Wall clock time and date at job start Tue Mar 31 2020 12:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00217 * 2 1 4 4 H 1.07994 * 120.00130 * 200.01659 * 3 2 1 5 5 C 1.38809 * 119.99509 * 20.00515 * 3 2 1 6 6 N 1.31620 * 120.00251 * 15.35127 * 5 3 2 7 7 Si 1.86801 * 119.99884 * 195.34140 * 5 3 2 8 8 H 1.48497 * 109.47253 * 60.00085 * 7 5 3 9 9 H 1.48500 * 109.47468 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47200 * 300.00703 * 7 5 3 11 11 C 1.46504 * 119.99928 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.49385 * 179.97438 * 11 2 1 13 13 C 1.53038 * 109.52564 * 59.85614 * 11 2 1 14 14 C 1.53068 * 109.65992 * 178.73356 * 13 11 2 15 15 C 1.53190 * 109.29946 * 61.15148 * 14 13 11 16 16 N 1.46927 * 108.88893 * 305.58008 * 15 14 13 17 17 C 1.34782 * 120.62920 * 233.55518 * 16 15 14 18 18 O 1.21278 * 119.99893 * 176.56939 * 17 16 15 19 19 C 1.50697 * 119.99795 * 356.56940 * 17 16 15 20 20 H 1.08997 * 109.47344 * 52.83624 * 19 17 16 21 21 C 1.52941 * 109.47817 * 292.82406 * 19 17 16 22 22 C 1.52939 * 109.82331 * 177.02318 * 21 19 17 23 23 C 1.53178 * 109.45432 * 62.98452 * 22 21 19 24 24 C 1.53158 * 108.88039 * 303.43584 * 23 22 21 25 25 C 1.52846 * 117.67725 * 268.50713 * 24 23 22 26 26 C 1.52807 * 117.75000 * 199.62391 * 24 23 22 27 27 C 1.53147 * 115.01119 * 53.93059 * 24 23 22 28 28 C 1.46923 * 118.74046 * 53.53672 * 16 15 14 29 29 H 1.09000 * 109.47103 * 274.52002 * 1 2 3 30 30 H 1.08995 * 109.47423 * 34.52403 * 1 2 3 31 31 H 1.09003 * 109.46888 * 154.52260 * 1 2 3 32 32 H 0.97008 * 120.00001 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.45579 * 298.69048 * 13 11 2 34 34 H 1.09003 * 109.46159 * 58.65584 * 13 11 2 35 35 H 1.09008 * 109.38968 * 301.27043 * 14 13 11 36 36 H 1.09007 * 109.62554 * 181.17391 * 14 13 11 37 37 H 1.08994 * 109.59062 * 185.72229 * 15 14 13 38 38 H 1.09001 * 109.58745 * 65.43519 * 15 14 13 39 39 H 1.08995 * 109.41608 * 297.13280 * 21 19 17 40 40 H 1.08997 * 109.41197 * 56.99092 * 21 19 17 41 41 H 1.09009 * 109.47366 * 182.97716 * 22 21 19 42 42 H 1.08999 * 109.47766 * 302.98569 * 22 21 19 43 43 H 1.09001 * 109.56912 * 63.25251 * 23 22 21 44 44 H 1.08999 * 109.57262 * 183.49281 * 23 22 21 45 45 H 1.08997 * 117.50727 * 359.72273 * 25 24 23 46 46 H 1.08997 * 117.50580 * 144.78026 * 25 24 23 47 47 H 1.08997 * 117.50624 * 215.10918 * 26 24 23 48 48 H 1.09002 * 117.50209 * 0.15589 * 26 24 23 49 49 H 1.08997 * 109.57121 * 186.23970 * 27 24 23 50 50 H 1.09002 * 109.56240 * 65.88558 * 27 24 23 51 51 H 1.09002 * 109.58667 * 66.17626 * 28 16 15 52 52 H 1.08995 * 109.58552 * 186.45736 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1807 1.2141 -0.3201 5 6 1.5184 2.3517 0.4113 6 7 0.3853 2.2866 1.0778 7 14 2.2772 4.0130 0.0190 8 1 2.3942 4.1686 -1.4532 9 1 1.4151 5.0922 0.5643 10 1 3.6260 4.0989 0.6344 11 6 2.1975 -1.2688 0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8259 -2.0745 -1.2464 14 6 2.6133 -3.3869 -1.2650 15 6 2.2509 -4.2124 -0.0265 16 7 2.4688 -3.3917 1.1726 17 6 3.2424 -3.8408 2.1808 18 8 3.4652 -3.1294 3.1374 19 6 3.8303 -5.2270 2.1195 20 1 4.3640 -5.3540 1.1776 21 6 2.7079 -6.2617 2.2131 22 6 3.2881 -7.6702 2.0773 23 6 4.2425 -7.9434 3.2438 24 6 5.3256 -6.8607 3.2621 25 6 6.6153 -7.1334 2.4886 26 6 6.6189 -7.1607 4.0187 27 6 4.8022 -5.4216 3.2873 28 6 1.8279 -2.0720 1.2515 29 1 -0.3633 0.0810 1.0245 30 1 -0.3634 0.8466 -0.5824 31 1 -0.3633 -0.9278 -0.4421 32 1 -0.0556 3.1014 1.3655 33 1 0.7584 -2.2939 -1.2321 34 1 2.0655 -1.4949 -2.1379 35 1 3.6813 -3.1684 -1.2569 36 1 2.3638 -3.9509 -2.1639 37 1 2.8819 -5.1000 0.0186 38 1 1.2039 -4.5107 -0.0797 39 1 2.2076 -6.1674 3.1768 40 1 1.9882 -6.0888 1.4129 41 1 2.4784 -8.3998 2.0917 42 1 3.8323 -7.7499 1.1362 43 1 3.6881 -7.9211 4.1820 44 1 4.7045 -8.9224 3.1160 45 1 6.6979 -8.0875 1.9679 46 1 7.0973 -6.2872 1.9991 47 1 7.1033 -6.3325 4.5358 48 1 6.7039 -8.1328 4.5045 49 1 5.6368 -4.7278 3.1874 50 1 4.2835 -5.2384 4.2283 51 1 0.7458 -2.1937 1.3011 52 1 2.1778 -1.5485 2.1412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027411537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:44 Heat of formation + Delta-G solvation = -4.131973 kcal Electronic energy + Delta-G solvation = -28605.022283 eV Core-core repulsion = 24991.019093 eV Total energy + Delta-G solvation = -3614.003191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.54896 -38.98215 -37.32721 -35.26704 -34.77216 -32.29568 -31.42189 -31.09169 -28.83030 -27.60253 -25.99506 -25.46514 -23.82528 -22.87508 -22.74373 -21.85898 -21.45100 -19.41612 -18.81087 -18.51016 -16.89678 -16.68039 -15.89638 -15.50647 -15.30301 -14.86829 -14.76047 -14.31405 -14.08754 -13.77835 -13.75338 -13.54349 -13.35183 -13.02731 -12.77706 -12.61362 -12.42192 -12.21400 -12.03639 -11.87608 -11.70872 -11.42420 -11.29082 -11.11763 -11.02342 -10.99238 -10.77821 -10.65041 -10.56987 -10.38795 -10.32583 -10.18215 -10.09608 -9.81695 -9.76831 -9.72667 -9.29709 -8.55088 -8.25030 -6.76134 -5.70256 -3.13400 2.89951 3.24278 3.42250 3.46991 3.48250 3.57304 4.32456 4.45487 4.51803 4.56346 4.65220 4.84688 4.89094 4.93411 5.01671 5.03923 5.15431 5.17620 5.31183 5.35243 5.38831 5.44617 5.45781 5.55778 5.61209 5.63037 5.69569 5.71479 5.76052 5.79258 5.92715 5.93217 5.94716 5.97242 6.01148 6.05326 6.15353 6.20376 6.23774 6.25942 6.40298 6.53177 6.71628 6.80829 6.96027 7.02106 7.40077 7.72575 7.75309 7.83679 8.40180 8.49966 9.25504 9.88972 10.36514 11.34928 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.002992 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.571387 B = 9357.439004 C = 9884.479922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.170 3.830 12 H 0.063 0.937 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.106 3.894 16 N -0.606 5.606 17 C 0.513 3.487 18 O -0.541 6.541 19 C -0.100 4.100 20 H 0.093 0.907 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.082 4.082 24 C -0.121 4.121 25 C -0.176 4.176 26 C -0.175 4.175 27 C -0.060 4.060 28 C 0.098 3.902 29 H 0.028 0.972 30 H 0.044 0.956 31 H -0.001 1.001 32 H 0.253 0.747 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.059 0.941 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -23.463 -0.737 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.171 4.171 15 C -0.017 4.017 16 N -0.339 5.339 17 C 0.300 3.700 18 O -0.419 6.419 19 C -0.122 4.122 20 H 0.111 0.889 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.213 4.213 26 C -0.212 4.212 27 C -0.098 4.098 28 C -0.026 4.026 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.110 0.890 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.078 0.922 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.341 -22.884 -0.155 23.747 hybrid contribution 0.306 1.001 -0.227 1.071 sum 6.648 -21.883 -0.382 22.874 Atomic orbital electron populations 1.20786 0.82563 0.95621 0.99310 1.43958 1.01866 1.00052 1.85489 1.19193 0.96796 0.84774 1.37757 0.91357 1.24957 0.97886 0.98344 0.98445 1.70085 1.18800 1.26879 1.39354 0.86327 0.78399 0.83745 0.78040 1.21137 1.21648 1.20938 1.20600 0.96392 0.86173 0.90817 0.91848 1.22083 0.99627 0.94953 1.00581 1.21924 1.01048 0.97312 0.96774 1.21809 1.01183 0.93694 0.85020 1.48278 1.49020 1.18999 1.17643 1.20611 0.78483 0.88523 0.82366 1.90698 1.59671 1.58266 1.33215 1.21273 0.97454 0.92307 1.01133 0.88911 1.21579 0.96774 0.93685 1.03111 1.21499 0.98604 0.96223 0.98733 1.21155 0.95548 0.96271 0.98937 1.21508 0.89231 0.96316 1.05079 1.23033 1.01053 1.02907 0.94275 1.22977 1.00892 1.02842 0.94535 1.20932 0.98216 0.92564 0.98093 1.22515 0.96573 0.81217 1.02295 0.95399 0.93703 0.98213 0.93698 0.92303 0.91748 0.91813 0.91277 0.90050 0.91651 0.91343 0.90989 0.91601 0.91685 0.91440 0.91913 0.89015 0.88856 0.88781 0.88974 0.91313 0.90483 0.92242 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 7.92 59.85 0.47 4.43 16 2 N -0.59 -14.85 2.82 -173.35 -0.49 -15.34 16 3 C -0.26 -7.14 9.62 -15.06 -0.14 -7.28 16 4 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 5 C 0.00 0.06 5.05 -17.43 -0.09 -0.03 16 6 N -0.91 -26.77 10.67 55.49 0.59 -26.18 16 7 Si 0.90 22.26 29.58 -169.99 -5.03 17.23 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.17 3.49 2.74 -67.81 -0.19 3.31 16 12 H 0.06 1.40 7.85 -51.93 -0.41 0.99 16 13 C -0.13 -2.19 5.12 -26.68 -0.14 -2.32 16 14 C -0.13 -1.63 6.09 -26.60 -0.16 -1.79 16 15 C 0.11 1.24 4.95 -3.71 -0.02 1.22 16 16 N -0.61 -9.51 2.97 -172.78 -0.51 -10.02 16 17 C 0.51 8.26 7.00 -10.98 -0.08 8.19 16 18 O -0.54 -11.16 15.33 5.56 0.09 -11.07 16 19 C -0.10 -1.15 1.68 -91.71 -0.15 -1.30 16 20 H 0.09 0.95 7.15 -51.93 -0.37 0.58 16 21 C -0.11 -1.07 4.73 -26.79 -0.13 -1.20 16 22 C -0.11 -0.83 5.93 -26.67 -0.16 -0.99 16 23 C -0.08 -0.63 5.67 -26.56 -0.15 -0.78 16 24 C -0.12 -1.09 1.97 -154.53 -0.31 -1.39 16 25 C -0.18 -1.43 9.93 -26.79 -0.27 -1.69 16 26 C -0.18 -1.46 9.99 -26.81 -0.27 -1.73 16 27 C -0.06 -0.70 4.33 -26.56 -0.12 -0.81 16 28 C 0.10 1.92 5.80 -3.71 -0.02 1.90 16 29 H 0.03 0.74 7.44 -51.93 -0.39 0.36 16 30 H 0.04 1.18 7.16 -51.93 -0.37 0.81 16 31 H 0.00 -0.01 6.45 -51.93 -0.34 -0.35 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.75 4.98 -51.93 -0.26 0.49 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.64 5.93 -51.93 -0.31 0.33 16 41 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 50 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 51 H 0.06 1.18 7.52 -51.93 -0.39 0.79 16 52 H 0.09 2.12 7.00 -51.93 -0.36 1.76 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -31.70 387.34 -10.83 -42.53 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -9.41 Total: -0.71 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.90 Total: -2.28 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.41 Total: -51.54 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.70 -10.83 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027411537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.403 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds