Wall clock time and date at job start Tue Mar 31 2020 12:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47348 * 2 1 4 4 C 1.34770 * 120.00147 * 276.11916 * 3 2 1 5 5 O 1.21283 * 120.00180 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.00023 * 0.02562 * 4 3 2 7 7 C 1.50222 * 117.30611 * 249.61104 * 6 4 3 8 8 H 1.09002 * 113.55623 * 358.90467 * 7 6 4 9 9 C 1.49040 * 129.13744 * 150.58231 * 7 6 4 10 10 C 1.54171 * 112.26887 * 134.48150 * 9 7 6 11 11 C 1.54374 * 109.16790 * 296.19859 * 10 9 7 12 12 C 1.51236 * 111.07157 * 101.00521 * 11 10 9 13 13 C 1.49155 * 120.89084 * 324.71523 * 12 11 10 14 14 C 1.54820 * 109.51500 * 277.97629 * 13 12 11 15 15 C 1.50908 * 117.30563 * 179.22223 * 6 4 3 16 16 H 1.09010 * 117.53952 * 215.55305 * 15 6 4 17 17 C 1.46503 * 119.99619 * 96.11504 * 3 2 1 18 18 C 1.53947 * 113.74051 * 42.62963 * 17 3 2 19 19 N 1.47581 * 86.11586 * 222.04277 * 18 17 3 20 20 C 1.36936 * 134.49554 * 204.64437 * 19 18 17 21 21 H 1.07999 * 120.00245 * 180.02562 * 20 19 18 22 22 C 1.38817 * 119.99871 * 359.97438 * 20 19 18 23 23 N 1.31616 * 119.99841 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00038 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47322 * 89.99836 * 24 22 20 26 26 H 1.48499 * 109.47219 * 210.00276 * 24 22 20 27 27 H 1.48504 * 109.47185 * 329.99941 * 24 22 20 28 28 C 1.47585 * 91.01639 * 24.63924 * 19 18 17 29 29 H 1.08994 * 109.47056 * 294.81687 * 1 2 3 30 30 H 1.08997 * 109.46896 * 54.82118 * 1 2 3 31 31 H 1.08999 * 109.47011 * 174.81903 * 1 2 3 32 32 H 1.09006 * 109.47041 * 119.99874 * 2 1 3 33 33 H 1.09005 * 109.47557 * 240.00176 * 2 1 3 34 34 H 1.08998 * 115.43555 * 34.41310 * 6 4 3 35 35 H 1.08998 * 108.90210 * 13.83887 * 9 7 6 36 36 H 1.09000 * 109.01498 * 255.20131 * 9 7 6 37 37 H 1.08996 * 109.52495 * 176.29020 * 10 9 7 38 38 H 1.09003 * 109.52100 * 56.10328 * 10 9 7 39 39 H 1.09004 * 109.15687 * 340.60076 * 11 10 9 40 40 H 1.09003 * 109.11994 * 221.38840 * 11 10 9 41 41 H 1.09001 * 107.13044 * 201.78759 * 12 11 10 42 42 H 1.08994 * 107.08777 * 87.60651 * 12 11 10 43 43 H 1.09000 * 109.46413 * 157.96199 * 13 12 11 44 44 H 1.09003 * 109.45810 * 37.98327 * 13 12 11 45 45 H 1.09009 * 110.85442 * 298.15940 * 14 13 12 46 46 H 1.08997 * 110.89547 * 174.71147 * 14 13 12 47 47 H 1.09002 * 112.94140 * 174.35263 * 17 3 2 48 48 H 1.09001 * 113.77037 * 336.34065 * 18 17 3 49 49 H 1.08998 * 113.77052 * 107.74176 * 18 17 3 50 50 H 0.96997 * 120.00022 * 179.97438 * 23 22 20 51 51 H 1.08998 * 113.77069 * 221.06130 * 28 19 18 52 52 H 1.08992 * 113.87159 * 89.67074 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1258 2.0580 -1.1605 5 8 2.5296 3.2016 -1.1604 6 6 1.7429 1.3942 -2.4581 7 6 2.8515 1.0634 -3.4164 8 1 3.8373 1.3663 -3.0633 9 6 2.9325 -0.0380 -4.4171 10 6 3.4466 0.4524 -5.7854 11 6 2.4364 1.4600 -6.3749 12 6 2.9082 2.8829 -6.1754 13 6 3.6526 3.2774 -4.9446 14 6 2.6487 3.5470 -3.7972 15 6 1.8699 2.2138 -3.7188 16 1 1.1248 2.0574 -4.4990 17 6 2.3900 2.0267 1.2616 18 6 3.1946 1.1184 2.2090 19 7 2.3546 1.6708 3.2895 20 6 2.5095 1.8268 4.6411 21 1 1.7202 2.2740 5.2270 22 6 3.6807 1.4091 5.2582 23 7 4.6424 0.8636 4.5442 24 14 3.8917 1.6212 7.1021 25 1 3.3858 0.4123 7.8006 26 1 5.3306 1.8092 7.4172 27 1 3.1264 2.8108 7.5543 28 6 1.2806 1.9878 2.3282 29 1 -0.3633 0.4313 0.9327 30 1 -0.3633 0.5921 -0.8400 31 1 -0.3633 -1.0235 -0.0928 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.9087 0.6952 -2.3981 35 1 1.9405 -0.4703 -4.5475 36 1 3.6062 -0.8089 -4.0430 37 1 3.5507 -0.3965 -6.4610 38 1 4.4138 0.9387 -5.6581 39 1 1.4728 1.3303 -5.8821 40 1 2.3213 1.2675 -7.4416 41 1 2.0293 3.5245 -6.2386 42 1 3.5407 3.1330 -7.0271 43 1 4.2290 4.1811 -5.1427 44 1 4.3277 2.4722 -4.6547 45 1 1.9822 4.3716 -4.0504 46 1 3.1717 3.7466 -2.8619 47 1 2.8286 3.0145 1.1204 48 1 3.0403 0.0538 2.0333 49 1 4.2473 1.3895 2.2888 50 1 5.4609 0.5721 4.9754 51 1 0.8052 2.9529 2.5030 52 1 0.5630 1.1797 2.1863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952347869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:34 Heat of formation + Delta-G solvation = 49.605566 kcal Electronic energy + Delta-G solvation = -28610.505849 eV Core-core repulsion = 24998.832892 eV Total energy + Delta-G solvation = -3611.672956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88019 -39.18309 -37.43779 -35.05189 -34.77996 -33.20905 -32.05431 -30.18955 -28.71621 -27.48391 -26.07661 -24.97945 -24.59702 -23.32080 -22.57566 -21.31438 -20.77546 -19.42658 -19.21156 -18.34415 -17.25498 -16.68802 -16.09704 -15.42213 -15.16925 -14.91257 -14.73588 -14.46704 -14.12368 -13.82862 -13.74450 -13.54886 -13.47205 -12.87631 -12.78891 -12.60864 -12.31280 -12.22716 -12.02432 -11.73152 -11.63423 -11.44581 -11.35456 -11.15093 -11.07871 -10.94955 -10.83881 -10.70266 -10.62596 -10.53959 -10.30122 -10.21725 -10.05151 -9.86323 -9.55287 -9.49410 -9.00114 -8.79559 -8.11042 -6.90555 -5.79142 -3.11794 2.68095 3.27646 3.39314 3.44065 3.45811 3.75086 4.38937 4.46929 4.58907 4.64613 4.75350 4.80575 4.87341 5.03249 5.06685 5.12108 5.15838 5.22813 5.32108 5.33024 5.44085 5.47740 5.50655 5.55412 5.63882 5.69411 5.72241 5.77954 5.82440 5.86559 5.88855 5.91859 5.95997 6.01007 6.02810 6.08755 6.10908 6.20358 6.22976 6.25990 6.35608 6.41026 6.52775 6.63336 6.65587 6.87157 7.20699 7.36945 7.52589 7.84985 7.95216 8.55436 9.02101 9.68094 10.55584 11.37971 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.002812 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.703475 B = 9955.764664 C =10168.934945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 N -0.591 5.591 4 C 0.542 3.458 5 O -0.538 6.538 6 C -0.149 4.149 7 C -0.145 4.145 8 H 0.096 0.904 9 C -0.082 4.082 10 C -0.114 4.114 11 C -0.117 4.117 12 C -0.115 4.115 13 C -0.118 4.118 14 C -0.100 4.100 15 C -0.128 4.128 16 H 0.114 0.886 17 C 0.091 3.909 18 C 0.156 3.844 19 N -0.605 5.605 20 C -0.222 4.222 21 H 0.081 0.919 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.105 3.895 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.031 0.969 49 H 0.076 0.924 50 H 0.254 0.746 51 H 0.044 0.956 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.890 -2.549 -22.457 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.024 4.024 3 N -0.322 5.322 4 C 0.330 3.670 5 O -0.416 6.416 6 C -0.170 4.170 7 C -0.164 4.164 8 H 0.114 0.886 9 C -0.119 4.119 10 C -0.152 4.152 11 C -0.154 4.154 12 C -0.153 4.153 13 C -0.156 4.156 14 C -0.137 4.137 15 C -0.146 4.146 16 H 0.131 0.869 17 C -0.013 4.013 18 C 0.030 3.970 19 N -0.332 5.332 20 C -0.350 4.350 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.022 4.022 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.124 0.876 47 H 0.133 0.867 48 H 0.049 0.951 49 H 0.094 0.906 50 H 0.064 0.936 51 H 0.062 0.938 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.470 -1.954 -22.145 22.894 hybrid contribution -0.059 -0.283 1.079 1.117 sum -5.530 -2.236 -21.066 21.894 Atomic orbital electron populations 1.22374 0.96205 1.01856 1.02833 1.21599 0.94139 0.83024 1.03597 1.48120 1.63638 1.13662 1.06787 1.19711 0.77285 0.85842 0.84210 1.90560 1.46904 1.17864 1.86321 1.21729 1.01868 1.03120 0.90296 1.21117 0.95336 1.00113 0.99801 0.88622 1.20423 1.01438 0.96423 0.93641 1.21982 0.99400 0.98487 0.95296 1.21626 0.99334 0.94418 1.00001 1.20373 1.00306 0.96525 0.98101 1.21321 0.98253 1.00954 0.95044 1.22321 0.96999 0.93996 1.00336 1.22895 1.00745 0.94655 0.96354 0.86863 1.24001 0.98279 0.99154 0.79850 1.22648 0.97381 0.94044 0.82957 1.45653 1.14196 1.70392 1.02939 1.18990 1.00811 1.34460 0.80738 0.90094 1.24799 0.96505 1.00854 0.98205 1.69814 1.06799 1.45870 1.34216 0.86096 0.77090 0.77769 0.84661 1.21600 1.21582 1.20565 1.23115 0.92662 0.98180 0.88263 0.91424 0.92742 0.91852 0.88981 0.90924 0.86279 0.92321 0.91836 0.91920 0.91391 0.91597 0.92428 0.93059 0.93756 0.92316 0.91390 0.92085 0.87590 0.86682 0.95110 0.90570 0.93572 0.93751 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.78 37.16 0.36 -1.63 16 2 C 0.10 1.32 5.11 -4.04 -0.02 1.30 16 3 N -0.59 -9.59 2.71 -167.89 -0.46 -10.04 16 4 C 0.54 8.64 7.32 -10.99 -0.08 8.56 16 5 O -0.54 -10.22 12.98 5.56 0.07 -10.15 16 6 C -0.15 -1.78 4.51 -94.20 -0.42 -2.20 16 7 C -0.14 -1.54 3.58 -93.31 -0.33 -1.87 16 8 H 0.10 1.20 7.15 -51.93 -0.37 0.83 16 9 C -0.08 -0.69 5.52 -28.06 -0.15 -0.84 16 10 C -0.11 -0.87 5.68 -25.40 -0.14 -1.01 16 11 C -0.12 -0.87 5.38 -26.90 -0.14 -1.02 16 12 C -0.12 -0.97 4.44 -29.51 -0.13 -1.10 16 13 C -0.12 -1.17 5.43 -27.66 -0.15 -1.32 16 14 C -0.10 -1.19 5.58 -24.93 -0.14 -1.33 16 15 C -0.13 -1.40 4.39 -90.19 -0.40 -1.79 16 16 H 0.11 1.08 5.51 -51.92 -0.29 0.79 16 17 C 0.09 1.82 4.43 -70.14 -0.31 1.51 16 18 C 0.16 3.66 6.99 -2.97 -0.02 3.64 16 19 N -0.61 -15.59 3.70 -178.09 -0.66 -16.24 16 20 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -27.24 11.38 55.49 0.63 -26.61 16 24 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.10 2.18 8.50 -2.97 -0.03 2.16 16 29 H 0.07 0.88 5.84 -51.93 -0.30 0.58 16 30 H 0.05 0.58 6.87 -51.93 -0.36 0.23 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.38 5.76 -51.93 -0.30 1.08 16 33 H 0.07 0.81 7.00 -51.93 -0.36 0.45 16 34 H 0.12 1.22 6.02 -51.93 -0.31 0.91 16 35 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.55 6.32 -51.93 -0.33 0.23 16 39 H 0.07 0.50 5.23 -51.93 -0.27 0.23 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.43 7.84 -51.93 -0.41 0.03 16 42 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.70 4.57 -51.93 -0.24 0.46 16 45 H 0.06 0.71 8.13 -51.92 -0.42 0.29 16 46 H 0.11 1.61 5.27 -51.93 -0.27 1.33 16 47 H 0.12 2.53 7.18 -51.93 -0.37 2.16 16 48 H 0.03 0.72 5.98 -51.93 -0.31 0.40 16 49 H 0.08 2.03 7.15 -51.93 -0.37 1.65 16 50 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 51 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 52 H 0.04 0.79 5.20 -51.93 -0.27 0.52 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -31.02 372.69 -10.67 -41.69 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.48 Total: 2.25 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.37 Total: -3.67 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.48 Total: -52.90 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.02 -10.67 -41.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952347869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.295 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds