Wall clock time and date at job start Tue Mar 31 2020 12:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46490 * 109.47162 * 2 1 4 4 C 1.34779 * 120.00340 * 270.00219 * 3 2 1 5 5 O 1.21276 * 120.00604 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.99675 * 359.97438 * 4 3 2 7 7 C 1.54889 * 129.08841 * 299.94403 * 6 4 3 8 8 C 1.57177 * 77.91693 * 180.16255 * 7 6 4 9 9 C 1.52995 * 129.25158 * 179.19589 * 8 7 6 10 10 C 1.53004 * 109.47103 * 301.28094 * 9 8 7 11 11 C 1.52998 * 109.47170 * 61.28191 * 9 8 7 12 12 C 1.52998 * 109.47073 * 181.28456 * 9 8 7 13 13 C 1.54406 * 129.01476 * 180.02562 * 6 4 3 14 14 C 1.54890 * 83.77018 * 317.35392 * 8 7 6 15 15 C 1.46500 * 120.00283 * 89.99736 * 3 2 1 16 16 C 1.53498 * 114.20659 * 300.00427 * 15 3 2 17 17 N 1.47066 * 87.98609 * 87.51770 * 16 15 3 18 18 C 1.36938 * 136.05354 * 207.08958 * 17 16 15 19 19 H 1.07998 * 120.00343 * 8.65538 * 18 17 16 20 20 C 1.38821 * 119.99842 * 188.66067 * 18 17 16 21 21 N 1.31624 * 119.99860 * 18.58291 * 20 18 17 22 22 Si 1.86794 * 120.00091 * 198.58752 * 20 18 17 23 23 H 1.48498 * 109.47264 * 89.99725 * 22 20 18 24 24 H 1.48500 * 109.47079 * 329.99531 * 22 20 18 25 25 H 1.48501 * 109.47020 * 209.99846 * 22 20 18 26 26 C 1.47060 * 87.88751 * 27.34011 * 17 16 15 27 27 H 1.09001 * 109.46797 * 299.99749 * 1 2 3 28 28 H 1.08995 * 109.46991 * 60.00331 * 1 2 3 29 29 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46844 * 239.99710 * 2 1 3 31 31 H 1.09001 * 109.46723 * 120.00332 * 2 1 3 32 32 H 1.09007 * 114.97710 * 291.94924 * 7 6 4 33 33 H 1.08998 * 114.98181 * 67.13134 * 7 6 4 34 34 H 1.09001 * 109.46828 * 59.99909 * 10 9 8 35 35 H 1.09003 * 109.47272 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47052 * 300.00323 * 10 9 8 37 37 H 1.08999 * 109.47296 * 60.00420 * 11 9 8 38 38 H 1.09003 * 109.47165 * 180.02562 * 11 9 8 39 39 H 1.08999 * 109.47470 * 299.99926 * 11 9 8 40 40 H 1.08998 * 109.47447 * 59.99964 * 12 9 8 41 41 H 1.09002 * 109.47286 * 180.02562 * 12 9 8 42 42 H 1.09000 * 109.47042 * 299.99984 * 12 9 8 43 43 H 1.08999 * 114.93535 * 293.13385 * 13 6 4 44 44 H 1.09001 * 114.93242 * 68.09729 * 13 6 4 45 45 H 1.09003 * 116.12375 * 290.12457 * 14 8 7 46 46 H 1.09000 * 113.83462 * 154.96061 * 14 8 7 47 47 H 1.08995 * 113.28388 * 166.93506 * 15 3 2 48 48 H 1.08996 * 113.46807 * 332.73027 * 16 15 3 49 49 H 1.09000 * 113.46261 * 202.29581 * 16 15 3 50 50 H 0.97002 * 119.99784 * 5.69269 * 21 20 18 51 51 H 1.09005 * 113.46930 * 87.43828 * 26 17 16 52 52 H 1.08998 * 113.47482 * 217.87730 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6477 3.1598 -1.1672 6 6 1.9923 1.3060 -2.4723 7 6 2.6391 0.0086 -3.0178 8 6 1.6541 0.3986 -4.1790 9 6 1.4065 -0.3040 -5.5153 10 6 2.7161 -0.3783 -6.3029 11 6 0.8848 -1.7191 -5.2585 12 6 0.3709 0.4830 -6.3210 13 6 2.1772 1.8271 -3.9139 14 6 0.6744 0.7024 -3.0184 15 6 2.2625 2.0718 1.2687 16 6 1.0222 2.2011 2.1638 17 7 1.3544 0.8832 2.7258 18 6 0.6596 -0.1463 3.3023 19 1 -0.4204 -0.1384 3.2977 20 6 1.3434 -1.2003 3.8927 21 7 2.6078 -1.0581 4.2296 22 14 0.4691 -2.8205 4.2089 23 1 0.6260 -3.7065 3.0276 24 1 -0.9741 -2.5657 4.4485 25 1 1.0605 -3.4773 5.4023 26 6 2.7619 1.1604 2.4020 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.6961 0.0923 -3.2705 33 1 2.3878 -0.8978 -2.4671 34 1 3.4539 -0.9388 -5.7288 35 1 2.5398 -0.8792 -7.2548 36 1 3.0878 0.6300 -6.4858 37 1 -0.0482 -1.6662 -4.6975 38 1 0.7088 -2.2199 -6.2105 39 1 1.6226 -2.2798 -4.6845 40 1 0.7425 1.4912 -6.5040 41 1 0.1941 -0.0178 -7.2729 42 1 -0.5621 0.5360 -5.7599 43 1 1.4961 2.6270 -4.2043 44 1 3.2116 2.0011 -4.2105 45 1 0.3005 -0.1607 -2.4675 46 1 -0.0955 1.4313 -3.2713 47 1 2.8292 2.9958 1.1541 48 1 0.0849 2.2121 1.6077 49 1 1.0926 3.0122 2.8884 50 1 3.0387 -0.1934 4.1421 51 1 3.2909 1.6973 3.1894 52 1 3.3067 0.2849 2.0488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957439239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:23 Heat of formation + Delta-G solvation = 106.613546 kcal Electronic energy + Delta-G solvation = -29326.572060 eV Core-core repulsion = 25717.371155 eV Total energy + Delta-G solvation = -3609.200905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.34294 -41.24555 -39.24690 -36.82992 -36.12068 -34.32743 -31.52807 -29.28638 -28.29010 -28.26791 -27.00188 -26.79701 -26.46218 -26.35399 -24.90764 -23.94243 -22.60551 -20.68540 -19.67559 -19.22326 -18.57918 -18.01851 -17.27162 -16.41093 -16.18509 -15.82025 -15.74582 -15.39090 -15.32612 -15.24580 -14.94723 -14.92438 -14.82146 -14.25104 -14.16639 -13.84017 -13.24055 -13.15565 -13.09895 -13.07079 -12.66282 -12.58415 -12.50796 -12.36692 -12.27344 -12.16561 -12.15413 -11.90089 -11.89421 -11.75544 -11.72427 -11.68316 -11.44513 -11.32543 -10.96391 -10.93351 -10.77009 -10.58879 -9.66110 -9.06343 -8.30140 -5.28373 1.37040 1.59293 1.67375 1.82536 1.84843 2.62244 3.16657 3.18706 3.26825 3.31612 3.33112 3.45669 3.50383 3.54292 3.66479 3.91878 4.08317 4.24580 4.26299 4.28470 4.34653 4.47967 4.53796 4.57805 4.60666 4.61882 4.68604 4.71446 4.76145 4.80233 4.84654 4.85871 4.88605 4.93412 4.95410 4.97738 5.01681 5.03255 5.15169 5.15672 5.21863 5.24318 5.29017 5.30066 5.50822 5.51923 5.57034 5.57617 5.62834 6.17174 6.45486 6.73671 7.08336 7.64900 8.46153 9.12787 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.003861 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.385966 B = 7249.515480 C = 8270.208401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.114 3.886 3 N -0.569 5.569 4 C 0.569 3.431 5 O -0.583 6.583 6 C -0.183 4.183 7 C -0.101 4.101 8 C -0.075 4.075 9 C -0.003 4.003 10 C -0.140 4.140 11 C -0.141 4.141 12 C -0.140 4.140 13 C -0.087 4.087 14 C -0.094 4.094 15 C 0.110 3.890 16 C 0.107 3.893 17 N -0.624 5.624 18 C -0.297 4.297 19 H 0.072 0.928 20 C -0.084 4.084 21 N -0.968 5.968 22 Si 1.118 2.882 23 H -0.279 1.279 24 H -0.273 1.273 25 H -0.301 1.301 26 C 0.128 3.872 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.253 0.747 51 H 0.038 0.962 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 -0.411 -23.036 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.008 4.008 3 N -0.298 5.298 4 C 0.359 3.641 5 O -0.463 6.463 6 C -0.186 4.186 7 C -0.138 4.138 8 C -0.075 4.075 9 C -0.003 4.003 10 C -0.197 4.197 11 C -0.198 4.198 12 C -0.197 4.197 13 C -0.125 4.125 14 C -0.131 4.131 15 C 0.004 3.996 16 C -0.019 4.019 17 N -0.352 5.352 18 C -0.425 4.425 19 H 0.090 0.910 20 C -0.277 4.277 21 N -0.614 5.614 22 Si 0.943 3.057 23 H -0.205 1.205 24 H -0.198 1.198 25 H -0.228 1.228 26 C 0.001 3.999 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.124 0.876 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.056 0.944 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.790 -1.578 -22.369 22.742 hybrid contribution 0.182 2.068 0.756 2.209 sum -3.608 0.489 -21.612 21.917 Atomic orbital electron populations 1.22173 0.94988 1.02418 1.01679 1.21659 0.95629 0.80819 1.02722 1.47463 1.63581 1.14798 1.03976 1.19303 0.75850 0.85065 0.83931 1.90619 1.48391 1.19439 1.87878 1.23761 1.02949 0.99730 0.92184 1.24688 0.99304 0.94230 0.95622 1.24274 0.95047 0.94669 0.93497 1.19595 0.96492 0.94788 0.89441 1.21835 0.95867 1.02022 1.00016 1.21843 1.01092 0.94586 1.02321 1.21828 0.98043 0.99919 0.99898 1.23777 1.01395 0.97024 0.90284 1.24251 0.93737 1.00040 0.95086 1.22309 0.98110 0.95761 0.83432 1.22949 0.97017 0.88268 0.93657 1.46152 1.03458 1.14149 1.71430 1.19937 0.91045 0.98562 1.32946 0.91020 1.26971 0.97462 1.05824 0.97482 1.70855 1.13791 1.26760 1.49960 0.82778 0.74164 0.72409 0.76352 1.20545 1.19768 1.22774 1.22566 0.88655 0.95587 0.93078 0.93336 0.91706 0.91250 0.89208 0.91613 0.90443 0.89666 0.92753 0.91068 0.92723 0.92520 0.91134 0.92714 0.92724 0.91073 0.92610 0.90756 0.90814 0.89098 0.90510 0.87596 0.92909 0.93462 0.93643 0.94402 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.11 71.98 0.66 -4.27 16 2 C 0.11 3.92 4.92 86.38 0.43 4.34 16 3 N -0.57 -20.63 2.73 -796.65 -2.17 -22.80 16 4 C 0.57 20.00 7.78 87.66 0.68 20.68 16 5 O -0.58 -24.10 16.61 -3.02 -0.05 -24.15 16 6 C -0.18 -4.82 2.44 -63.68 -0.16 -4.98 16 7 C -0.10 -2.16 7.27 31.89 0.23 -1.93 16 8 C -0.07 -1.31 1.67 -62.11 -0.10 -1.42 16 9 C 0.00 -0.04 1.02 -52.18 -0.05 -0.10 16 10 C -0.14 -1.71 8.47 71.98 0.61 -1.10 16 11 C -0.14 -1.75 8.47 71.98 0.61 -1.14 16 12 C -0.14 -1.66 8.47 71.98 0.61 -1.05 16 13 C -0.09 -1.91 7.78 30.60 0.24 -1.67 16 14 C -0.09 -1.95 6.08 31.09 0.19 -1.76 16 15 C 0.11 4.34 4.69 45.55 0.21 4.55 16 16 C 0.11 4.43 7.65 83.18 0.64 5.07 16 17 N -0.62 -30.17 1.97 -738.00 -1.45 -31.62 16 18 C -0.30 -15.76 9.49 84.04 0.80 -14.96 16 19 H 0.07 3.76 7.90 -2.91 -0.02 3.74 16 20 C -0.08 -4.62 5.45 84.86 0.46 -4.16 16 21 N -0.97 -58.52 13.34 21.66 0.29 -58.24 16 22 Si 1.12 49.46 29.96 68.60 2.06 51.52 16 23 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 C 0.13 5.86 5.18 83.27 0.43 6.29 16 27 H 0.05 1.83 4.78 -2.39 -0.01 1.82 16 28 H 0.06 1.76 5.57 -2.39 -0.01 1.75 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 2.62 4.06 -2.39 -0.01 2.61 16 31 H 0.07 2.85 5.38 -2.39 -0.01 2.84 16 32 H 0.08 1.63 7.91 -2.38 -0.02 1.62 16 33 H 0.09 1.78 6.15 -2.39 -0.01 1.77 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 1.62 7.95 -2.39 -0.02 1.60 16 44 H 0.07 1.62 7.91 -2.39 -0.02 1.60 16 45 H 0.09 1.84 5.67 -2.39 -0.01 1.82 16 46 H 0.08 1.55 7.93 -2.39 -0.02 1.53 16 47 H 0.11 4.11 7.29 -2.39 -0.02 4.10 16 48 H 0.05 2.12 6.67 -2.39 -0.02 2.11 16 49 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.25 15.45 5.93 -92.71 -0.55 14.90 16 51 H 0.04 1.78 7.98 -2.38 -0.02 1.76 16 52 H 0.03 1.71 7.09 -2.39 -0.02 1.69 16 Total: -1.00 -66.24 387.60 6.27 -59.98 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 1.11 Total: 22.91 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 6.48 Total: 2.41 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -3.33 Total: -112.66 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.06 Total: 51.52 kcal Total: -66.24 6.27 -59.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957439239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.591 kcal (2) G-P(sol) polarization free energy of solvation -66.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds