Wall clock time and date at job start Tue Mar 31 2020 12:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 120.00296 * 2 1 4 4 H 1.07996 * 119.99937 * 190.86282 * 3 2 1 5 5 C 1.38810 * 119.99604 * 10.86525 * 3 2 1 6 6 N 1.31617 * 120.00561 * 12.44866 * 5 3 2 7 7 Si 1.86807 * 119.99761 * 192.45191 * 5 3 2 8 8 H 1.48499 * 109.47301 * 89.99845 * 7 5 3 9 9 H 1.48501 * 109.46921 * 210.00257 * 7 5 3 10 10 H 1.48501 * 109.46735 * 329.99810 * 7 5 3 11 11 C 1.46496 * 119.99580 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47616 * 84.90638 * 11 2 1 13 13 H 1.08997 * 109.69762 * 301.60103 * 12 11 2 14 14 C 1.53625 * 109.66200 * 62.18996 * 12 11 2 15 15 C 1.53035 * 109.23912 * 174.55384 * 14 12 11 16 16 C 1.53039 * 109.54043 * 298.50777 * 15 14 12 17 17 C 1.53199 * 109.30801 * 61.36911 * 16 15 14 18 18 N 1.46917 * 109.58868 * 181.24230 * 12 11 2 19 19 C 1.34776 * 120.63113 * 6.62836 * 18 12 11 20 20 O 1.21279 * 120.00006 * 354.72586 * 19 18 12 21 21 C 1.50709 * 119.99940 * 174.72768 * 19 18 12 22 22 C 1.52999 * 109.46914 * 180.02562 * 21 19 18 23 23 H 1.08991 * 109.35925 * 54.99927 * 22 21 19 24 24 C 1.50072 * 109.24478 * 295.33845 * 22 21 19 25 25 C 1.29437 * 124.07673 * 222.73382 * 24 22 21 26 26 C 1.50067 * 124.07827 * 0.46971 * 25 24 22 27 27 C 1.53022 * 110.14513 * 342.87232 * 26 25 24 28 28 C 1.53023 * 109.35596 * 174.72632 * 22 21 19 29 29 H 1.09001 * 109.47284 * 174.88908 * 1 2 3 30 30 H 1.09004 * 109.46743 * 294.89346 * 1 2 3 31 31 H 1.09000 * 109.46966 * 54.89016 * 1 2 3 32 32 H 0.97000 * 120.00191 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47549 * 324.90382 * 11 2 1 34 34 H 1.09005 * 109.47118 * 204.90195 * 11 2 1 35 35 H 1.09002 * 109.63590 * 54.56169 * 14 12 11 36 36 H 1.09004 * 109.45626 * 294.43692 * 14 12 11 37 37 H 1.09006 * 109.46475 * 178.48970 * 15 14 12 38 38 H 1.09004 * 109.45452 * 58.52474 * 15 14 12 39 39 H 1.08998 * 109.49938 * 301.41762 * 16 15 14 40 40 H 1.08998 * 109.52942 * 181.33243 * 16 15 14 41 41 H 1.09003 * 109.58269 * 185.58373 * 17 16 15 42 42 H 1.08992 * 109.70697 * 65.22099 * 17 16 15 43 43 H 1.08995 * 109.47126 * 59.99786 * 21 19 18 44 44 H 1.09003 * 109.46760 * 299.99928 * 21 19 18 45 45 H 1.08006 * 117.95753 * 42.71516 * 24 22 21 46 46 H 1.07999 * 117.95948 * 180.49552 * 25 24 22 47 47 H 1.08994 * 109.35925 * 222.66216 * 26 25 24 48 48 H 1.09003 * 109.35338 * 103.07514 * 26 25 24 49 49 H 1.08995 * 109.63946 * 289.74752 * 27 26 25 50 50 H 1.08997 * 109.64157 * 169.11574 * 27 26 25 51 51 H 1.09004 * 109.63967 * 289.18478 * 28 22 21 52 52 H 1.08996 * 109.64740 * 49.81510 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2152 1.1942 -0.1763 5 6 1.4744 2.3772 0.2266 6 7 0.2390 2.3575 0.6802 7 14 2.3188 4.0087 -0.1124 8 1 2.0604 4.4176 -1.5164 9 1 1.7861 5.0429 0.8105 10 1 3.7814 3.8623 0.0994 11 6 2.1974 -1.2687 -0.0006 12 6 2.3415 -1.7739 -1.4376 13 1 1.3549 -1.8993 -1.8836 14 6 3.1586 -0.7662 -2.2603 15 6 3.4128 -1.3423 -3.6551 16 6 4.2231 -2.6349 -3.5352 17 6 3.4230 -3.6612 -2.7267 18 7 3.0497 -3.0611 -1.4385 19 6 3.3463 -3.6826 -0.2799 20 8 3.1146 -3.1362 0.7778 21 6 3.9659 -5.0563 -0.2987 22 6 4.1991 -5.5302 1.1372 23 1 3.2610 -5.4829 1.6901 24 6 5.2099 -4.6370 1.7949 25 6 6.1754 -5.0630 2.5444 26 6 6.4251 -6.5104 2.8523 27 6 5.1801 -7.3400 2.5307 28 6 4.7048 -6.9743 1.1188 29 1 -0.3634 -1.0236 -0.0915 30 1 -0.3633 0.4326 0.9322 31 1 -0.3633 0.5911 -0.8407 32 1 -0.2328 3.1900 0.8389 33 1 1.6509 -2.0041 0.5900 34 1 3.1864 -1.1176 0.4322 35 1 4.1113 -0.5766 -1.7658 36 1 2.6021 0.1670 -2.3479 37 1 3.9694 -0.6188 -4.2510 38 1 2.4596 -1.5548 -4.1394 39 1 5.1658 -2.4278 -3.0286 40 1 4.4244 -3.0325 -4.5299 41 1 4.0343 -4.5469 -2.5537 42 1 2.5229 -3.9396 -3.2746 43 1 4.9177 -5.0183 -0.8283 44 1 3.2954 -5.7503 -0.8057 45 1 5.1267 -3.5725 1.6325 46 1 6.8426 -4.3312 2.9753 47 1 6.6680 -6.6182 3.9093 48 1 7.2623 -6.8680 2.2528 49 1 4.3940 -7.1154 3.2516 50 1 5.4263 -8.4010 2.5711 51 1 3.8965 -7.6418 0.8200 52 1 5.5351 -7.0630 0.4183 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158113691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:41 Heat of formation + Delta-G solvation = -12.587340 kcal Electronic energy + Delta-G solvation = -28816.036432 eV Core-core repulsion = 25201.666589 eV Total energy + Delta-G solvation = -3614.369843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61563 -39.57343 -38.18020 -37.33151 -34.30063 -33.71785 -33.16269 -31.84650 -31.63882 -28.61306 -28.03999 -27.46399 -25.50880 -24.18310 -23.24455 -23.00875 -21.98385 -21.57200 -19.76911 -18.80595 -18.77301 -17.72432 -17.15445 -16.83220 -16.55552 -16.39960 -15.55711 -15.39040 -15.21961 -15.08268 -14.91418 -14.80017 -14.49920 -14.22760 -14.01969 -13.80182 -13.58334 -13.46408 -13.33355 -13.14453 -12.92982 -12.84217 -12.69775 -12.58818 -12.37405 -12.20832 -12.12254 -11.99945 -11.86078 -11.70893 -11.65814 -11.50833 -11.33566 -11.29878 -10.94271 -10.69678 -10.08794 -9.84058 -9.40000 -8.83810 -7.70865 -5.20553 1.42701 1.44211 1.44626 1.52997 1.79341 2.09994 2.52491 3.31786 3.60415 3.76734 3.84068 3.89405 3.94867 3.99269 4.02001 4.11087 4.19828 4.32493 4.38898 4.40119 4.48601 4.56329 4.57415 4.66104 4.71988 4.74804 4.78918 4.81479 4.84809 4.91846 4.93362 5.04526 5.07986 5.11044 5.13717 5.15724 5.19912 5.26148 5.27243 5.35504 5.43395 5.47308 5.51943 5.54292 5.61209 5.79473 5.81513 5.84518 6.13723 6.32946 6.63646 7.17619 7.38481 7.92425 8.32379 9.24806 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.003629 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.566260 B = 7713.767063 C = 8661.874423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.624 5.624 3 C -0.240 4.240 4 H 0.068 0.932 5 C -0.065 4.065 6 N -0.945 5.945 7 Si 0.967 3.033 8 H -0.283 1.283 9 H -0.295 1.295 10 H -0.273 1.273 11 C 0.181 3.819 12 C 0.136 3.864 13 H 0.055 0.945 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.127 4.127 17 C 0.102 3.898 18 N -0.609 5.609 19 C 0.495 3.505 20 O -0.570 6.570 21 C -0.119 4.119 22 C -0.041 4.041 23 H 0.062 0.938 24 C -0.151 4.151 25 C -0.169 4.169 26 C -0.087 4.087 27 C -0.122 4.122 28 C -0.107 4.107 29 H 0.017 0.983 30 H 0.033 0.967 31 H -0.001 1.001 32 H 0.244 0.756 33 H 0.045 0.955 34 H 0.030 0.970 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.124 0.876 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.050 0.950 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.809 -23.713 -8.058 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.348 5.348 3 C -0.370 4.370 4 H 0.086 0.914 5 C -0.258 4.258 6 N -0.594 5.594 7 Si 0.796 3.204 8 H -0.210 1.210 9 H -0.222 1.222 10 H -0.198 1.198 11 C 0.056 3.944 12 C 0.030 3.970 13 H 0.073 0.927 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.165 4.165 17 C -0.020 4.020 18 N -0.343 5.343 19 C 0.286 3.714 20 O -0.450 6.450 21 C -0.159 4.159 22 C -0.060 4.060 23 H 0.080 0.920 24 C -0.169 4.169 25 C -0.187 4.187 26 C -0.124 4.124 27 C -0.159 4.159 28 C -0.145 4.145 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.142 0.858 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.092 0.908 48 H 0.105 0.895 49 H 0.069 0.931 50 H 0.105 0.895 51 H 0.101 0.899 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.607 -23.314 -7.461 27.091 hybrid contribution -0.108 2.096 0.316 2.122 sum 11.498 -21.218 -7.145 25.169 Atomic orbital electron populations 1.20716 0.82708 0.93918 0.99497 1.44543 1.02325 1.02046 1.85926 1.19489 0.92487 0.85046 1.39960 0.91424 1.25627 0.97505 1.00975 1.01678 1.70311 1.12776 1.25235 1.51122 0.85241 0.77928 0.79888 0.77339 1.21027 1.22179 1.19834 1.21212 0.95023 0.85403 0.92808 1.21924 0.93843 0.82761 0.98461 0.92686 1.21789 0.98657 0.98256 0.96337 1.21536 1.00806 0.97974 0.95062 1.21897 0.98126 0.94849 1.01620 1.22068 1.00454 0.96806 0.82640 1.48460 1.57419 1.21137 1.07282 1.21542 0.78018 0.88918 0.82962 1.90788 1.54292 1.67354 1.32517 1.21787 1.03198 0.91997 0.98900 1.19825 0.97228 0.94897 0.94006 0.91990 1.22130 0.96494 0.99008 0.99275 1.22224 0.98608 0.98405 0.99471 1.20476 0.98917 0.91067 1.01922 1.21628 0.97112 1.00290 0.96868 1.21652 1.01790 0.93341 0.97687 0.96397 0.94868 0.98203 0.94616 0.93727 0.95174 0.94376 0.92817 0.91459 0.91551 0.92403 0.87611 0.86594 0.90078 0.86867 0.85845 0.90848 0.88956 0.90810 0.89549 0.93104 0.89505 0.89876 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.71 9.04 127.77 1.16 10.86 16 2 N -0.62 -34.54 2.69 -726.92 -1.95 -36.49 16 3 C -0.24 -14.11 8.23 84.03 0.69 -13.42 16 4 H 0.07 3.93 7.78 -2.91 -0.02 3.91 16 5 C -0.06 -3.86 5.32 84.86 0.45 -3.41 16 6 N -0.94 -59.10 9.96 21.65 0.22 -58.89 16 7 Si 0.97 47.80 29.57 68.60 2.03 49.83 16 8 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 9 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 11 C 0.18 8.71 3.51 86.38 0.30 9.01 16 12 C 0.14 5.10 3.20 45.12 0.14 5.25 16 13 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.11 -4.05 4.69 30.82 0.14 -3.91 16 15 C -0.12 -2.90 5.88 30.62 0.18 -2.72 16 16 C -0.13 -2.25 6.08 30.67 0.19 -2.07 16 17 C 0.10 1.75 6.33 86.36 0.55 2.30 16 18 N -0.61 -17.27 2.97 -794.21 -2.36 -19.62 16 19 C 0.50 14.82 7.24 87.66 0.63 15.46 16 20 O -0.57 -23.10 9.67 -3.03 -0.03 -23.13 16 21 C -0.12 -2.21 3.53 29.85 0.11 -2.10 16 22 C -0.04 -0.87 2.12 -11.73 -0.02 -0.90 16 23 H 0.06 1.64 7.95 -2.39 -0.02 1.62 16 24 C -0.15 -4.01 8.41 27.04 0.23 -3.78 16 25 C -0.17 -3.84 9.80 27.04 0.27 -3.57 16 26 C -0.09 -1.38 6.12 29.66 0.18 -1.20 16 27 C -0.12 -1.74 6.01 30.73 0.18 -1.56 16 28 C -0.11 -1.47 5.30 30.73 0.16 -1.31 16 29 H 0.02 0.86 7.90 -2.39 -0.02 0.84 16 30 H 0.03 2.02 6.43 -2.39 -0.02 2.01 16 31 H 0.00 -0.03 7.81 -2.39 -0.02 -0.05 16 32 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.04 2.27 6.27 -2.38 -0.01 2.25 16 34 H 0.03 1.59 6.99 -2.38 -0.02 1.57 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 2.34 6.99 -2.38 -0.02 2.32 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 1.20 5.96 -2.39 -0.01 1.18 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.11 1.60 7.48 -2.39 -0.02 1.58 16 44 H 0.12 1.51 8.11 -2.39 -0.02 1.49 16 45 H 0.07 2.53 6.49 -2.91 -0.02 2.51 16 46 H 0.09 2.14 8.06 -2.91 -0.02 2.11 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 50 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 Total: -1.00 -75.62 385.30 4.31 -71.31 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.86 Total: 14.04 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.54 Total: 2.94 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -4.09 Total: -115.00 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.03 Total: -23.13 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -75.62 4.31 -71.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158113691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.727 kcal (2) G-P(sol) polarization free energy of solvation -75.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds