 50 H 1.09001 * 109.44789 * 210.78902 * 26 17 16 51 51 H 1.08999 * 109.32910 * 63.79880 * 27 12 2 52 52 H 1.09002 * 109.18795 * 304.23073 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4722 0.0006 6 6 0.9131 2.9112 -1.3973 7 6 1.3164 4.3297 -0.9938 8 6 1.7815 5.3465 -2.0368 9 6 0.3653 5.9450 -1.9584 10 6 0.2716 5.3505 -0.5414 11 6 2.2996 3.7111 0.0006 12 6 2.1974 -1.2689 -0.0006 13 1 3.2641 -1.0486 0.0425 14 6 1.9054 -1.9962 -1.3095 15 6 3.0581 -2.9118 -1.6409 16 6 2.8028 -4.3148 -1.0609 17 7 2.2084 -4.2585 0.2887 18 6 1.1926 -5.1245 0.5948 19 1 0.4627 -4.8572 1.3446 20 6 1.1011 -6.3457 -0.0587 21 7 2.1377 -6.8189 -0.7175 22 14 -0.4931 -7.3177 -0.0030 23 1 -1.3042 -7.0076 -1.2076 24 1 -0.1864 -8.7704 0.0268 25 1 -1.2561 -6.9478 1.2162 26 6 2.6545 -3.3280 1.3013 27 6 1.8270 -2.0224 1.2071 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 0.6025 2.5081 0.7580 32 1 1.5117 2.5006 -2.2104 33 1 -0.1586 2.7893 -1.5552 34 1 2.5608 6.0179 -1.6762 35 1 2.0164 4.9039 -3.0049 36 1 -0.3356 5.5005 -2.6649 37 1 0.3495 7.0347 -1.9760 38 1 -0.6997 4.9109 -0.3148 39 1 0.6264 6.0230 0.2395 40 1 2.3356 4.2281 0.9594 41 1 3.2886 3.5249 -0.4181 42 1 0.9934 -2.5835 -1.2035 43 1 1.7777 -1.2674 -2.1099 44 1 3.1642 -2.9819 -2.7234 45 1 3.9754 -2.5073 -1.2131 46 1 2.1258 -4.8538 -1.7236 47 1 3.7487 -4.8539 -1.0092 48 1 2.0738 -7.6725 -1.1738 49 1 3.7093 -3.1012 1.1462 50 1 2.5200 -3.7727 2.2873 51 1 0.7662 -2.2698 1.1668 52 1 2.0211 -1.4081 2.0863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948675602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:09 Heat of formation + Delta-G solvation = 12.426413 kcal Electronic energy + Delta-G solvation = -28517.064144 eV Core-core repulsion = 24903.778979 eV Total energy + Delta-G solvation = -3613.285165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00354 -40.62966 -39.07193 -36.80052 -35.61443 -34.44958 -33.34983 -32.06412 -28.16734 -27.74241 -26.97693 -26.66616 -26.47352 -25.59703 -24.74140 -22.65103 -21.14512 -20.92608 -19.85524 -18.87902 -18.55463 -18.22337 -17.28989 -16.95895 -16.63516 -16.12211 -15.98245 -15.86922 -15.47120 -15.26280 -15.11377 -14.47406 -14.12951 -14.00829 -13.91033 -13.71498 -13.61526 -13.46512 -13.17146 -13.09426 -12.98867 -12.90743 -12.80175 -12.72295 -12.35994 -12.10770 -11.95170 -11.89008 -11.80029 -11.76038 -11.58396 -11.40455 -11.37636 -11.17573 -10.97208 -10.92638 -10.49484 -10.38452 -9.60629 -8.65254 -7.83705 -5.30795 1.48096 1.49353 1.58404 1.64177 2.06698 2.53407 3.29955 3.42717 3.45248 3.58551 3.65291 3.71962 3.73848 3.87642 4.00009 4.08824 4.13520 4.23360 4.40663 4.41449 4.42653 4.44467 4.60735 4.65981 4.68955 4.73326 4.74786 4.81919 4.87243 4.90146 4.94932 4.97410 5.00234 5.03904 5.07448 5.11377 5.12411 5.13152 5.16126 5.23544 5.29823 5.36971 5.46002 5.55016 5.55482 5.63132 5.67005 5.69003 5.78754 6.42497 6.51119 7.19673 7.23276 7.94533 8.36147 9.21953 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.026014 B = 0.002769 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.101568 B =10107.928127 C =10390.874659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.610 5.610 3 C 0.513 3.487 4 O -0.592 6.592 5 C -0.126 4.126 6 C -0.090 4.090 7 C -0.103 4.103 8 C -0.134 4.134 9 C -0.135 4.135 10 C -0.110 4.110 11 C -0.109 4.109 12 C 0.160 3.840 13 H 0.063 0.937 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.191 3.809 17 N -0.601 5.601 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.049 4.049 21 N -0.937 5.937 22 Si 0.964 3.036 23 H -0.286 1.286 24 H -0.299 1.299 25 H -0.267 1.267 26 C 0.158 3.842 27 C -0.131 4.131 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.043 0.957 47 H -0.009 1.009 48 H 0.248 0.752 49 H 0.031 0.969 50 H 0.044 0.956 51 H 0.063 0.937 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 25.325 -1.170 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.303 3.697 4 O -0.473 6.473 5 C -0.147 4.147 6 C -0.128 4.128 7 C -0.103 4.103 8 C -0.171 4.171 9 C -0.172 4.172 10 C -0.147 4.147 11 C -0.147 4.147 12 C 0.057 3.943 13 H 0.081 0.919 14 C -0.134 4.134 15 C -0.169 4.169 16 C 0.066 3.934 17 N -0.323 5.323 18 C -0.390 4.390 19 H 0.086 0.914 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.792 3.208 23 H -0.213 1.213 24 H -0.226 1.226 25 H -0.191 1.191 26 C 0.030 3.970 27 C -0.172 4.172 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.010 0.990 48 H 0.057 0.943 49 H 0.050 0.950 50 H 0.063 0.937 51 H 0.082 0.918 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.657 25.176 -1.242 26.071 hybrid contribution -0.111 -1.401 -0.042 1.406 sum -6.768 23.775 -1.285 24.753 Atomic orbital electron populations 1.21972 0.77819 1.04185 1.02910 1.48314 1.08295 1.05312 1.72160 1.21255 0.87585 0.86305 0.74547 1.90639 1.16267 1.87931 1.52457 1.22810 1.00212 0.90007 1.01679 1.22559 1.02398 0.94055 0.93789 1.22416 0.97502 0.93314 0.97042 1.22802 0.97919 0.97945 0.98464 1.22813 0.96434 1.00696 0.97264 1.22672 0.98180 0.96496 0.97346 1.22679 0.97503 0.94273 1.00229 1.19819 0.96384 0.82794 0.95327 0.91877 1.21114 0.99189 0.97275 0.95823 1.21837 0.97853 0.96724 1.00487 1.20729 0.95211 0.91996 0.85470 1.43836 1.40840 1.39031 1.08562 1.19499 1.03018 0.95565 1.20966 0.91392 1.25785 0.99842 0.97393 1.01409 1.70251 1.29511 1.19656 1.38890 0.85303 0.80069 0.77248 0.78137 1.21256 1.22645 1.19113 1.20693 0.95047 0.89326 0.91923 1.21558 1.01675 0.97408 0.96565 0.91484 0.88548 0.91262 0.84832 0.91040 0.88288 0.89869 0.92026 0.89802 0.90744 0.90159 0.89218 0.90350 0.91286 0.91987 0.92007 0.91186 0.93396 0.93820 0.99049 0.94292 0.95037 0.93713 0.91840 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 9.06 127.77 1.16 2.60 16 2 N -0.61 -16.74 2.59 -833.81 -2.16 -18.90 16 3 C 0.51 14.64 7.20 87.66 0.63 15.27 16 4 O -0.59 -22.31 15.18 -3.04 -0.05 -22.36 16 5 C -0.13 -2.39 2.79 -10.90 -0.03 -2.42 16 6 C -0.09 -1.41 6.65 30.88 0.21 -1.20 16 7 C -0.10 -1.47 1.11 -52.32 -0.06 -1.53 16 8 C -0.13 -1.83 7.84 30.89 0.24 -1.58 16 9 C -0.13 -1.38 8.08 31.23 0.25 -1.13 16 10 C -0.11 -1.13 7.84 30.89 0.24 -0.88 16 11 C -0.11 -2.10 7.17 30.89 0.22 -1.88 16 12 C 0.16 5.42 1.96 43.01 0.08 5.50 16 13 H 0.06 2.48 6.03 -2.39 -0.01 2.46 16 14 C -0.10 -3.36 4.34 29.76 0.13 -3.23 16 15 C -0.13 -5.07 5.71 30.23 0.17 -4.90 16 16 C 0.19 9.37 4.67 86.49 0.40 9.77 16 17 N -0.60 -29.67 2.26 -698.44 -1.58 -31.25 16 18 C -0.26 -13.91 9.43 84.03 0.79 -13.11 16 19 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 20 C -0.05 -2.70 4.84 84.86 0.41 -2.29 16 21 N -0.94 -55.38 11.11 21.65 0.24 -55.14 16 22 Si 0.96 44.22 29.58 68.60 2.03 46.25 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.16 6.67 5.66 87.37 0.49 7.17 16 27 C -0.13 -4.59 4.88 29.39 0.14 -4.45 16 28 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.10 1.32 5.78 -2.39 -0.01 1.30 16 30 H 0.07 1.50 7.25 -2.39 -0.02 1.49 16 31 H 0.13 1.90 7.85 -2.39 -0.02 1.88 16 32 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 33 H 0.10 1.09 7.70 -2.38 -0.02 1.07 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.72 7.42 -2.39 -0.02 1.71 16 42 H 0.06 2.39 7.23 -2.39 -0.02 2.38 16 43 H 0.06 1.97 8.05 -2.38 -0.02 1.95 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.05 1.87 7.32 -2.39 -0.02 1.85 16 46 H 0.04 2.37 6.40 -2.39 -0.02 2.35 16 47 H -0.01 -0.47 8.03 -2.39 -0.02 -0.49 16 48 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 50 H 0.04 1.91 7.99 -2.39 -0.02 1.89 16 51 H 0.06 2.25 7.62 -2.39 -0.02 2.24 16 52 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.31 389.72 4.85 -62.46 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.87 Total: 17.23 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 5.49 Total: 1.70 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.50 Total: -105.28 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.31 4.85 -62.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948675602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.888 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds