Wall clock time and date at job start Tue Mar 31 2020 13:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47298 * 2 1 4 4 C 1.53000 * 109.46704 * 119.99803 * 2 1 3 5 5 H 1.09004 * 109.57833 * 301.22316 * 4 2 1 6 6 C 1.50457 * 109.57782 * 61.60712 * 4 2 1 7 7 C 1.54293 * 113.03628 * 211.96417 * 6 4 2 8 8 C 1.54064 * 112.28800 * 318.30163 * 7 6 4 9 9 N 1.44278 * 111.98108 * 318.91149 * 8 7 6 10 10 C 1.38572 * 110.99892 * 219.30865 * 9 8 7 11 11 N 1.31228 * 126.47222 * 238.04496 * 10 9 8 12 12 N 1.28529 * 109.85527 * 179.97438 * 11 10 9 13 13 C 1.30293 * 110.05897 * 359.97438 * 12 11 10 14 14 C 1.50697 * 126.34543 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47351 * 270.04013 * 14 13 12 16 16 C 1.50698 * 109.46974 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00495 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99735 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00502 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99766 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47145 * 60.00329 * 20 18 16 22 22 H 1.48503 * 109.46883 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47095 * 300.00124 * 20 18 16 24 24 N 1.36452 * 126.47328 * 58.02522 * 10 9 8 25 25 C 1.46494 * 127.13668 * 359.97438 * 24 10 9 26 26 C 1.47807 * 109.45798 * 96.43697 * 9 8 7 27 27 C 1.45860 * 112.91765 * 276.73662 * 26 9 8 28 28 H 1.09003 * 109.47505 * 293.41248 * 1 2 3 29 29 H 1.09007 * 109.46768 * 53.40470 * 1 2 3 30 30 H 1.08996 * 109.47377 * 173.41049 * 1 2 3 31 31 H 1.08999 * 109.47180 * 239.99629 * 2 1 3 32 32 H 1.09000 * 109.47018 * 299.99753 * 3 2 1 33 33 H 1.08999 * 109.47308 * 59.99707 * 3 2 1 34 34 H 1.08999 * 109.47221 * 179.97438 * 3 2 1 35 35 H 1.09001 * 108.76779 * 332.88108 * 6 4 2 36 36 H 1.09000 * 108.77422 * 91.16337 * 6 4 2 37 37 H 1.09000 * 108.92139 * 79.02417 * 7 6 4 38 38 H 1.08998 * 108.91704 * 197.57599 * 7 6 4 39 39 H 1.09002 * 108.98105 * 198.27695 * 8 7 6 40 40 H 1.09000 * 108.97846 * 79.55683 * 8 7 6 41 41 H 1.08998 * 109.47197 * 30.04997 * 14 13 12 42 42 H 1.09007 * 109.46631 * 150.04142 * 14 13 12 43 43 H 1.08992 * 109.47381 * 300.00422 * 15 14 13 44 44 H 1.09002 * 109.46742 * 60.00679 * 15 14 13 45 45 H 0.96994 * 120.00064 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.47027 * 90.00381 * 25 24 10 47 47 H 1.08997 * 109.47294 * 210.00197 * 25 24 10 48 48 H 1.09003 * 109.47395 * 330.00346 * 25 24 10 49 49 H 1.09000 * 108.79496 * 37.62832 * 26 9 8 50 50 H 1.08998 * 108.79171 * 155.96709 * 26 9 8 51 51 H 1.09007 * 109.05611 * 181.87239 * 27 26 9 52 52 H 1.08998 * 109.06173 * 300.78949 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6597 -0.2215 2.1403 6 6 1.5723 -2.1512 1.2320 7 6 1.3205 -2.7212 2.6435 8 6 2.4110 -2.2998 3.6470 9 7 3.7300 -2.3528 3.0649 10 6 4.6550 -2.8396 3.9746 11 7 5.7387 -2.2264 4.3892 12 7 6.3645 -2.9679 5.2321 13 6 5.7224 -4.0885 5.4044 14 6 6.1302 -5.2211 6.3110 15 6 7.0176 -6.1989 5.5381 16 6 7.4257 -7.3312 6.4450 17 1 7.0859 -7.3517 7.4699 18 6 8.2323 -8.3416 5.9658 19 7 8.6458 -8.3171 4.7176 20 14 8.7377 -9.7456 7.0897 21 1 7.5252 -10.4533 7.5736 22 1 9.5991 -10.6945 6.3396 23 1 9.4911 -9.2046 8.2495 24 7 4.6110 -4.0470 4.6089 25 6 3.5848 -5.0830 4.4682 26 6 4.1128 -1.0068 2.5891 27 6 3.5848 -0.7013 1.2642 28 1 -0.3634 0.4083 0.9431 29 1 -0.3633 0.6127 -0.8251 30 1 -0.3634 -1.0208 -0.1179 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4424 0.0005 35 1 0.6467 -2.2106 0.6595 36 1 2.3289 -2.7617 0.7390 37 1 0.3544 -2.3651 3.0013 38 1 1.2947 -3.8093 2.5858 39 1 2.3767 -2.9667 4.5085 40 1 2.2113 -1.2815 3.9805 41 1 6.6827 -4.8241 7.1625 42 1 5.2401 -5.7408 6.6659 43 1 6.4650 -6.5959 4.6867 44 1 7.9076 -5.6792 5.1834 45 1 9.2134 -9.0278 4.3808 46 1 3.8637 -5.7637 3.6638 47 1 3.4997 -5.6392 5.4017 48 1 2.6276 -4.6169 4.2344 49 1 3.7394 -0.2653 3.2955 50 1 5.2003 -0.9424 2.5554 51 1 3.9308 0.2874 0.9625 52 1 3.9571 -1.4393 0.5538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121400678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:18 Heat of formation + Delta-G solvation = 51.788178 kcal Electronic energy + Delta-G solvation = -28001.437585 eV Core-core repulsion = 24422.152025 eV Total energy + Delta-G solvation = -3579.285560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.05410 -40.77863 -37.78213 -36.43422 -35.62045 -34.03869 -33.63201 -32.71143 -30.25429 -28.86332 -28.18232 -27.27204 -26.88360 -25.68321 -23.79077 -23.22146 -22.01566 -21.25706 -21.09425 -20.32736 -18.66330 -18.30754 -17.49907 -17.20756 -16.54551 -16.45001 -16.09807 -15.74344 -15.45156 -15.21408 -14.96438 -14.88192 -14.49436 -14.33857 -14.23628 -13.84118 -13.70227 -13.31056 -13.16507 -13.03539 -12.90402 -12.82727 -12.70387 -12.62695 -12.48377 -12.31367 -12.09806 -11.97877 -11.81302 -11.76732 -11.66039 -11.44881 -11.31502 -11.19905 -11.13728 -11.05650 -10.82823 -10.70642 -10.56668 -9.23159 -8.20018 -6.32944 0.78314 1.23830 1.43249 1.46873 1.54380 1.79647 2.42150 2.59257 3.13976 3.46900 3.61264 3.64194 3.73665 3.82486 3.95149 4.04362 4.13873 4.20323 4.23595 4.27170 4.32201 4.35808 4.44742 4.55795 4.63949 4.67243 4.68015 4.73879 4.76234 4.81325 4.88338 4.90511 4.92216 4.98398 5.07565 5.13663 5.14546 5.16156 5.23352 5.32261 5.38232 5.41197 5.43886 5.49898 5.53380 5.59006 5.63250 5.67574 5.78314 5.81504 6.14652 6.19871 6.83207 7.37220 7.75131 8.91959 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.002431 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.604540 B =11513.901092 C =11747.929722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.072 4.072 5 H 0.072 0.928 6 C -0.112 4.112 7 C -0.102 4.102 8 C 0.042 3.958 9 N -0.433 5.433 10 C 0.352 3.648 11 N -0.362 5.362 12 N -0.333 5.333 13 C 0.195 3.805 14 C -0.013 4.013 15 C 0.043 3.957 16 C -0.539 4.539 17 H 0.074 0.926 18 C -0.001 4.001 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.288 1.288 23 H -0.267 1.267 24 N -0.481 5.481 25 C 0.067 3.933 26 C 0.072 3.928 27 C -0.113 4.113 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.098 0.902 43 H -0.007 1.007 44 H -0.020 1.020 45 H 0.263 0.737 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.055 0.945 50 H 0.064 0.936 51 H 0.091 0.909 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.174 15.123 -7.916 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.090 4.090 5 H 0.090 0.910 6 C -0.149 4.149 7 C -0.141 4.141 8 C -0.085 4.085 9 N -0.157 5.157 10 C -0.005 4.005 11 N -0.207 5.207 12 N -0.171 5.171 13 C -0.075 4.075 14 C -0.053 4.053 15 C 0.005 3.995 16 C -0.577 4.577 17 H 0.092 0.908 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.794 3.206 21 H -0.184 1.184 22 H -0.214 1.214 23 H -0.192 1.192 24 N -0.176 5.176 25 C -0.074 4.074 26 C -0.054 4.054 27 C -0.150 4.150 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.011 0.989 44 H -0.002 1.002 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.125 0.875 48 H 0.136 0.864 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.109 0.891 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.082 15.785 -8.318 28.390 hybrid contribution 0.157 -1.349 0.564 1.470 sum -21.925 14.436 -7.754 27.372 Atomic orbital electron populations 1.21884 0.94578 1.01972 1.01909 1.21102 0.96127 0.95999 0.97473 1.21933 1.01168 0.95857 1.01863 1.20959 0.93490 0.96042 0.98518 0.91000 1.21384 1.01713 0.95344 0.96455 1.21952 0.96493 1.01273 0.94337 1.22385 0.86266 1.02299 0.97536 1.58491 1.00594 1.27022 1.29617 1.22912 0.96976 0.85609 0.94989 1.74383 1.07464 1.25442 1.13386 1.73860 1.24968 1.03238 1.15003 1.25304 0.86061 0.98422 0.97685 1.20132 1.00845 0.89372 0.94939 1.18823 0.93064 0.92784 0.94823 1.21571 1.30895 1.06887 0.98332 0.90768 1.26035 0.95899 1.01393 0.96581 1.70124 1.36016 1.34698 1.16756 0.85430 0.78646 0.78107 0.78435 1.18387 1.21385 1.19227 1.46184 1.21714 1.15395 1.34318 1.22474 0.89852 0.89624 1.05429 1.21008 1.01384 0.84693 0.98280 1.20804 0.96604 1.02611 0.95012 0.92542 0.92551 0.92067 0.91633 0.92453 0.92638 0.92473 0.90370 0.93290 0.89275 0.91362 0.91518 0.91761 0.89356 0.88322 0.98867 1.00206 0.92809 0.90388 0.87540 0.86404 0.92704 0.91746 0.89053 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.80 71.98 0.63 -0.71 16 2 C -0.09 -0.98 2.47 -10.80 -0.03 -1.01 16 3 C -0.15 -1.62 8.88 71.98 0.64 -0.98 16 4 C -0.07 -0.93 1.44 -11.10 -0.02 -0.95 16 5 H 0.07 0.92 7.17 -2.38 -0.02 0.91 16 6 C -0.11 -1.48 4.85 30.21 0.15 -1.34 16 7 C -0.10 -1.30 6.10 31.39 0.19 -1.11 16 8 C 0.04 0.77 4.30 87.15 0.37 1.14 16 9 N -0.43 -10.95 4.27 -720.80 -3.08 -14.03 16 10 C 0.35 12.10 7.01 260.11 1.82 13.93 16 11 N -0.36 -15.16 10.79 -58.00 -0.63 -15.78 16 12 N -0.33 -15.34 12.18 -49.54 -0.60 -15.94 16 13 C 0.19 8.05 7.32 137.64 1.01 9.06 16 14 C -0.01 -0.55 5.53 29.85 0.16 -0.38 16 15 C 0.04 2.31 4.96 29.85 0.15 2.46 16 16 C -0.54 -29.78 9.11 25.60 0.23 -29.54 16 17 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 18 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 19 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 20 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 N -0.48 -16.36 3.10 -538.20 -1.67 -18.02 16 25 C 0.07 1.61 10.64 127.77 1.36 2.97 16 26 C 0.07 1.68 4.67 83.94 0.39 2.07 16 27 C -0.11 -1.94 4.85 28.92 0.14 -1.80 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 0.52 6.32 -2.39 -0.02 0.51 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.65 6.07 -2.39 -0.01 0.63 16 35 H 0.08 0.84 5.62 -2.39 -0.01 0.82 16 36 H 0.05 0.85 7.38 -2.39 -0.02 0.84 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.85 7.71 -2.39 -0.02 0.83 16 39 H 0.07 1.25 5.25 -2.39 -0.01 1.24 16 40 H 0.06 1.09 6.51 -2.39 -0.02 1.08 16 41 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.10 3.44 7.27 -2.38 -0.02 3.43 16 43 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H -0.02 -1.27 8.14 -2.39 -0.02 -1.28 16 45 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 46 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.11 2.25 7.25 -2.39 -0.02 2.23 16 48 H 0.12 2.00 4.98 -2.39 -0.01 1.99 16 49 H 0.05 1.19 7.24 -2.39 -0.02 1.17 16 50 H 0.06 1.88 7.01 -2.39 -0.02 1.87 16 51 H 0.09 1.36 5.67 -2.38 -0.01 1.35 16 52 H 0.06 1.19 7.59 -2.39 -0.02 1.17 16 Total: -1.00 -73.60 387.38 4.91 -68.69 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.90 Total: 12.62 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 7.68 Total: -5.81 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.69 Total: -120.99 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.60 4.91 -68.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121400678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.482 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds