Wall clock time and date at job start Tue Mar 31 2020 12:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47022 * 2 1 4 4 C 1.34773 * 119.99776 * 275.62548 * 3 2 1 5 5 O 1.21285 * 120.00030 * 175.65314 * 4 3 2 6 6 C 1.50707 * 120.00209 * 355.65701 * 4 3 2 7 7 H 1.09000 * 109.46566 * 8.59287 * 6 4 3 8 8 C 1.52996 * 109.46863 * 248.59966 * 6 4 3 9 9 C 1.52998 * 109.46971 * 180.02562 * 8 6 4 10 10 C 1.52992 * 109.47432 * 59.99667 * 9 8 6 11 11 C 1.53003 * 109.47077 * 300.00187 * 10 9 8 12 12 C 1.52991 * 109.46932 * 59.99820 * 11 10 9 13 13 H 1.09005 * 109.47350 * 60.00741 * 12 11 10 14 14 C 1.53003 * 109.46932 * 180.02562 * 12 11 10 15 15 C 1.53002 * 117.50141 * 255.32655 * 14 12 11 16 16 C 1.53001 * 60.00052 * 252.51010 * 15 14 12 17 17 C 1.46500 * 120.00250 * 95.62472 * 3 2 1 18 18 C 1.53491 * 114.20612 * 59.99613 * 17 3 2 19 19 N 1.47065 * 87.98692 * 220.34705 * 18 17 3 20 20 C 1.36935 * 136.05691 * 207.08403 * 19 18 17 21 21 H 1.08003 * 120.00162 * 4.09462 * 20 19 18 22 22 C 1.38812 * 120.00349 * 184.08840 * 20 19 18 23 23 N 1.31615 * 120.00069 * 151.06940 * 22 20 19 24 24 Si 1.86802 * 119.99719 * 331.07766 * 22 20 19 25 25 H 1.48497 * 109.47294 * 89.99637 * 24 22 20 26 26 H 1.48507 * 109.46936 * 329.99273 * 24 22 20 27 27 H 1.48503 * 109.47032 * 209.99490 * 24 22 20 28 28 C 1.47062 * 87.88399 * 27.34660 * 19 18 17 29 29 H 1.09005 * 109.46670 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47497 * 300.00144 * 1 2 3 31 31 H 1.08998 * 109.47056 * 60.00270 * 1 2 3 32 32 H 1.08995 * 109.47456 * 239.99536 * 2 1 3 33 33 H 1.09005 * 109.46733 * 119.99532 * 2 1 3 34 34 H 1.09010 * 109.47122 * 299.99603 * 8 6 4 35 35 H 1.09002 * 109.47619 * 59.99382 * 8 6 4 36 36 H 1.09005 * 109.47094 * 299.99046 * 9 8 6 37 37 H 1.09004 * 109.47366 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.47460 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47598 * 60.00352 * 10 9 8 40 40 H 1.08997 * 109.47040 * 299.99737 * 11 10 9 41 41 H 1.09005 * 109.46896 * 180.02562 * 11 10 9 42 42 H 1.09000 * 115.55137 * 41.03920 * 14 12 11 43 43 H 1.09000 * 117.49462 * 0.02562 * 15 14 12 44 44 H 1.08998 * 117.50079 * 145.01685 * 15 14 12 45 45 H 1.08993 * 117.49541 * 252.50801 * 16 15 14 46 46 H 1.09005 * 117.49522 * 107.49091 * 16 15 14 47 47 H 1.08993 * 113.28203 * 193.06708 * 17 3 2 48 48 H 1.09007 * 113.46358 * 105.56714 * 18 17 3 49 49 H 1.09003 * 113.46817 * 335.13062 * 18 17 3 50 50 H 0.96996 * 120.00266 * 5.02846 * 23 22 20 51 51 H 1.09001 * 113.47040 * 87.43739 * 28 19 18 52 52 H 1.09005 * 113.46292 * 217.87710 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1351 2.0547 -1.1616 5 8 2.4636 3.2221 -1.1553 6 6 1.8573 1.3571 -2.4683 7 1 1.4330 0.3725 -2.2714 8 6 3.1625 1.2026 -3.2514 9 6 2.8804 0.4949 -4.5782 10 6 1.8891 1.3236 -5.3975 11 6 0.5838 1.4781 -4.6143 12 6 0.8660 2.1857 -3.2876 13 1 1.2905 3.1703 -3.4840 14 6 -0.4392 2.3397 -2.5041 15 6 -1.0793 3.7288 -2.4636 16 6 -0.3969 3.1642 -1.2159 17 6 2.3798 2.0304 1.2626 18 6 3.5028 1.3242 2.0345 19 7 2.7533 1.5955 3.2704 20 6 3.0627 1.7705 4.5929 21 1 4.0953 1.7808 4.9091 22 6 2.0491 1.9347 5.5270 23 7 2.2314 1.5458 6.7711 24 14 0.4263 2.7074 5.0181 25 1 -0.5058 1.6457 4.5611 26 1 0.6616 3.6696 3.9116 27 1 -0.1669 3.4215 6.1772 28 6 1.5248 1.5895 2.4621 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.5869 2.1872 -3.4482 35 1 3.8690 0.6126 -2.6675 36 1 2.4559 -0.4897 -4.3818 37 1 3.8102 0.3852 -5.1364 38 1 1.6878 0.8192 -6.3427 39 1 2.3136 2.3081 -5.5940 40 1 0.1593 0.4936 -4.4180 41 1 -0.1226 2.0681 -5.1983 42 1 -1.1065 1.4782 -2.5284 43 1 -0.5708 4.5329 -2.9955 44 1 -2.1680 3.7814 -2.4615 45 1 -1.0367 2.8455 -0.3931 46 1 0.5608 3.5971 -0.9267 47 1 2.5101 3.1087 1.1707 48 1 4.4589 1.8453 1.9834 49 1 3.5879 0.2625 1.8026 50 1 3.0974 1.2121 7.0530 51 1 1.0884 0.5978 2.3429 52 1 0.7956 2.3367 2.7753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950975267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:51 Heat of formation + Delta-G solvation = 24.852393 kcal Electronic energy + Delta-G solvation = -29625.718971 eV Core-core repulsion = 26012.972637 eV Total energy + Delta-G solvation = -3612.746334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06556 -40.38161 -38.59673 -37.22910 -36.50845 -34.53914 -32.01968 -31.50426 -31.40009 -29.55664 -27.00386 -25.67464 -24.68348 -24.23077 -23.60096 -22.98927 -21.66736 -21.11446 -20.69851 -19.72458 -19.60955 -18.34627 -17.65628 -17.06897 -16.69802 -16.44426 -15.90069 -15.77121 -15.33354 -15.07086 -14.98309 -14.79028 -14.51791 -14.30616 -14.06400 -13.86472 -13.53281 -13.40769 -13.29054 -13.17907 -13.14019 -12.78957 -12.66973 -12.58272 -12.30849 -12.09959 -12.07213 -11.93952 -11.91477 -11.73396 -11.62257 -11.33203 -11.24047 -11.17978 -10.93791 -10.68711 -10.67163 -10.40273 -9.57372 -9.27605 -8.76307 -5.43794 1.33331 1.45621 1.61939 1.64695 1.93567 2.44920 2.82679 2.88105 3.26209 3.45259 3.58185 3.59640 3.81443 3.95724 4.03738 4.10781 4.14366 4.15942 4.19211 4.33983 4.35564 4.40816 4.43322 4.45341 4.53942 4.55178 4.56617 4.62469 4.66211 4.68108 4.71158 4.82210 4.87994 4.91587 4.98258 5.03349 5.11730 5.13653 5.16994 5.18664 5.26067 5.29851 5.31244 5.37172 5.42936 5.44375 5.46588 5.60557 5.68826 5.91294 6.50683 6.64939 7.25279 7.29225 8.25563 8.78925 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.003945 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.930025 B = 7096.163506 C = 7736.212226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 N -0.591 5.591 4 C 0.529 3.471 5 O -0.587 6.587 6 C -0.094 4.094 7 H 0.117 0.883 8 C -0.107 4.107 9 C -0.111 4.111 10 C -0.121 4.121 11 C -0.103 4.103 12 C -0.038 4.038 13 H 0.054 0.946 14 C -0.135 4.135 15 C -0.171 4.171 16 C -0.215 4.215 17 C 0.125 3.875 18 C 0.115 3.885 19 N -0.650 5.650 20 C -0.312 4.312 21 H 0.052 0.948 22 C -0.068 4.068 23 N -0.946 5.946 24 Si 1.096 2.904 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.295 1.295 28 C 0.095 3.905 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.038 0.962 49 H 0.064 0.936 50 H 0.251 0.749 51 H 0.071 0.929 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 -6.082 -29.471 30.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.029 4.029 3 N -0.322 5.322 4 C 0.320 3.680 5 O -0.468 6.468 6 C -0.115 4.115 7 H 0.135 0.865 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.159 4.159 11 C -0.140 4.140 12 C -0.057 4.057 13 H 0.072 0.928 14 C -0.153 4.153 15 C -0.208 4.208 16 C -0.252 4.252 17 C 0.019 3.981 18 C -0.012 4.012 19 N -0.379 5.379 20 C -0.439 4.439 21 H 0.070 0.930 22 C -0.263 4.263 23 N -0.589 5.589 24 Si 0.923 3.077 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.223 1.223 28 C -0.030 4.030 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.116 0.884 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.061 0.939 51 H 0.088 0.912 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.768 -5.068 -28.662 30.125 hybrid contribution 2.165 0.161 0.759 2.300 sum -5.603 -4.907 -27.903 28.880 Atomic orbital electron populations 1.22421 0.94773 1.03718 1.02713 1.21888 0.95544 0.80954 1.04467 1.48068 1.64137 1.15008 1.04995 1.21183 0.74492 0.86250 0.86067 1.90620 1.49773 1.18469 1.87903 1.21496 0.98470 1.01028 0.90509 0.86542 1.21473 0.94826 1.01084 0.97173 1.21511 0.99982 0.99294 0.94029 1.21575 0.95260 1.00129 0.98920 1.21518 0.97791 1.01194 0.93522 1.20606 0.91878 0.98489 0.94741 0.92776 1.22443 0.98987 0.95361 0.98510 1.22967 1.00196 0.96632 1.01021 1.23332 1.03343 1.06237 0.92272 1.22792 0.95869 0.97554 0.81848 1.22909 0.95476 0.98641 0.84185 1.45582 1.05019 1.84328 1.02979 1.19737 0.93603 1.49129 0.81444 0.92985 1.26766 1.06080 0.99817 0.93676 1.71027 1.23711 1.43648 1.20505 0.83364 0.72861 0.77218 0.74264 1.19383 1.20276 1.22260 1.23285 0.91179 0.99729 0.88854 0.89140 0.93989 0.90756 0.87170 0.90367 0.93237 0.91544 0.90021 0.90969 0.90084 0.93058 0.89931 0.90992 0.85719 0.89764 0.87681 0.89679 0.89506 0.88444 0.94314 0.91795 0.93914 0.91186 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 9.80 71.98 0.71 -2.48 16 2 C 0.09 1.87 4.79 86.38 0.41 2.28 16 3 N -0.59 -16.38 2.73 -796.64 -2.17 -18.55 16 4 C 0.53 14.63 3.93 87.66 0.34 14.97 16 5 O -0.59 -21.43 14.14 -3.04 -0.04 -21.47 16 6 C -0.09 -1.74 1.50 -11.54 -0.02 -1.75 16 7 H 0.12 1.58 5.14 -2.39 -0.01 1.57 16 8 C -0.11 -1.83 5.18 30.59 0.16 -1.67 16 9 C -0.11 -1.21 5.92 30.59 0.18 -1.03 16 10 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 11 C -0.10 -1.16 5.20 30.59 0.16 -1.00 16 12 C -0.04 -0.67 1.77 -10.80 -0.02 -0.69 16 13 H 0.05 1.26 7.79 -2.38 -0.02 1.24 16 14 C -0.14 -2.43 3.66 -10.79 -0.04 -2.46 16 15 C -0.17 -3.43 10.18 30.60 0.31 -3.12 16 16 C -0.21 -5.40 8.33 30.60 0.25 -5.15 16 17 C 0.13 4.62 4.60 45.55 0.21 4.83 16 18 C 0.11 4.62 8.23 83.17 0.68 5.30 16 19 N -0.65 -32.65 3.68 -738.08 -2.71 -35.36 16 20 C -0.31 -18.65 10.89 84.03 0.92 -17.74 16 21 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 22 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 23 N -0.95 -61.04 13.70 21.65 0.30 -60.74 16 24 Si 1.10 54.73 25.54 68.60 1.75 56.48 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 26 H -0.28 -13.17 6.35 99.48 0.63 -12.54 16 27 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 28 C 0.09 3.95 5.78 83.26 0.48 4.43 16 29 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.04 0.96 6.78 -2.39 -0.02 0.95 16 31 H 0.07 1.18 4.68 -2.39 -0.01 1.17 16 32 H 0.11 1.48 6.23 -2.39 -0.01 1.47 16 33 H 0.08 1.76 5.95 -2.38 -0.01 1.74 16 34 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.07 0.71 8.14 -2.38 -0.02 0.70 16 38 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.13 1.72 7.42 -2.39 -0.02 1.70 16 43 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 44 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.09 2.85 4.73 -2.38 -0.01 2.84 16 47 H 0.10 4.12 7.26 -2.39 -0.02 4.10 16 48 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 49 H 0.06 2.30 7.05 -2.39 -0.02 2.28 16 50 H 0.25 16.24 8.73 -92.71 -0.81 15.43 16 51 H 0.07 2.64 5.44 -2.39 -0.01 2.62 16 52 H 0.04 1.76 4.04 -2.38 -0.01 1.75 16 Total: -1.00 -74.40 376.63 3.30 -71.10 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.79 Total: 18.61 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 5.39 Total: -10.07 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -4.59 Total: -114.66 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.04 Total: -21.47 kcal Atomic # 14 Polarization: 54.73 SS G_CDS: 1.75 Total: 56.48 kcal Total: -74.40 3.30 -71.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950975267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.954 kcal (2) G-P(sol) polarization free energy of solvation -74.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds