Wall clock time and date at job start Tue Mar 31 2020 12:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 120.00171 * 2 1 4 4 H 1.08000 * 120.00003 * 211.67534 * 3 2 1 5 5 C 1.38815 * 119.99961 * 31.66578 * 3 2 1 6 6 N 1.31615 * 120.00119 * 356.07084 * 5 3 2 7 7 Si 1.86801 * 119.99758 * 176.06736 * 5 3 2 8 8 H 1.48501 * 109.47093 * 90.00722 * 7 5 3 9 9 H 1.48499 * 109.46876 * 210.00280 * 7 5 3 10 10 H 1.48499 * 109.47070 * 330.00109 * 7 5 3 11 11 C 1.46501 * 119.99778 * 179.97438 * 2 1 3 12 12 H 1.09007 * 110.91297 * 176.09991 * 11 2 1 13 13 C 1.55447 * 111.11552 * 52.10806 * 11 2 1 14 14 C 1.54322 * 102.96481 * 206.46148 * 13 11 2 15 15 N 1.47024 * 107.27201 * 22.19243 * 14 13 11 16 16 C 1.34780 * 125.64567 * 181.08127 * 15 14 13 17 17 O 1.21282 * 119.99938 * 175.07972 * 16 15 14 18 18 C 1.50698 * 120.00131 * 355.07405 * 16 15 14 19 19 C 1.53002 * 115.54818 * 96.67883 * 18 16 15 20 20 C 1.52997 * 109.47289 * 59.52940 * 19 18 16 21 21 C 1.53002 * 109.47289 * 180.02562 * 20 19 18 22 22 C 1.52994 * 109.46907 * 59.99776 * 21 20 19 23 23 C 1.52997 * 109.47329 * 300.00200 * 22 21 20 24 24 C 1.52992 * 109.47333 * 60.00115 * 23 22 21 25 25 C 1.52999 * 117.50198 * 310.97011 * 18 16 15 26 26 C 1.52997 * 117.49846 * 242.34570 * 18 16 15 27 27 C 1.47417 * 108.70363 * 1.05712 * 15 14 13 28 28 H 1.08996 * 109.47252 * 274.99666 * 1 2 3 29 29 H 1.08999 * 109.46779 * 34.99362 * 1 2 3 30 30 H 1.09003 * 109.47271 * 154.98962 * 1 2 3 31 31 H 0.97000 * 120.00264 * 179.97438 * 6 5 3 32 32 H 1.08996 * 110.71136 * 88.09004 * 13 11 2 33 33 H 1.08998 * 110.85736 * 324.90001 * 13 11 2 34 34 H 1.09003 * 109.88649 * 262.77121 * 14 13 11 35 35 H 1.09001 * 109.88488 * 141.60667 * 14 13 11 36 36 H 1.09005 * 109.46921 * 179.53149 * 19 18 16 37 37 H 1.08996 * 109.47124 * 300.00026 * 20 19 18 38 38 H 1.09009 * 109.47043 * 59.99979 * 20 19 18 39 39 H 1.09005 * 109.46921 * 300.00209 * 21 20 19 40 40 H 1.08997 * 109.47168 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46891 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.46976 * 60.00467 * 22 21 20 43 43 H 1.08998 * 109.46966 * 299.99490 * 23 22 21 44 44 H 1.09009 * 109.47043 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47715 * 179.97438 * 24 23 22 46 46 H 1.09005 * 109.46965 * 59.99736 * 24 23 22 47 47 H 1.09000 * 117.49478 * 359.97438 * 25 18 16 48 48 H 1.08996 * 117.49807 * 145.02243 * 25 18 16 49 49 H 1.09007 * 117.49812 * 214.97900 * 26 18 16 50 50 H 1.08997 * 117.50399 * 359.97438 * 26 18 16 51 51 H 1.09003 * 110.36553 * 94.71125 * 27 15 14 52 52 H 1.09005 * 110.36719 * 216.92366 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1091 1.2555 -0.4911 5 6 1.6107 2.2986 0.6311 6 7 0.4081 2.2357 1.1623 7 14 2.5922 3.8851 0.7265 8 1 2.2941 4.7238 -0.4622 9 1 2.2198 4.6241 1.9596 10 1 4.0427 3.5687 0.7580 11 6 2.1975 -1.2688 0.0006 12 1 3.2718 -1.0979 -0.0688 13 6 1.7061 -2.1995 -1.1434 14 6 2.0246 -3.6097 -0.6033 15 7 2.1181 -3.5057 0.8603 16 6 2.4033 -4.5182 1.7030 17 8 2.5425 -4.3000 2.8879 18 6 2.5491 -5.9213 1.1730 19 6 3.9831 -6.3751 0.8926 20 6 4.8018 -6.3050 2.1831 21 6 6.2360 -6.7582 1.9025 22 6 6.8635 -5.8422 0.8500 23 6 6.0448 -5.9123 -0.4406 24 6 4.6107 -5.4592 -0.1600 25 6 1.4483 -6.4453 0.2486 26 6 1.5613 -6.9741 1.6799 27 6 1.8489 -2.1106 1.2533 28 1 -0.3633 0.0895 1.0237 29 1 -0.3633 0.8419 -0.5894 30 1 -0.3634 -0.9313 -0.4345 31 1 0.0316 3.0131 1.6036 32 1 2.2584 -2.0049 -2.0627 33 1 0.6349 -2.0819 -1.3063 34 1 2.9735 -3.9575 -1.0117 35 1 1.2262 -4.3000 -0.8756 36 1 3.9740 -7.4007 0.5233 37 1 4.8109 -5.2795 2.5523 38 1 4.3544 -6.9573 2.9332 39 1 6.2273 -7.7837 1.5330 40 1 6.8192 -6.7086 2.8221 41 1 7.8854 -6.1648 0.6504 42 1 6.8723 -4.8167 1.2195 43 1 6.0362 -6.9377 -0.8101 44 1 6.4922 -5.2600 -1.1906 45 1 4.0275 -5.5087 -1.0795 46 1 4.6194 -4.4337 0.2095 47 1 0.6184 -5.7752 0.0241 48 1 1.7456 -7.1134 -0.5597 49 1 1.9330 -7.9901 1.8131 50 1 0.8063 -6.6519 2.3970 51 1 0.7978 -1.9860 1.5136 52 1 2.4834 -1.8236 2.0919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980274027.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:32 Heat of formation + Delta-G solvation = -18.186636 kcal Electronic energy + Delta-G solvation = -29045.829544 eV Core-core repulsion = 25431.216897 eV Total energy + Delta-G solvation = -3614.612647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75198 -39.65725 -38.63424 -37.13728 -36.52517 -33.46144 -31.64272 -31.44220 -31.23590 -29.56844 -28.06566 -26.14139 -24.63142 -23.98338 -23.55392 -22.87138 -22.46200 -20.96479 -20.78574 -19.40723 -18.97244 -17.91721 -17.55209 -16.87310 -16.40268 -16.23771 -15.76215 -15.28780 -15.13830 -15.03615 -14.81739 -14.73461 -14.65404 -14.34953 -14.12162 -13.74763 -13.59886 -13.39956 -13.28012 -13.03841 -12.98857 -12.77145 -12.52027 -12.45164 -12.36273 -12.19620 -12.15114 -12.04265 -11.97009 -11.83299 -11.80518 -11.41309 -11.36247 -11.31876 -10.85817 -10.73217 -10.63090 -10.54244 -9.62781 -8.71324 -7.89473 -5.44545 1.43679 1.46348 1.54735 1.59443 1.93640 2.47148 2.73535 3.25506 3.42224 3.54187 3.60870 3.79580 3.83966 3.91540 3.98747 4.03900 4.07711 4.19428 4.29315 4.32615 4.44735 4.46042 4.48308 4.62544 4.64494 4.66107 4.68392 4.71711 4.76030 4.79335 4.83860 4.88840 4.98628 5.04172 5.10468 5.18832 5.19878 5.22891 5.24681 5.27106 5.30275 5.31471 5.33399 5.40891 5.43363 5.47462 5.62050 5.63800 5.72935 6.33081 6.60523 7.12829 7.17049 7.80300 8.28168 9.13522 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.003496 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.335493 B = 8008.262098 C = 8687.545128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.601 5.601 3 C -0.275 4.275 4 H 0.072 0.928 5 C -0.041 4.041 6 N -0.933 5.933 7 Si 0.967 3.033 8 H -0.279 1.279 9 H -0.296 1.296 10 H -0.270 1.270 11 C 0.170 3.830 12 H 0.069 0.931 13 C -0.141 4.141 14 C 0.102 3.898 15 N -0.607 5.607 16 C 0.557 3.443 17 O -0.595 6.595 18 C -0.156 4.156 19 C -0.028 4.028 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.143 4.143 26 C -0.149 4.149 27 C 0.097 3.903 28 H -0.003 1.003 29 H 0.020 0.980 30 H 0.034 0.966 31 H 0.249 0.751 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.025 0.975 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.032 0.968 47 H 0.095 0.905 48 H 0.139 0.861 49 H 0.128 0.872 50 H 0.076 0.924 51 H 0.045 0.955 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 -23.896 -7.835 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.323 5.323 3 C -0.405 4.405 4 H 0.089 0.911 5 C -0.237 4.237 6 N -0.578 5.578 7 Si 0.794 3.206 8 H -0.206 1.206 9 H -0.222 1.222 10 H -0.194 1.194 11 C 0.060 3.940 12 H 0.087 0.913 13 C -0.180 4.180 14 C -0.019 4.019 15 N -0.339 5.339 16 C 0.347 3.653 17 O -0.476 6.476 18 C -0.159 4.159 19 C -0.046 4.046 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.150 4.150 24 C -0.156 4.156 25 C -0.180 4.180 26 C -0.187 4.187 27 C -0.029 4.029 28 H 0.015 0.985 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.051 0.949 47 H 0.114 0.886 48 H 0.157 0.843 49 H 0.146 0.854 50 H 0.095 0.905 51 H 0.063 0.937 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.344 -23.676 -7.107 25.788 hybrid contribution 0.007 1.940 1.172 2.266 sum 7.350 -21.737 -5.935 23.701 Atomic orbital electron populations 1.20557 0.82732 0.96078 0.97229 1.43918 1.01982 1.00753 1.85650 1.19504 1.03706 0.88607 1.28642 0.91081 1.26065 0.97717 1.02460 0.97448 1.70210 1.16317 1.30047 1.41242 0.85294 0.78853 0.79562 0.76887 1.20576 1.22223 1.19436 1.21622 0.95631 0.84858 0.91844 0.91266 1.23125 1.02658 0.93183 0.99069 1.22462 1.03581 0.97905 0.77988 1.48539 1.68428 1.08047 1.08897 1.20016 0.74591 0.86064 0.84623 1.90652 1.53083 1.85236 1.18605 1.21390 0.95772 0.90102 1.08641 1.20633 0.88057 1.00697 0.95214 1.21519 0.96219 1.00011 0.97379 1.21506 0.94502 1.00162 0.98821 1.21578 0.99707 0.98878 0.96035 1.21502 0.94065 1.02584 0.96837 1.21739 0.97041 0.97856 0.98966 1.23355 0.97854 1.02614 0.94136 1.23096 0.99460 0.98335 0.97773 1.22677 0.98906 0.81633 0.99714 0.98485 0.96160 0.94738 0.94122 0.88634 0.90631 0.88873 0.88837 0.87104 0.95640 0.92280 0.89855 0.92568 0.90756 0.94539 0.89793 0.91603 0.89466 0.94869 0.88637 0.84315 0.85356 0.90547 0.93675 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.80 7.86 127.77 1.00 9.80 16 2 N -0.60 -29.95 2.96 -694.45 -2.05 -32.01 16 3 C -0.27 -15.07 9.54 84.03 0.80 -14.27 16 4 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 5 C -0.04 -2.30 5.37 84.86 0.46 -1.84 16 6 N -0.93 -55.69 10.50 21.65 0.23 -55.46 16 7 Si 0.97 45.23 29.56 68.60 2.03 47.26 16 8 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 9 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 C 0.17 6.84 3.56 46.48 0.17 7.00 16 12 H 0.07 2.87 7.96 -2.38 -0.02 2.85 16 13 C -0.14 -4.11 6.48 31.88 0.21 -3.90 16 14 C 0.10 2.43 5.82 86.73 0.50 2.94 16 15 N -0.61 -19.83 3.31 -811.80 -2.69 -22.52 16 16 C 0.56 18.63 5.58 87.66 0.49 19.11 16 17 O -0.59 -26.01 16.52 -3.04 -0.05 -26.06 16 18 C -0.16 -3.41 1.00 -52.93 -0.05 -3.46 16 19 C -0.03 -0.49 2.01 -10.79 -0.02 -0.51 16 20 C -0.11 -2.55 4.91 30.59 0.15 -2.40 16 21 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 22 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 23 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 24 C -0.12 -2.09 3.69 30.59 0.11 -1.97 16 25 C -0.14 -2.12 8.51 30.59 0.26 -1.86 16 26 C -0.15 -2.73 9.94 30.59 0.30 -2.43 16 27 C 0.10 4.02 6.52 86.85 0.57 4.59 16 28 H 0.00 -0.18 7.29 -2.39 -0.02 -0.20 16 29 H 0.02 1.06 7.46 -2.39 -0.02 1.04 16 30 H 0.03 1.42 5.97 -2.39 -0.01 1.41 16 31 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.26 6.00 -2.39 -0.01 2.25 16 34 H 0.09 1.83 4.95 -2.39 -0.01 1.82 16 35 H 0.09 1.74 5.78 -2.39 -0.01 1.73 16 36 H 0.11 1.33 8.11 -2.38 -0.02 1.31 16 37 H 0.02 0.78 7.03 -2.39 -0.02 0.77 16 38 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.09 1.18 6.93 -2.39 -0.02 1.16 16 46 H 0.03 0.81 7.10 -2.38 -0.02 0.80 16 47 H 0.10 1.56 6.61 -2.39 -0.02 1.55 16 48 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 50 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.04 2.04 7.31 -2.39 -0.02 2.02 16 52 H 0.03 1.62 7.99 -2.38 -0.02 1.60 16 Total: -1.00 -72.37 384.94 3.83 -68.53 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.88 Total: 14.63 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.49 Total: 5.63 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.52 Total: -109.99 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.37 3.83 -68.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980274027.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.344 kcal (2) G-P(sol) polarization free energy of solvation -72.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds