Wall clock time and date at job start Tue Mar 31 2020 13:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 C 1.53005 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.33516 * 54.19690 * 4 3 2 6 6 C 1.54904 * 110.37268 * 176.45596 * 4 3 2 7 7 C 1.55143 * 101.68431 * 155.87912 * 6 4 3 8 8 C 1.54354 * 102.99982 * 324.39260 * 7 6 4 9 9 N 1.47439 * 107.25080 * 22.23089 * 8 7 6 10 10 C 1.38580 * 111.00052 * 123.28928 * 9 8 7 11 11 N 1.31220 * 126.47318 * 239.18292 * 10 9 8 12 12 N 1.28529 * 109.85930 * 179.97438 * 11 10 9 13 13 C 1.30292 * 110.05577 * 359.97438 * 12 11 10 14 14 C 1.50704 * 126.34950 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46715 * 89.97626 * 14 13 12 16 16 C 1.53004 * 109.46805 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46976 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00015 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99870 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99759 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00062 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46940 * 89.99561 * 21 19 17 23 23 H 1.48489 * 109.47158 * 209.99735 * 21 19 17 24 24 H 1.48497 * 109.47037 * 329.99985 * 21 19 17 25 25 N 1.36456 * 126.47476 * 58.86768 * 10 9 8 26 26 C 1.46507 * 127.13465 * 0.03936 * 25 10 9 27 27 C 1.52997 * 109.46879 * 89.99836 * 26 25 10 28 28 H 1.09002 * 109.47246 * 300.00363 * 1 2 3 29 29 H 1.09006 * 109.47340 * 59.99848 * 1 2 3 30 30 H 1.08998 * 109.47556 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47165 * 240.00044 * 2 1 3 32 32 H 1.09006 * 109.47340 * 120.00152 * 2 1 3 33 33 H 1.09001 * 109.46818 * 60.00273 * 3 2 1 34 34 H 1.08991 * 109.47297 * 299.99907 * 3 2 1 35 35 H 1.09002 * 110.99035 * 273.99093 * 6 4 3 36 36 H 1.08995 * 110.99272 * 37.76982 * 6 4 3 37 37 H 1.09003 * 110.70341 * 82.75307 * 7 6 4 38 38 H 1.09005 * 110.70326 * 205.97631 * 7 6 4 39 39 H 1.09001 * 109.85687 * 262.82973 * 8 7 6 40 40 H 1.09007 * 110.04317 * 141.73224 * 8 7 6 41 41 H 1.09000 * 109.47254 * 209.97520 * 14 13 12 42 42 H 1.09003 * 109.47011 * 329.98180 * 14 13 12 43 43 H 1.09000 * 109.47173 * 299.99944 * 15 14 13 44 44 H 1.08997 * 109.47490 * 60.00092 * 15 14 13 45 45 H 1.09000 * 109.47190 * 299.99910 * 16 15 14 46 46 H 1.09003 * 109.46984 * 60.00515 * 16 15 14 47 47 H 0.97001 * 119.99346 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.46826 * 209.99762 * 26 25 10 49 49 H 1.08998 * 109.47093 * 329.99956 * 26 25 10 50 50 H 1.08998 * 109.47160 * 60.00161 * 27 26 25 51 51 H 1.09001 * 109.47015 * 179.97438 * 27 26 25 52 52 H 1.09001 * 109.47331 * 299.99617 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9491 0.8445 -0.8280 6 6 4.1093 2.8918 -0.0891 7 6 5.5183 2.7425 0.5428 8 6 5.2928 1.6903 1.6494 9 7 4.0841 0.9273 1.2876 10 6 4.3586 -0.4285 1.2056 11 7 4.2008 -1.1941 0.1517 12 7 4.5541 -2.3982 0.4297 13 6 4.9554 -2.4716 1.6671 14 6 5.4498 -3.7074 2.3740 15 6 6.9644 -3.8267 2.1933 16 6 7.4662 -5.0816 2.9104 17 6 8.9580 -5.1995 2.7320 18 1 9.4945 -4.4537 2.1643 19 6 9.6380 -6.2590 3.2944 20 7 10.9399 -6.3615 3.1390 21 14 8.7100 -7.5485 4.2769 22 1 8.2659 -8.6372 3.3697 23 1 9.6014 -8.1093 5.3237 24 1 7.5250 -6.9243 4.9181 25 7 4.8498 -1.2185 2.2040 26 6 5.1905 -0.8094 3.5690 27 6 3.9635 -0.9659 4.4694 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 4.1793 3.2188 -1.1266 36 1 3.4909 3.5753 0.4927 37 1 6.2346 2.3791 -0.1941 38 1 5.8508 3.6881 0.9712 39 1 5.1445 2.1872 2.6081 40 1 6.1505 1.0201 1.7081 41 1 5.2150 -3.6369 3.4360 42 1 4.9632 -4.5866 1.9517 43 1 7.1992 -3.8971 1.1312 44 1 7.4511 -2.9475 2.6154 45 1 7.2314 -5.0116 3.9725 46 1 6.9796 -5.9607 2.4878 47 1 11.4182 -7.1071 3.5344 48 1 5.9994 -1.4360 3.9448 49 1 5.5091 0.2329 3.5670 50 1 3.6449 -2.0083 4.4714 51 1 4.2171 -0.6620 5.4850 52 1 3.1546 -0.3394 4.0936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121783460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:16 Heat of formation + Delta-G solvation = 42.507594 kcal Electronic energy + Delta-G solvation = -28261.955614 eV Core-core repulsion = 24682.267617 eV Total energy + Delta-G solvation = -3579.687996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.07188 -40.40246 -37.06980 -36.46502 -35.50720 -34.55252 -33.31283 -31.64844 -30.92340 -30.78937 -28.67272 -26.61059 -25.59222 -24.86288 -23.41706 -22.85425 -22.02262 -21.86431 -21.32498 -20.67505 -18.93059 -18.40023 -17.74887 -17.19056 -16.50814 -16.36130 -15.96994 -15.81769 -15.52985 -15.02613 -14.81018 -14.75826 -14.70743 -14.24015 -14.09903 -13.94544 -13.67000 -13.50976 -13.31100 -13.20043 -13.12632 -12.81263 -12.75751 -12.58998 -12.45199 -12.41909 -12.11317 -12.00123 -11.79801 -11.77587 -11.62697 -11.56536 -11.52000 -11.45322 -11.35264 -11.29951 -11.08443 -10.75572 -10.59865 -9.23423 -8.28469 -6.33467 0.77367 1.26696 1.39462 1.40921 1.52817 1.80845 2.38177 2.65707 3.07419 3.31413 3.43629 3.56712 3.64219 3.91592 3.94495 3.94984 4.02070 4.15386 4.18213 4.25705 4.26972 4.30739 4.37419 4.44266 4.48706 4.55454 4.56278 4.67794 4.72302 4.79365 4.82116 4.88546 4.91506 4.94339 4.97148 5.01283 5.03392 5.06973 5.08012 5.12731 5.16741 5.26394 5.29686 5.36204 5.44412 5.51358 5.54478 5.57497 5.66196 5.71017 6.20872 6.28573 6.74607 7.31155 7.78069 8.88743 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002904 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.570935 B = 9641.180032 C =10121.778458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.091 4.091 4 C 0.075 3.925 5 H 0.057 0.943 6 C -0.114 4.114 7 C -0.136 4.136 8 C 0.036 3.964 9 N -0.434 5.434 10 C 0.357 3.643 11 N -0.351 5.351 12 N -0.327 5.327 13 C 0.187 3.813 14 C -0.024 4.024 15 C -0.081 4.081 16 C -0.008 4.008 17 C -0.534 4.534 18 H 0.024 0.976 19 C 0.001 3.999 20 N -0.955 5.955 21 Si 0.955 3.045 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.235 1.235 25 N -0.476 5.476 26 C 0.092 3.908 27 C -0.157 4.157 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.042 0.958 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.035 0.965 44 H 0.048 0.952 45 H 0.035 0.965 46 H 0.023 0.977 47 H 0.266 0.734 48 H 0.101 0.899 49 H 0.111 0.889 50 H 0.054 0.946 51 H 0.104 0.896 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.576 22.535 1.454 30.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.129 4.129 4 C -0.032 4.032 5 H 0.076 0.924 6 C -0.152 4.152 7 C -0.174 4.174 8 C -0.091 4.091 9 N -0.159 5.159 10 C 0.000 4.000 11 N -0.195 5.195 12 N -0.166 5.166 13 C -0.082 4.082 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.045 4.045 17 C -0.572 4.572 18 H 0.042 0.958 19 C -0.195 4.195 20 N -0.596 5.596 21 Si 0.777 3.223 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.158 1.158 25 N -0.171 5.171 26 C -0.029 4.029 27 C -0.215 4.215 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.061 0.939 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.041 0.959 47 H 0.075 0.925 48 H 0.120 0.880 49 H 0.129 0.871 50 H 0.073 0.927 51 H 0.122 0.878 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.157 22.120 0.492 30.613 hybrid contribution 1.405 -0.864 0.753 1.813 sum -19.752 21.256 1.246 29.043 Atomic orbital electron populations 1.21735 0.95036 1.01163 1.02311 1.21376 0.95956 0.97326 1.00242 1.21502 0.91987 0.96244 1.03167 1.22825 0.96795 0.96116 0.87434 0.92446 1.22791 0.95414 0.94068 1.02955 1.22780 0.97808 0.99753 0.97051 1.23165 0.88565 0.95497 1.01859 1.60476 1.28072 0.94591 1.32749 1.22923 0.98828 0.92938 0.85330 1.74438 1.25057 0.98042 1.22000 1.73896 1.16969 1.13138 1.12599 1.25020 1.03109 0.88101 0.92017 1.20158 0.95694 0.90369 1.00120 1.21215 0.92617 0.98552 0.99615 1.19514 0.93619 0.94642 0.96763 1.21483 0.93525 1.09257 1.32972 0.95776 1.26097 0.95623 1.00487 0.97332 1.70092 1.09528 1.32758 1.47228 0.85597 0.79420 0.78701 0.78569 1.19504 1.21154 1.15781 1.46441 1.50003 1.07608 1.13072 1.22276 1.00242 1.03495 0.76853 1.22062 0.96443 1.02597 1.00366 0.92188 0.91599 0.93980 0.93853 0.95226 0.90525 0.89491 0.88836 0.88260 0.92333 0.87309 0.86729 0.93922 0.87729 0.88332 0.94564 0.93307 0.94691 0.95895 0.92526 0.88043 0.87115 0.92651 0.87762 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.91 71.98 0.71 -1.91 16 2 C -0.11 -2.54 4.70 30.59 0.14 -2.39 16 3 C -0.09 -1.55 4.92 30.60 0.15 -1.40 16 4 C 0.08 1.43 2.39 45.39 0.11 1.54 16 5 H 0.06 1.47 6.92 -2.39 -0.02 1.46 16 6 C -0.11 -1.33 6.49 31.98 0.21 -1.13 16 7 C -0.14 -1.70 6.95 31.79 0.22 -1.48 16 8 C 0.04 0.57 5.21 86.66 0.45 1.03 16 9 N -0.43 -9.12 4.79 -672.23 -3.22 -12.33 16 10 C 0.36 10.18 5.39 260.11 1.40 11.58 16 11 N -0.35 -12.41 9.18 -58.00 -0.53 -12.94 16 12 N -0.33 -12.65 12.18 -49.54 -0.60 -13.25 16 13 C 0.19 6.18 7.32 137.64 1.01 7.19 16 14 C -0.02 -0.74 5.43 29.85 0.16 -0.58 16 15 C -0.08 -3.18 5.14 30.60 0.16 -3.02 16 16 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 17 C -0.53 -31.00 9.66 25.60 0.25 -30.75 16 18 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 19 C 0.00 0.05 5.47 84.65 0.46 0.51 16 20 N -0.96 -60.56 13.96 21.45 0.30 -60.26 16 21 Si 0.95 43.52 27.47 68.60 1.88 45.41 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.23 -9.51 6.54 99.48 0.65 -8.86 16 25 N -0.48 -13.01 2.75 -514.84 -1.41 -14.42 16 26 C 0.09 1.75 6.37 86.38 0.55 2.30 16 27 C -0.16 -2.41 10.24 71.98 0.74 -1.67 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.04 1.20 7.88 -2.38 -0.02 1.18 16 32 H 0.03 0.83 6.45 -2.38 -0.02 0.82 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.82 8.06 -2.39 -0.02 0.80 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.11 1.27 7.94 -2.39 -0.02 1.25 16 40 H 0.04 0.86 6.96 -2.38 -0.02 0.85 16 41 H 0.10 2.64 7.95 -2.39 -0.02 2.63 16 42 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 46 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 47 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 48 H 0.10 1.94 7.90 -2.39 -0.02 1.92 16 49 H 0.11 1.67 5.85 -2.39 -0.01 1.65 16 50 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -76.11 401.66 4.07 -72.04 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.81 Total: 16.17 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 6.84 Total: -20.42 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -5.47 Total: -113.20 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.41 kcal Total: -76.11 4.07 -72.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121783460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.552 kcal (2) G-P(sol) polarization free energy of solvation -76.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds