Wall clock time and date at job start Tue Mar 31 2020 12:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36943 * 119.99751 * 2 1 4 4 H 1.07995 * 119.99537 * 204.21478 * 3 2 1 5 5 C 1.38808 * 119.99769 * 24.21030 * 3 2 1 6 6 N 1.31615 * 120.00672 * 15.06753 * 5 3 2 7 7 Si 1.86804 * 119.99674 * 195.06252 * 5 3 2 8 8 H 1.48497 * 109.47101 * 90.00290 * 7 5 3 9 9 H 1.48501 * 109.47138 * 210.00365 * 7 5 3 10 10 H 1.48500 * 109.47206 * 330.00088 * 7 5 3 11 11 C 1.46497 * 120.00236 * 179.97438 * 2 1 3 12 12 H 1.08994 * 109.49699 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49630 * 59.93109 * 11 2 1 14 14 C 1.53110 * 109.50157 * 178.68504 * 13 11 2 15 15 C 1.53187 * 109.33024 * 61.34632 * 14 13 11 16 16 N 1.46926 * 108.77461 * 305.36182 * 15 14 13 17 17 C 1.34773 * 120.63253 * 233.62824 * 16 15 14 18 18 O 1.21286 * 120.00053 * 354.41303 * 17 16 15 19 19 C 1.50708 * 120.00186 * 174.41249 * 17 16 15 20 20 H 1.09000 * 109.47135 * 314.61778 * 19 17 16 21 21 C 1.52947 * 109.47341 * 74.62275 * 19 17 16 22 22 C 1.52940 * 109.82105 * 182.97943 * 21 19 17 23 23 C 1.53181 * 109.45114 * 297.02022 * 22 21 19 24 24 C 1.53154 * 108.88455 * 56.56558 * 23 22 21 25 25 C 1.52803 * 117.74616 * 160.37578 * 24 23 22 26 26 C 1.52845 * 117.67663 * 91.49422 * 24 23 22 27 27 C 1.53146 * 115.00685 * 306.06178 * 24 23 22 28 28 C 1.46932 * 118.73853 * 53.61220 * 16 15 14 29 29 H 1.09007 * 109.46833 * 273.92405 * 1 2 3 30 30 H 1.08998 * 109.46899 * 33.92277 * 1 2 3 31 31 H 1.08997 * 109.46722 * 153.92495 * 1 2 3 32 32 H 0.97004 * 120.00739 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.46281 * 298.67424 * 13 11 2 34 34 H 1.09006 * 109.45849 * 58.63353 * 13 11 2 35 35 H 1.09006 * 109.48958 * 301.38802 * 14 13 11 36 36 H 1.09004 * 109.51494 * 181.31882 * 14 13 11 37 37 H 1.09005 * 109.58669 * 185.57633 * 15 14 13 38 38 H 1.08994 * 109.70289 * 65.22171 * 15 14 13 39 39 H 1.09001 * 109.41415 * 303.08414 * 21 19 17 40 40 H 1.09002 * 109.41091 * 62.94172 * 21 19 17 41 41 H 1.09001 * 109.47573 * 57.01168 * 22 21 19 42 42 H 1.08996 * 109.47475 * 177.02396 * 22 21 19 43 43 H 1.08998 * 109.56617 * 176.38722 * 23 22 21 44 44 H 1.09004 * 109.56748 * 296.62003 * 23 22 21 45 45 H 1.09000 * 117.51164 * 359.85020 * 25 24 23 46 46 H 1.09000 * 117.50004 * 144.88879 * 25 24 23 47 47 H 1.09002 * 117.49818 * 215.21713 * 26 24 23 48 48 H 1.08990 * 117.50682 * 0.26997 * 26 24 23 49 49 H 1.08998 * 109.56907 * 294.12323 * 27 24 23 50 50 H 1.08995 * 109.56945 * 173.76596 * 27 24 23 51 51 H 1.08997 * 109.58653 * 186.60173 * 28 16 15 52 52 H 1.09001 * 109.69953 * 66.24508 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1584 1.2271 -0.3836 5 6 1.5472 2.3352 0.4930 6 7 0.4555 2.2448 1.2226 7 14 2.2858 4.0102 0.1209 8 1 1.7001 4.5413 -1.1361 9 1 1.9878 4.9418 1.2382 10 1 3.7567 3.8789 -0.0351 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0699 0.0009 13 6 1.8270 -2.0730 -1.2476 14 6 2.6172 -3.3844 -1.2638 15 6 2.2511 -4.2123 -0.0280 16 7 2.4679 -3.3923 1.1717 17 6 3.2404 -3.8419 2.1804 18 8 3.6815 -4.9713 2.1494 19 6 3.5561 -2.9414 3.3469 20 1 3.8376 -1.9549 2.9786 21 6 2.3235 -2.8180 4.2440 22 6 2.6114 -1.8473 5.3903 23 6 3.7406 -2.4068 6.2611 24 6 4.9683 -2.6570 5.3803 25 6 6.3271 -2.7715 6.0698 26 6 5.9884 -1.5267 5.2467 27 6 4.7156 -3.5361 4.1520 28 6 1.8267 -2.0726 1.2508 29 1 -0.3633 0.0703 1.0253 30 1 -0.3633 0.8527 -0.5735 31 1 -0.3633 -0.9231 -0.4517 32 1 0.0342 3.0479 1.5668 33 1 0.7595 -2.2926 -1.2344 34 1 2.0672 -1.4923 -2.1383 35 1 3.6850 -3.1657 -1.2520 36 1 2.3709 -3.9467 -2.1645 37 1 2.8821 -5.1000 0.0172 38 1 1.2042 -4.5106 -0.0825 39 1 1.4837 -2.4463 3.6569 40 1 2.0741 -3.7969 4.6536 41 1 2.9114 -0.8820 4.9824 42 1 1.7134 -1.7230 5.9954 43 1 3.9911 -1.6874 7.0407 44 1 3.4197 -3.3431 6.7178 45 1 6.3518 -2.6665 7.1545 46 1 7.0477 -3.4727 5.6488 47 1 6.4861 -1.4090 4.2840 48 1 5.7900 -0.6028 5.7897 49 1 4.4577 -4.5455 4.4723 50 1 5.6124 -3.5655 3.5333 51 1 2.1777 -1.5485 2.1397 52 1 0.7445 -2.1923 1.3006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027411538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:47 Heat of formation + Delta-G solvation = -20.420240 kcal Electronic energy + Delta-G solvation = -29209.309414 eV Core-core repulsion = 25594.599911 eV Total energy + Delta-G solvation = -3614.709503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.70354 -39.96106 -38.81957 -36.60253 -35.87032 -33.85555 -33.13689 -31.96440 -30.35948 -28.47888 -27.99229 -26.70128 -25.26249 -24.48128 -23.40382 -22.77044 -22.40325 -20.96881 -19.82142 -19.63444 -18.70994 -18.02623 -17.04399 -16.94569 -16.40849 -16.15725 -15.86205 -15.71738 -15.24283 -15.22107 -15.05242 -14.74717 -14.46234 -14.35489 -14.07213 -13.71275 -13.70711 -13.53649 -13.41066 -12.93436 -12.82938 -12.76065 -12.50897 -12.37592 -12.26110 -12.14126 -12.12306 -12.09231 -12.04462 -11.85783 -11.72081 -11.58490 -11.52432 -11.39274 -10.83614 -10.67698 -10.57337 -10.39693 -9.68333 -8.71443 -7.80964 -5.29727 1.47173 1.49393 1.56172 1.56842 1.99364 2.52223 2.86632 3.31098 3.34806 3.66460 3.68469 3.81858 3.88777 3.93988 4.02130 4.07035 4.13875 4.17062 4.21382 4.25622 4.29605 4.38026 4.44194 4.51252 4.58633 4.63581 4.70917 4.79606 4.81511 4.87029 4.88776 4.97715 4.99388 5.02584 5.05237 5.07030 5.09209 5.14126 5.18463 5.26074 5.28311 5.29897 5.39165 5.42219 5.46343 5.51036 5.58178 5.67458 5.73101 6.32568 6.40698 7.12714 7.17685 7.88394 8.32555 9.20938 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.004876 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.663008 B = 5740.469371 C = 7493.119929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.603 5.603 3 C -0.263 4.263 4 H 0.064 0.936 5 C -0.040 4.040 6 N -0.929 5.929 7 Si 0.958 3.042 8 H -0.288 1.288 9 H -0.295 1.295 10 H -0.272 1.272 11 C 0.164 3.836 12 H 0.050 0.950 13 C -0.124 4.124 14 C -0.118 4.118 15 C 0.109 3.891 16 N -0.605 5.605 17 C 0.519 3.481 18 O -0.580 6.580 19 C -0.098 4.098 20 H 0.086 0.914 21 C -0.104 4.104 22 C -0.112 4.112 23 C -0.075 4.075 24 C -0.131 4.131 25 C -0.161 4.161 26 C -0.182 4.182 27 C -0.050 4.050 28 C 0.107 3.893 29 H 0.008 0.992 30 H 0.012 0.988 31 H 0.033 0.967 32 H 0.248 0.752 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.069 0.931 50 H 0.056 0.944 51 H 0.079 0.921 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -11.532 5.956 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.326 5.326 3 C -0.393 4.393 4 H 0.082 0.918 5 C -0.237 4.237 6 N -0.575 5.575 7 Si 0.787 3.213 8 H -0.215 1.215 9 H -0.222 1.222 10 H -0.197 1.197 11 C 0.056 3.944 12 H 0.068 0.932 13 C -0.163 4.163 14 C -0.157 4.157 15 C -0.013 4.013 16 N -0.337 5.337 17 C 0.308 3.692 18 O -0.461 6.461 19 C -0.119 4.119 20 H 0.104 0.896 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.112 4.112 24 C -0.131 4.131 25 C -0.198 4.198 26 C -0.219 4.219 27 C -0.088 4.088 28 C -0.018 4.018 29 H 0.026 0.974 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.126 0.874 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.116 0.884 49 H 0.087 0.913 50 H 0.074 0.926 51 H 0.097 0.903 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.457 -11.979 5.991 14.463 hybrid contribution 0.079 1.425 -0.364 1.473 sum 5.537 -10.554 5.627 13.180 Atomic orbital electron populations 1.20520 0.82712 0.96067 0.97660 1.44064 1.01945 1.00784 1.85780 1.19419 0.99209 0.86791 1.33913 0.91817 1.25631 0.98836 1.01280 0.97926 1.70186 1.22736 1.27750 1.36795 0.85413 0.78400 0.80666 0.76837 1.21529 1.22164 1.19657 1.20779 0.95201 0.85264 0.93107 0.93196 1.21949 1.00316 0.95784 0.98256 1.21836 1.00002 0.95786 0.98051 1.21706 1.02031 0.94038 0.83522 1.48286 1.48479 1.18573 1.18320 1.20995 0.76912 0.87425 0.83830 1.90607 1.54605 1.20982 1.79858 1.21269 0.98422 0.98752 0.93469 0.89633 1.21476 0.95306 1.00750 0.96699 1.21470 0.99161 0.98002 0.96340 1.21136 0.92409 1.01420 0.96275 1.21473 0.91768 1.01405 0.98446 1.23038 0.97059 1.00068 0.99615 1.23063 1.03258 0.93549 1.01989 1.20816 0.96008 0.98105 0.93884 1.22386 0.97140 0.81532 1.00751 0.97394 0.96901 0.94850 0.94234 0.91797 0.92483 0.92468 0.88281 0.89693 0.90461 0.92081 0.91189 0.92818 0.90447 0.90637 0.90713 0.87369 0.88658 0.89642 0.88413 0.91265 0.92557 0.90265 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.06 7.94 127.77 1.01 9.07 16 2 N -0.60 -28.16 2.81 -702.34 -1.97 -30.13 16 3 C -0.26 -13.79 9.55 84.03 0.80 -12.99 16 4 H 0.06 3.32 7.85 -2.91 -0.02 3.30 16 5 C -0.04 -2.17 5.04 84.86 0.43 -1.74 16 6 N -0.93 -52.37 10.91 21.65 0.24 -52.13 16 7 Si 0.96 43.73 29.58 68.60 2.03 45.76 16 8 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 9 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 C 0.16 6.22 2.74 45.07 0.12 6.34 16 12 H 0.05 2.03 7.87 -2.39 -0.02 2.01 16 13 C -0.12 -3.84 5.13 30.64 0.16 -3.68 16 14 C -0.12 -2.97 6.08 30.69 0.19 -2.78 16 15 C 0.11 2.90 6.42 86.36 0.55 3.45 16 16 N -0.60 -18.67 2.97 -818.89 -2.43 -21.11 16 17 C 0.52 16.78 6.93 87.66 0.61 17.38 16 18 O -0.58 -21.26 15.37 -3.05 -0.05 -21.31 16 19 C -0.10 -2.80 1.67 -11.50 -0.02 -2.82 16 20 H 0.09 2.68 7.15 -2.39 -0.02 2.66 16 21 C -0.10 -2.73 4.72 30.56 0.14 -2.59 16 22 C -0.11 -2.63 5.93 30.63 0.18 -2.45 16 23 C -0.08 -1.51 5.67 30.71 0.17 -1.33 16 24 C -0.13 -2.87 1.97 -52.20 -0.10 -2.97 16 25 C -0.16 -2.98 9.99 30.54 0.31 -2.68 16 26 C -0.18 -3.90 9.93 30.55 0.30 -3.60 16 27 C -0.05 -1.31 4.42 30.70 0.14 -1.17 16 28 C 0.11 3.63 4.67 86.36 0.40 4.03 16 29 H 0.01 0.39 7.38 -2.38 -0.02 0.38 16 30 H 0.01 0.63 7.40 -2.39 -0.02 0.61 16 31 H 0.03 1.29 6.45 -2.39 -0.02 1.28 16 32 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.06 1.93 6.71 -2.39 -0.02 1.92 16 34 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 2.32 7.04 -2.38 -0.02 2.31 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.74 6.13 -2.39 -0.01 1.73 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 44 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.07 1.88 7.83 -2.39 -0.02 1.86 16 50 H 0.06 1.53 8.09 -2.39 -0.02 1.51 16 51 H 0.08 2.89 4.74 -2.39 -0.01 2.88 16 52 H 0.06 2.19 7.51 -2.39 -0.02 2.17 16 Total: -1.00 -60.66 388.04 4.09 -56.58 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.87 Total: 22.86 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.40 Total: -0.52 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -4.17 Total: -103.37 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -60.66 4.09 -56.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027411538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.156 kcal (2) G-P(sol) polarization free energy of solvation -60.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds