Wall clock time and date at job start Tue Mar 31 2020 12:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51269 * 120.84954 * 2 1 4 4 C 1.53228 * 108.54267 * 128.92384 * 3 2 1 5 5 C 1.52959 * 109.40240 * 54.62216 * 4 3 2 6 6 C 1.50698 * 109.41226 * 176.29639 * 5 4 3 7 7 O 1.21286 * 119.99969 * 120.35614 * 6 5 4 8 8 N 1.34769 * 120.00366 * 300.35617 * 6 5 4 9 9 C 1.46508 * 119.99683 * 359.97438 * 8 6 5 10 10 C 1.46494 * 120.00311 * 179.97438 * 8 6 5 11 11 C 1.53000 * 109.47289 * 305.77984 * 10 8 6 12 12 C 1.52998 * 109.47058 * 300.00214 * 11 10 8 13 13 C 1.53002 * 109.46862 * 299.99542 * 12 11 10 14 14 N 1.46505 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.36939 * 119.99698 * 84.99909 * 14 13 12 16 16 H 1.07999 * 120.00482 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99546 * 180.02562 * 15 14 13 18 18 N 1.31610 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99512 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47622 * 60.00023 * 19 17 15 21 21 H 1.48511 * 109.46836 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47170 * 299.99676 * 19 17 15 23 23 C 1.52995 * 109.47234 * 60.00395 * 13 12 11 24 24 C 1.53002 * 109.47368 * 185.77990 * 10 8 6 25 25 C 1.52958 * 109.82003 * 296.40414 * 5 4 3 26 26 C 1.51267 * 120.85134 * 180.27259 * 2 1 3 27 27 H 1.08005 * 120.00066 * 179.72021 * 1 2 3 28 28 H 1.08000 * 120.00414 * 359.72214 * 1 2 3 29 29 H 1.09007 * 109.62255 * 248.63780 * 3 2 1 30 30 H 1.09002 * 109.62461 * 9.20616 * 3 2 1 31 31 H 1.09000 * 109.47973 * 294.64729 * 4 3 2 32 32 H 1.08994 * 109.48667 * 174.60720 * 4 3 2 33 33 H 1.09008 * 109.35419 * 56.47509 * 5 4 3 34 34 H 1.09003 * 109.47156 * 84.40752 * 9 8 6 35 35 H 1.09004 * 109.46971 * 204.40572 * 9 8 6 36 36 H 1.08995 * 109.47085 * 324.40187 * 9 8 6 37 37 H 1.08996 * 109.47503 * 65.78177 * 10 8 6 38 38 H 1.08999 * 109.46955 * 59.99929 * 11 10 8 39 39 H 1.09000 * 109.47110 * 180.02562 * 11 10 8 40 40 H 1.09003 * 109.46860 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.47707 * 59.99918 * 12 11 10 42 42 H 1.08995 * 109.47271 * 299.99858 * 13 12 11 43 43 H 0.96995 * 120.00283 * 265.00361 * 14 13 12 44 44 H 0.97006 * 120.00257 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.47279 * 179.97438 * 23 13 12 46 46 H 1.09000 * 109.46970 * 59.99521 * 23 13 12 47 47 H 1.09000 * 109.47533 * 180.02562 * 24 10 8 48 48 H 1.08998 * 109.47483 * 300.00435 * 24 10 8 49 49 H 1.08996 * 109.48407 * 303.61984 * 25 5 4 50 50 H 1.09002 * 109.49325 * 183.58166 * 25 5 4 51 51 H 1.08999 * 109.62535 * 350.79435 * 26 2 1 52 52 H 1.09000 * 109.62549 * 111.17057 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0856 1.2987 0.0000 4 6 3.1191 1.2490 1.1302 5 6 3.9847 -0.0023 0.9726 6 6 5.0587 -0.0047 2.0297 7 8 5.1245 -0.9178 2.8252 8 7 5.9461 1.0077 2.0911 9 6 5.8670 2.1104 1.1298 10 6 6.9899 1.0056 3.1191 11 6 6.3465 0.8530 4.4989 12 6 5.3888 2.0201 4.7468 13 6 6.1646 3.3376 4.6887 14 7 5.2477 4.4551 4.9268 15 6 4.9523 4.8374 6.2081 16 1 5.3956 4.3153 7.0432 17 6 4.0831 5.8960 6.4337 18 7 3.5432 6.5325 5.4161 19 14 3.6807 6.4178 8.1816 20 1 4.9285 6.8240 8.8767 21 1 2.7363 7.5636 8.1511 22 1 3.0577 5.2814 8.9066 23 6 6.8080 3.4902 3.3090 24 6 7.7657 2.3230 3.0610 25 6 3.1191 -1.2542 1.1243 26 6 2.0857 -1.2986 -0.0062 27 1 -0.5400 -0.9353 -0.0046 28 1 -0.5401 0.9353 0.0045 29 1 2.5945 1.4212 -0.9562 30 1 1.4033 2.1327 0.1643 31 1 2.6056 1.2171 2.0911 32 1 3.7507 2.1361 1.0846 33 1 4.4477 0.0007 -0.0143 34 1 5.1455 2.8479 1.4814 35 1 6.8467 2.5784 1.0323 36 1 5.5502 1.7255 0.1606 37 1 7.6722 0.1742 2.9425 38 1 5.7938 -0.0855 4.5403 39 1 7.1231 0.8519 5.2637 40 1 4.9301 1.9112 5.7296 41 1 4.6122 2.0218 3.9820 42 1 6.9411 3.3360 5.4536 43 1 4.8497 4.9242 4.1768 44 1 2.9361 7.2725 5.5737 45 1 7.3603 4.4290 3.2675 46 1 6.0314 3.4918 2.5442 47 1 8.5426 2.3213 3.8256 48 1 8.2240 2.4318 2.0781 49 1 2.6056 -1.2269 2.0854 50 1 3.7506 -2.1412 1.0746 51 1 1.4034 -2.1334 0.1541 52 1 2.5917 -1.4182 -0.9641 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963854879.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:17 Heat of formation + Delta-G solvation = -8.757831 kcal Electronic energy + Delta-G solvation = -29157.818889 eV Core-core repulsion = 25543.615106 eV Total energy + Delta-G solvation = -3614.203783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85040 -38.70732 -37.34355 -35.12420 -33.62126 -32.54874 -31.24628 -30.87393 -30.55080 -28.09036 -26.99398 -26.06011 -23.61782 -23.10186 -22.22060 -22.16698 -20.76216 -19.73010 -18.64299 -18.46275 -17.08602 -16.81860 -15.94446 -15.68849 -15.17287 -14.97762 -14.82273 -14.35755 -14.05388 -13.98665 -13.64721 -13.46328 -13.37229 -13.08339 -12.89319 -12.57216 -12.41827 -12.32896 -12.11228 -11.93115 -11.72040 -11.62602 -11.50476 -11.36874 -11.13926 -11.00863 -10.83455 -10.65236 -10.54926 -10.33293 -10.21630 -10.12311 -10.01177 -9.62295 -9.54334 -9.30983 -9.08793 -8.78630 -8.40859 -6.90541 -5.73811 -3.01264 2.13688 2.76012 3.10455 3.45786 3.50220 3.51082 4.42479 4.46640 4.61380 4.65499 4.87573 4.94333 4.98682 5.04715 5.07977 5.16074 5.19732 5.24004 5.27982 5.38205 5.46592 5.55293 5.58756 5.61430 5.64764 5.72413 5.75397 5.78594 5.81620 5.84278 5.93259 5.97346 6.00667 6.04301 6.09427 6.11296 6.17539 6.24753 6.34665 6.48299 6.54144 6.58943 6.65238 6.73398 6.76017 6.93193 7.08007 7.21937 7.53196 7.73331 8.33747 8.45565 9.56465 10.15420 10.50052 11.49069 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.003981 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.386248 B = 7031.076778 C = 8387.587922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.123 4.123 5 C -0.102 4.102 6 C 0.519 3.481 7 O -0.539 6.539 8 N -0.601 5.601 9 C 0.065 3.935 10 C 0.154 3.846 11 C -0.139 4.139 12 C -0.125 4.125 13 C 0.180 3.820 14 N -0.725 5.725 15 C -0.235 4.235 16 H 0.068 0.932 17 C -0.014 4.014 18 N -0.935 5.935 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.144 4.144 24 C -0.122 4.122 25 C -0.095 4.095 26 C -0.085 4.085 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.042 0.958 43 H 0.382 0.618 44 H 0.254 0.746 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.070 0.930 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 -13.224 -15.482 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.120 4.120 3 C -0.120 4.120 4 C -0.160 4.160 5 C -0.124 4.124 6 C 0.307 3.693 7 O -0.416 6.416 8 N -0.334 5.334 9 C -0.078 4.078 10 C 0.052 3.948 11 C -0.178 4.178 12 C -0.166 4.166 13 C 0.070 3.930 14 N -0.365 5.365 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.584 5.584 19 Si 0.735 3.265 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.182 4.182 24 C -0.160 4.160 25 C -0.133 4.133 26 C -0.122 4.122 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.215 0.785 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.615 -13.641 -14.855 20.337 hybrid contribution -0.478 0.614 0.775 1.098 sum 2.137 -13.027 -14.080 19.301 Atomic orbital electron populations 1.23628 0.95045 1.01779 1.03157 1.22004 0.95109 0.95902 0.98956 1.20802 0.97558 0.94948 0.98709 1.21856 0.97365 0.97060 0.99766 1.21285 0.94948 0.97747 0.98383 1.20551 0.81813 0.81430 0.85469 1.90621 1.73204 1.36008 1.41756 1.47823 1.31299 1.22322 1.32001 1.22327 1.03470 0.90331 0.91652 1.21026 0.88292 0.97387 0.88099 1.22018 1.00020 1.01072 0.94657 1.22117 0.98123 0.95107 1.01213 1.20195 0.91636 0.87693 0.93476 1.42395 1.53121 1.35370 1.05604 1.19203 1.21407 1.11260 0.84737 0.91399 1.24694 1.00276 0.98936 0.97037 1.69639 1.35200 1.24715 1.28833 0.86313 0.77769 0.77833 0.84568 1.21343 1.21731 1.21345 1.22282 0.98954 0.96924 0.99991 1.21831 0.98352 0.94183 1.01646 1.21337 0.96438 0.96472 0.99004 1.20830 0.97574 0.94873 0.98951 0.88653 0.88429 0.90891 0.90759 0.90967 0.89641 0.88950 0.90860 0.89981 0.91795 0.91696 0.89884 0.91967 0.92569 0.93074 0.94007 0.78518 0.93586 0.91940 0.90523 0.90559 0.91817 0.91056 0.91067 0.91181 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 13.99 29.02 0.41 -1.50 16 2 C -0.12 -1.18 5.35 -100.51 -0.54 -1.72 16 3 C -0.08 -0.80 6.03 -27.49 -0.17 -0.96 16 4 C -0.12 -1.37 4.92 -26.63 -0.13 -1.50 16 5 C -0.10 -1.12 1.64 -91.82 -0.15 -1.27 16 6 C 0.52 7.23 6.62 -10.99 -0.07 7.16 16 7 O -0.54 -9.27 13.65 5.55 0.08 -9.19 16 8 N -0.60 -7.61 2.28 -173.93 -0.40 -8.01 16 9 C 0.06 0.65 6.76 59.85 0.40 1.05 16 10 C 0.15 2.08 3.05 -67.93 -0.21 1.87 16 11 C -0.14 -2.23 5.14 -26.73 -0.14 -2.36 16 12 C -0.13 -2.37 5.34 -26.73 -0.14 -2.52 16 13 C 0.18 3.54 2.77 -67.93 -0.19 3.35 16 14 N -0.72 -18.00 5.12 -53.42 -0.27 -18.28 16 15 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.94 -28.13 13.06 55.49 0.72 -27.40 16 19 Si 0.90 22.63 29.55 -169.99 -5.02 17.60 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.14 -2.20 4.84 -26.73 -0.13 -2.33 16 24 C -0.12 -1.50 4.91 -26.73 -0.13 -1.63 16 25 C -0.09 -1.05 4.54 -26.63 -0.12 -1.17 16 26 C -0.09 -0.78 6.03 -27.49 -0.17 -0.94 16 27 H 0.10 0.82 7.92 -52.48 -0.42 0.40 16 28 H 0.10 0.89 7.92 -52.49 -0.42 0.48 16 29 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.07 0.72 7.89 -51.93 -0.41 0.32 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.92 4.31 -51.93 -0.22 0.70 16 33 H 0.09 0.83 7.42 -51.92 -0.39 0.45 16 34 H 0.07 0.82 4.81 -51.93 -0.25 0.57 16 35 H 0.08 0.74 5.28 -51.93 -0.27 0.46 16 36 H 0.06 0.50 6.46 -51.93 -0.34 0.16 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.47 5.77 -51.93 -0.30 1.18 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.01 7.46 -51.93 -0.39 0.62 16 42 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.12 3.94 -51.93 -0.20 0.92 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.06 0.64 6.67 -51.93 -0.35 0.30 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 51 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 52 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -31.81 379.37 -9.75 -41.56 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.86 Total: 9.66 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.72 Total: -11.66 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.05 Total: -53.69 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.81 -9.75 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963854879.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.801 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds