Wall clock time and date at job start Tue Mar 31 2020 12:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34774 * 120.00184 * 2 1 4 4 O 1.21282 * 119.99899 * 174.95749 * 3 2 1 5 5 C 1.50696 * 119.99843 * 354.95150 * 3 2 1 6 6 H 1.08994 * 110.05656 * 336.50928 * 5 3 2 7 7 C 1.54386 * 110.07033 * 98.05756 * 5 3 2 8 8 C 1.54927 * 104.21953 * 142.79584 * 7 5 3 9 9 C 1.54987 * 102.82179 * 322.27242 * 8 7 5 10 10 C 1.53488 * 110.06986 * 215.02658 * 5 3 2 11 11 C 1.52569 * 121.05406 * 96.54303 * 10 5 3 12 12 C 1.52554 * 121.08692 * 24.82964 * 10 5 3 13 13 C 1.46501 * 119.99805 * 179.97438 * 2 1 3 14 14 C 1.53004 * 109.46977 * 299.99757 * 13 2 1 15 15 C 1.53004 * 109.46868 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.47203 * 300.00045 * 15 14 13 17 17 N 1.46501 * 109.47098 * 180.02562 * 16 15 14 18 18 C 1.36932 * 119.99909 * 155.00436 * 17 16 15 19 19 H 1.08000 * 120.00399 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99640 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00019 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99708 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47070 * 89.99907 * 22 20 18 24 24 H 1.48501 * 109.46831 * 209.99797 * 22 20 18 25 25 H 1.48496 * 109.46880 * 329.99633 * 22 20 18 26 26 C 1.52995 * 109.47184 * 60.00069 * 16 15 14 27 27 C 1.52993 * 109.47389 * 60.00121 * 13 2 1 28 28 H 1.09001 * 109.46832 * 275.40048 * 1 2 3 29 29 H 1.08996 * 109.47221 * 35.39706 * 1 2 3 30 30 H 1.08998 * 109.47410 * 155.40181 * 1 2 3 31 31 H 1.08994 * 110.48293 * 261.48105 * 7 5 3 32 32 H 1.09001 * 110.47909 * 24.11426 * 7 5 3 33 33 H 1.09007 * 110.74305 * 203.93730 * 8 7 5 34 34 H 1.09005 * 110.74404 * 80.61117 * 8 7 5 35 35 H 1.09001 * 110.51255 * 278.92400 * 9 8 7 36 36 H 1.09001 * 110.51037 * 156.21733 * 9 8 7 37 37 H 1.08999 * 117.51051 * 356.98021 * 11 10 5 38 38 H 1.09002 * 117.50479 * 142.06673 * 11 10 5 39 39 H 1.08999 * 117.51176 * 217.89051 * 12 10 5 40 40 H 1.08999 * 117.50691 * 2.97252 * 12 10 5 41 41 H 1.09009 * 109.47220 * 180.02562 * 13 2 1 42 42 H 1.08997 * 109.47294 * 60.00259 * 14 13 2 43 43 H 1.09004 * 109.47312 * 299.99969 * 14 13 2 44 44 H 1.08997 * 109.47095 * 59.99961 * 15 14 13 45 45 H 1.09005 * 109.46635 * 180.02562 * 15 14 13 46 46 H 1.09001 * 109.46790 * 300.00414 * 16 15 14 47 47 H 0.96999 * 119.99921 * 334.99168 * 17 16 15 48 48 H 0.97004 * 119.99627 * 180.02562 * 21 20 18 49 49 H 1.09006 * 109.47084 * 59.99720 * 26 16 15 50 50 H 1.08996 * 109.47408 * 179.97438 * 26 16 15 51 51 H 1.08995 * 109.47688 * 59.99757 * 27 13 2 52 52 H 1.09006 * 109.47129 * 299.99688 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3481 1.1691 0.0923 5 6 1.3898 2.4697 -0.1148 6 1 0.4234 2.3044 -0.5912 7 6 1.1927 3.0926 1.2839 8 6 1.3537 4.6154 1.0485 9 6 2.4864 4.6823 -0.0073 10 6 2.2114 3.4800 -0.9273 11 6 1.9616 3.6791 -2.4192 12 6 3.2545 3.0150 -1.9387 13 6 2.1974 -1.2688 0.0006 14 6 1.8278 -2.0705 1.2502 15 6 2.5932 -3.3952 1.2511 16 6 2.2241 -4.1984 0.0023 17 7 2.9566 -5.4671 0.0034 18 6 2.4580 -6.5462 -0.6763 19 1 1.5246 -6.4621 -1.2130 20 6 3.1524 -7.7482 -0.6756 21 7 4.2902 -7.8505 -0.0220 22 14 2.4718 -9.2205 -1.6023 23 1 2.9866 -9.2097 -2.9952 24 1 2.8993 -10.4716 -0.9262 25 1 0.9886 -9.1504 -1.6221 26 6 2.5937 -3.3967 -1.2473 27 6 1.8278 -2.0716 -1.2483 28 1 -0.3633 0.0967 1.0231 29 1 -0.3633 0.8377 -0.5952 30 1 -0.3634 -0.9344 -0.4278 31 1 0.1960 2.8688 1.6642 32 1 1.9552 2.7306 1.9735 33 1 1.6527 5.1188 1.9680 34 1 0.4325 5.0447 0.6543 35 1 3.4607 4.5824 0.4710 36 1 2.4297 5.6144 -0.5696 37 1 1.2149 3.0426 -2.8940 38 1 2.0323 4.6940 -2.8103 39 1 4.1756 3.5930 -2.0139 40 1 3.3583 1.9416 -2.0975 41 1 3.2691 -1.0696 0.0009 42 1 0.7561 -2.2696 1.2504 43 1 2.0911 -1.4985 2.1400 44 1 3.6648 -3.1957 1.2512 45 1 2.3295 -3.9666 2.1412 46 1 1.1525 -4.3978 0.0022 47 1 3.7949 -5.5427 0.4856 48 1 4.7756 -8.6904 -0.0218 49 1 3.6654 -3.1971 -1.2472 50 1 2.3312 -3.9690 -2.1370 51 1 2.0911 -1.5005 -2.1385 52 1 0.7561 -2.2708 -1.2482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963536376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:03 Heat of formation + Delta-G solvation = -15.799077 kcal Electronic energy + Delta-G solvation = -28158.670332 eV Core-core repulsion = 24544.161218 eV Total energy + Delta-G solvation = -3614.509114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85785 -38.97660 -37.45858 -35.42251 -34.45548 -33.38775 -31.02298 -30.39201 -29.54878 -27.67430 -26.73446 -25.95998 -23.67981 -22.62132 -22.26483 -21.86146 -21.01634 -19.83930 -19.29204 -18.33296 -17.39851 -16.96263 -16.29283 -15.74286 -15.48976 -15.19707 -14.90091 -14.50835 -14.05463 -13.83050 -13.57140 -13.53214 -13.43822 -12.92295 -12.86143 -12.72335 -12.67012 -12.41429 -12.06867 -11.80599 -11.74538 -11.59134 -11.41378 -11.37924 -11.15931 -10.96893 -10.88477 -10.74839 -10.69217 -10.63179 -10.44574 -10.16725 -10.10193 -10.01522 -9.70778 -9.63837 -9.42001 -8.85927 -8.56687 -6.92880 -5.74253 -3.02730 2.58392 2.89696 3.44218 3.49097 3.50950 3.60366 4.03273 4.33790 4.46299 4.60355 4.61597 4.69759 4.85508 4.88741 4.92504 5.00223 5.06081 5.10862 5.28189 5.32179 5.36297 5.42800 5.49144 5.50438 5.51896 5.54627 5.58522 5.62490 5.67838 5.69327 5.76626 5.78862 5.84902 5.88232 5.90385 5.91360 5.99400 6.04896 6.07401 6.28541 6.31022 6.35014 6.46259 6.59665 6.69432 6.72481 6.99905 7.15022 7.38204 7.71556 8.18625 8.44587 9.55414 10.14536 10.49073 11.48545 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.002474 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.467538 B =11314.226071 C =11537.610995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.611 5.611 3 C 0.518 3.482 4 O -0.531 6.531 5 C -0.080 4.080 6 H 0.094 0.906 7 C -0.107 4.107 8 C -0.119 4.119 9 C -0.086 4.086 10 C -0.115 4.115 11 C -0.174 4.174 12 C -0.150 4.150 13 C 0.139 3.861 14 C -0.117 4.117 15 C -0.121 4.121 16 C 0.179 3.821 17 N -0.726 5.726 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.132 4.132 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.045 0.955 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.056 0.944 50 H 0.064 0.936 51 H 0.054 0.946 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 26.839 0.486 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.344 5.344 3 C 0.306 3.694 4 O -0.407 6.407 5 C -0.101 4.101 6 H 0.112 0.888 7 C -0.145 4.145 8 C -0.157 4.157 9 C -0.124 4.124 10 C -0.115 4.115 11 C -0.211 4.211 12 C -0.187 4.187 13 C 0.037 3.963 14 C -0.156 4.156 15 C -0.160 4.160 16 C 0.069 3.931 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.173 4.173 27 C -0.160 4.160 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.073 0.927 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.148 26.677 0.459 28.205 hybrid contribution -0.182 -1.024 -0.488 1.149 sum -9.330 25.653 -0.029 27.297 Atomic orbital electron populations 1.21832 0.80156 1.03331 1.01718 1.48049 1.06825 1.06166 1.73329 1.20524 0.88020 0.84919 0.75947 1.90691 1.14077 1.87013 1.48939 1.21510 0.98922 0.91959 0.97754 0.88843 1.22265 1.02172 0.95550 0.94507 1.22454 0.98790 0.95513 0.98937 1.21869 0.99056 0.95663 0.95773 1.21428 1.02690 0.97330 0.90087 1.23091 1.00736 1.02062 0.95208 1.22895 0.92946 1.01387 1.01432 1.21233 0.97914 0.81637 0.95516 1.21790 1.00617 0.96384 0.96821 1.21773 1.00059 0.94498 0.99709 1.20213 0.95663 0.86205 0.91041 1.42440 1.26080 1.06554 1.61504 1.19234 1.04078 0.89471 1.24004 0.91262 1.24744 0.97320 0.97980 1.01043 1.69663 1.16104 1.25794 1.46599 0.86214 0.78087 0.82725 0.79322 1.21778 1.21811 1.20818 1.22240 0.99626 0.93832 1.01612 1.21877 1.00676 0.97066 0.96401 0.92568 0.91376 0.90322 0.90908 0.90876 0.91150 0.91201 0.90878 0.91553 0.89011 0.88721 0.88806 0.88479 0.88257 0.91953 0.92320 0.92057 0.91559 0.93699 0.78292 0.93547 0.92486 0.91739 0.92706 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 9.25 59.84 0.55 1.15 16 2 N -0.61 -7.13 2.76 -173.94 -0.48 -7.61 16 3 C 0.52 6.55 5.80 -10.99 -0.06 6.48 16 4 O -0.53 -8.70 14.23 5.56 0.08 -8.62 16 5 C -0.08 -0.75 2.65 -90.79 -0.24 -0.99 16 6 H 0.09 0.72 5.80 -51.93 -0.30 0.42 16 7 C -0.11 -0.86 6.36 -24.99 -0.16 -1.02 16 8 C -0.12 -0.82 6.91 -24.66 -0.17 -0.99 16 9 C -0.09 -0.70 6.58 -25.23 -0.17 -0.87 16 10 C -0.11 -1.09 2.06 -154.25 -0.32 -1.41 16 11 C -0.17 -1.47 10.23 -26.91 -0.28 -1.75 16 12 C -0.15 -1.61 8.93 -26.91 -0.24 -1.85 16 13 C 0.14 1.93 2.51 -67.93 -0.17 1.76 16 14 C -0.12 -1.61 5.20 -26.73 -0.14 -1.75 16 15 C -0.12 -2.04 5.39 -26.73 -0.14 -2.18 16 16 C 0.18 3.51 2.77 -67.93 -0.19 3.32 16 17 N -0.73 -18.26 5.12 -53.43 -0.27 -18.54 16 18 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 22 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C -0.13 -2.37 5.50 -26.71 -0.15 -2.52 16 27 C -0.12 -1.72 5.20 -26.71 -0.14 -1.86 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.43 5.88 -51.93 -0.31 0.13 16 30 H 0.08 0.64 6.44 -51.93 -0.33 0.31 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.71 7.85 -51.93 -0.41 0.31 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 1.26 6.79 -51.93 -0.35 0.91 16 41 H 0.10 1.63 6.91 -51.92 -0.36 1.27 16 42 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 47 H 0.38 10.33 7.80 -40.82 -0.32 10.02 16 48 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.06 0.79 6.67 -51.93 -0.35 0.44 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -31.92 394.95 -10.70 -42.63 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -9.43 Total: 8.15 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.25 Total: -11.71 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.03 Total: -53.87 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.92 -10.70 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963536376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.828 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds