Wall clock time and date at job start Tue Mar 31 2020 12:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34778 * 120.00335 * 2 1 4 4 O 1.21279 * 119.99879 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99932 * 359.97438 * 3 2 1 6 6 C 1.50911 * 117.14214 * 109.35700 * 5 3 2 7 7 H 1.09004 * 117.54157 * 0.92835 * 6 5 3 8 8 C 1.54602 * 123.59821 * 202.02258 * 6 5 3 9 9 C 1.54819 * 102.35476 * 235.51509 * 8 6 5 10 10 C 1.49147 * 109.52436 * 303.55099 * 9 8 6 11 11 C 1.51246 * 120.88568 * 82.02017 * 10 9 8 12 12 C 1.54373 * 111.08095 * 35.29275 * 11 10 9 13 13 C 1.54172 * 109.17450 * 258.99695 * 12 11 10 14 14 C 1.48771 * 112.50729 * 63.92386 * 13 12 11 15 15 H 1.09001 * 112.25304 * 72.57891 * 14 13 12 16 16 C 1.46502 * 119.99641 * 179.97438 * 2 1 3 17 17 H 1.08998 * 110.88578 * 183.88159 * 16 2 1 18 18 C 1.55155 * 111.00354 * 60.00388 * 16 2 1 19 19 C 1.54324 * 102.94251 * 277.42633 * 18 16 2 20 20 N 1.47024 * 107.26656 * 337.80564 * 19 18 16 21 21 C 1.36944 * 125.64335 * 178.98938 * 20 19 18 22 22 H 1.08000 * 119.99397 * 179.97438 * 21 20 19 23 23 C 1.38804 * 120.00100 * 359.97269 * 21 20 19 24 24 N 1.31622 * 120.00470 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46729 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47141 * 119.99988 * 25 23 21 28 28 H 1.48498 * 109.46870 * 240.00137 * 25 23 21 29 29 C 1.47420 * 108.70749 * 358.93809 * 20 19 18 30 30 H 1.09001 * 109.47180 * 89.99892 * 1 2 3 31 31 H 1.09000 * 109.47399 * 209.99982 * 1 2 3 32 32 H 1.09004 * 109.47271 * 330.00328 * 1 2 3 33 33 H 1.08996 * 115.43270 * 324.80922 * 5 3 2 34 34 H 1.08994 * 110.86528 * 117.24948 * 8 6 5 35 35 H 1.08994 * 110.84621 * 353.77762 * 8 6 5 36 36 H 1.09002 * 109.46050 * 183.53876 * 9 8 6 37 37 H 1.09004 * 109.45847 * 63.56775 * 9 8 6 38 38 H 1.08997 * 107.13338 * 204.94361 * 10 9 8 39 39 H 1.08997 * 107.13516 * 319.08923 * 10 9 8 40 40 H 1.09002 * 109.15793 * 155.70277 * 11 10 9 41 41 H 1.09004 * 109.15296 * 274.87833 * 11 10 9 42 42 H 1.09000 * 109.51872 * 18.90116 * 12 11 10 43 43 H 1.08996 * 109.52602 * 139.02667 * 12 11 10 44 44 H 1.08996 * 108.87783 * 184.70753 * 13 12 11 45 45 H 1.08999 * 108.87136 * 303.24726 * 13 12 11 46 46 H 1.09003 * 110.72118 * 35.78932 * 18 16 2 47 47 H 1.09005 * 110.71932 * 159.06325 * 18 16 2 48 48 H 1.08992 * 109.88444 * 97.22560 * 19 18 16 49 49 H 1.09005 * 109.88095 * 218.23846 * 19 18 16 50 50 H 0.96999 * 120.00209 * 179.97438 * 24 23 21 51 51 H 1.08995 * 110.37157 * 265.29467 * 29 20 19 52 52 H 1.09006 * 110.36613 * 142.96400 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 1.4262 3.2914 1.2663 7 1 2.0090 2.9007 2.1005 8 6 0.3675 4.3576 1.6301 9 6 1.2333 5.6216 1.8530 10 6 2.2633 5.3428 2.8952 11 6 3.5513 4.6324 2.5434 12 6 4.0375 5.0300 1.1332 13 6 3.6677 3.9134 0.1365 14 6 2.1969 3.7365 -0.0006 15 1 1.7329 4.5522 -0.5551 16 6 2.1974 -1.2688 0.0006 17 1 3.2716 -1.0973 0.0694 18 6 1.8482 -2.1130 -1.2535 19 6 0.5309 -2.8068 -0.8474 20 7 0.4792 -2.8192 0.6219 21 6 -0.5406 -3.3295 1.3802 22 1 -0.4835 -3.2908 2.4580 23 6 -1.6475 -3.8963 0.7637 24 7 -1.7169 -3.9439 -0.5498 25 14 -3.0388 -4.5918 1.7982 26 1 -2.7200 -4.4173 3.2380 27 1 -4.2992 -3.8742 1.4793 28 1 -3.2029 -6.0371 1.4996 29 6 1.7073 -2.1925 1.1436 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 0.4550 2.4754 -0.5682 34 1 -0.1615 4.0837 2.5428 35 1 -0.3318 4.5063 0.8075 36 1 0.5977 6.4439 2.1814 37 1 1.7257 5.8937 0.9194 38 1 2.5357 6.2993 3.3412 39 1 1.7784 4.7597 3.6780 40 1 4.3165 4.8967 3.2732 41 1 3.3856 3.5554 2.5742 42 1 3.5575 5.9610 0.8315 43 1 5.1189 5.1651 1.1453 44 1 4.0858 4.1593 -0.8396 45 1 4.1037 2.9754 0.4803 46 1 1.6943 -1.4704 -2.1204 47 1 2.6269 -2.8496 -1.4515 48 1 -0.3185 -2.2505 -1.2436 49 1 0.5163 -3.8275 -1.2297 50 1 -2.4902 -4.3403 -0.9807 51 1 2.4566 -2.9525 1.3648 52 1 1.4849 -1.6068 2.0356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033447358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:12 Heat of formation + Delta-G solvation = 9.443369 kcal Electronic energy + Delta-G solvation = -29012.864371 eV Core-core repulsion = 25399.449851 eV Total energy + Delta-G solvation = -3613.414520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87946 -40.33520 -38.74082 -35.81788 -35.71547 -34.03669 -33.88095 -31.21652 -29.73737 -29.19543 -27.46037 -26.91906 -26.34609 -24.87774 -22.88212 -21.95373 -21.49230 -21.20104 -20.30000 -19.56356 -18.88619 -18.26022 -17.02095 -16.72205 -16.54189 -16.18380 -15.84743 -15.65190 -15.40965 -15.22363 -14.85613 -14.43146 -14.34648 -14.12541 -13.99120 -13.77201 -13.44357 -13.41569 -13.16690 -12.99987 -12.82678 -12.80754 -12.69987 -12.34786 -12.27675 -12.13716 -12.07443 -11.97387 -11.87010 -11.78261 -11.64095 -11.53438 -11.28258 -11.11522 -10.71465 -10.67484 -10.44317 -10.12488 -9.64428 -8.78770 -7.82169 -5.17701 1.48272 1.48856 1.50435 1.59443 2.05113 2.51059 2.77247 3.37449 3.48734 3.62861 3.66708 3.84496 3.90347 4.00141 4.01751 4.04575 4.13168 4.22040 4.27995 4.30333 4.41561 4.43712 4.60613 4.62349 4.66557 4.68160 4.73854 4.74023 4.88105 4.92420 4.96437 5.00451 5.01659 5.04045 5.05272 5.17359 5.22590 5.23453 5.28316 5.31616 5.43240 5.48837 5.49220 5.58572 5.61988 5.64980 5.68225 5.73877 5.81107 6.20003 6.53679 7.12439 7.22239 7.77387 8.42210 9.27519 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.003350 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.226839 B = 8356.749250 C = 9128.983433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.588 5.588 3 C 0.535 3.465 4 O -0.574 6.574 5 C -0.157 4.157 6 C -0.133 4.133 7 H 0.100 0.900 8 C -0.082 4.082 9 C -0.112 4.112 10 C -0.115 4.115 11 C -0.118 4.118 12 C -0.105 4.105 13 C -0.096 4.096 14 C -0.123 4.123 15 H 0.112 0.888 16 C 0.133 3.867 17 H 0.104 0.896 18 C -0.141 4.141 19 C 0.189 3.811 20 N -0.614 5.614 21 C -0.238 4.238 22 H 0.079 0.921 23 C -0.055 4.055 24 N -0.945 5.945 25 Si 0.972 3.028 26 H -0.269 1.269 27 H -0.290 1.290 28 H -0.297 1.297 29 C 0.127 3.873 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.028 0.972 49 H 0.005 0.995 50 H 0.246 0.754 51 H 0.036 0.964 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.402 20.731 2.677 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.319 5.319 3 C 0.325 3.675 4 O -0.454 6.454 5 C -0.177 4.177 6 C -0.151 4.151 7 H 0.118 0.882 8 C -0.120 4.120 9 C -0.149 4.149 10 C -0.153 4.153 11 C -0.156 4.156 12 C -0.142 4.142 13 C -0.134 4.134 14 C -0.141 4.141 15 H 0.130 0.870 16 C 0.028 3.972 17 H 0.122 0.878 18 C -0.181 4.181 19 C 0.064 3.936 20 N -0.341 5.341 21 C -0.366 4.366 22 H 0.097 0.903 23 C -0.249 4.249 24 N -0.594 5.594 25 Si 0.801 3.199 26 H -0.193 1.193 27 H -0.217 1.217 28 H -0.225 1.225 29 C 0.001 3.999 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.046 0.954 49 H 0.023 0.977 50 H 0.056 0.944 51 H 0.054 0.946 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.843 20.642 2.688 21.912 hybrid contribution -0.871 -1.311 0.166 1.583 sum 5.972 19.331 2.854 20.433 Atomic orbital electron populations 1.22046 0.78321 1.04774 1.01750 1.47737 1.07713 1.04974 1.71453 1.20376 0.87191 0.85083 0.74842 1.90565 1.14982 1.87452 1.52439 1.21739 1.01950 0.89172 1.04884 1.23077 1.02354 0.99119 0.90572 0.88166 1.22047 0.95238 0.92629 1.02050 1.21271 0.96664 0.96870 1.00133 1.20337 0.95293 1.00521 0.99129 1.21613 0.97061 0.99837 0.97043 1.21923 1.00467 0.97952 0.93847 1.20519 0.93505 0.99932 0.99404 1.21138 0.95769 0.95370 1.01825 0.86965 1.22052 0.96477 0.82981 0.95680 0.87805 1.23112 0.98886 0.98823 0.97240 1.20919 0.92998 0.96312 0.83349 1.44749 1.17929 1.69150 1.02223 1.19360 0.95789 1.31292 0.90180 0.90270 1.25492 1.00684 1.01899 0.96796 1.70169 1.30271 1.50737 1.08191 0.85109 0.79298 0.77141 0.78343 1.19347 1.21733 1.22471 1.21959 0.88913 0.93732 0.95320 0.93514 0.89510 0.89973 0.84657 0.90913 0.90159 0.90535 0.90819 0.92450 0.93490 0.91817 0.93540 0.90510 0.91744 0.92746 0.92167 0.90973 0.90072 0.95422 0.97694 0.94417 0.94648 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.53 8.27 127.77 1.06 3.59 16 2 N -0.59 -20.26 2.91 -814.84 -2.37 -22.63 16 3 C 0.53 17.43 7.42 87.66 0.65 18.08 16 4 O -0.57 -21.40 13.37 -3.03 -0.04 -21.44 16 5 C -0.16 -3.87 4.48 -13.12 -0.06 -3.93 16 6 C -0.13 -2.79 4.16 -10.31 -0.04 -2.84 16 7 H 0.10 2.49 5.48 -2.38 -0.01 2.48 16 8 C -0.08 -1.27 6.17 31.76 0.20 -1.08 16 9 C -0.11 -1.49 5.43 29.99 0.16 -1.33 16 10 C -0.12 -1.72 4.44 28.79 0.13 -1.60 16 11 C -0.12 -2.11 5.38 30.49 0.16 -1.94 16 12 C -0.10 -1.82 5.68 31.46 0.18 -1.64 16 13 C -0.10 -2.18 5.08 29.65 0.15 -2.03 16 14 C -0.12 -2.60 3.76 -12.41 -0.05 -2.64 16 15 H 0.11 1.95 7.18 -2.39 -0.02 1.93 16 16 C 0.13 4.88 3.66 46.38 0.17 5.05 16 17 H 0.10 3.76 7.02 -2.39 -0.02 3.74 16 18 C -0.14 -5.34 6.48 31.78 0.21 -5.13 16 19 C 0.19 8.97 4.33 86.73 0.38 9.34 16 20 N -0.61 -29.89 1.87 -691.99 -1.30 -31.19 16 21 C -0.24 -12.64 9.79 84.03 0.82 -11.82 16 22 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 23 C -0.06 -2.98 5.49 84.86 0.47 -2.52 16 24 N -0.94 -54.16 10.31 21.65 0.22 -53.93 16 25 Si 0.97 44.18 29.55 68.60 2.03 46.21 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 29 C 0.13 5.20 6.40 86.86 0.56 5.75 16 30 H 0.05 1.59 7.90 -2.39 -0.02 1.57 16 31 H 0.09 3.70 4.74 -2.39 -0.01 3.69 16 32 H 0.08 2.33 6.66 -2.38 -0.02 2.32 16 33 H 0.14 2.94 7.30 -2.39 -0.02 2.92 16 34 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.97 4.56 -2.39 -0.01 0.96 16 38 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 39 H 0.05 0.75 7.84 -2.39 -0.02 0.74 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 1.04 5.22 -2.38 -0.01 1.03 16 42 H 0.08 1.11 6.33 -2.39 -0.02 1.10 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.78 5.54 -2.39 -0.01 1.76 16 46 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 48 H 0.03 1.43 6.35 -2.39 -0.02 1.41 16 49 H 0.00 0.26 7.50 -2.38 -0.02 0.24 16 50 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 51 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -62.10 371.04 4.58 -57.52 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.90 Total: 22.12 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.13 Total: 3.34 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.44 Total: -107.75 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.04 Total: -21.44 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -62.10 4.58 -57.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033447358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.967 kcal (2) G-P(sol) polarization free energy of solvation -62.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds