Wall clock time and date at job start Tue Mar 31 2020 12:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36944 * 119.99761 * 2 1 4 4 H 1.08001 * 119.99871 * 174.22312 * 3 2 1 5 5 C 1.38802 * 120.00212 * 354.22127 * 3 2 1 6 6 N 1.31624 * 119.99953 * 5.10417 * 5 3 2 7 7 Si 1.86800 * 120.00233 * 185.10462 * 5 3 2 8 8 H 1.48497 * 109.47323 * 90.00124 * 7 5 3 9 9 H 1.48504 * 109.47372 * 210.00006 * 7 5 3 10 10 H 1.48501 * 109.47105 * 329.99900 * 7 5 3 11 11 C 1.46501 * 120.00424 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47108 * 94.06693 * 11 2 1 13 13 H 1.08993 * 109.58615 * 298.10795 * 12 11 2 14 14 C 1.53200 * 109.58472 * 58.38886 * 12 11 2 15 15 C 1.53351 * 109.14623 * 174.43306 * 14 12 11 16 16 C 1.53041 * 109.61123 * 298.71373 * 15 14 12 17 17 C 1.53196 * 109.31075 * 61.37618 * 16 15 14 18 18 N 1.46924 * 109.58611 * 177.82120 * 12 11 2 19 19 C 1.34774 * 120.63363 * 6.44119 * 18 12 11 20 20 O 1.21283 * 119.99496 * 4.72800 * 19 18 12 21 21 C 1.50698 * 120.00475 * 184.72516 * 19 18 12 22 22 H 1.09003 * 110.05099 * 332.89396 * 21 19 18 23 23 C 1.54385 * 110.06758 * 94.37324 * 21 19 18 24 24 C 1.54923 * 104.21890 * 142.78246 * 23 21 19 25 25 C 1.54987 * 102.82344 * 322.28376 * 24 23 21 26 26 C 1.53473 * 110.07208 * 211.40651 * 21 19 18 27 27 C 1.52576 * 121.05526 * 96.56801 * 26 21 19 28 28 C 1.52555 * 121.09034 * 24.85406 * 26 21 19 29 29 H 1.08996 * 109.46966 * 184.63251 * 1 2 3 30 30 H 1.09003 * 109.47282 * 304.63731 * 1 2 3 31 31 H 1.09000 * 109.47011 * 64.63572 * 1 2 3 32 32 H 0.97000 * 120.00001 * 180.02562 * 6 5 3 33 33 H 1.08995 * 109.46823 * 334.07047 * 11 2 1 34 34 H 1.09002 * 109.47191 * 214.07170 * 11 2 1 35 35 H 1.08996 * 109.50183 * 294.51436 * 14 12 11 36 36 H 1.09000 * 109.49347 * 54.61743 * 14 12 11 37 37 H 1.09008 * 109.41539 * 178.67526 * 15 14 12 38 38 H 1.09000 * 109.43257 * 58.76340 * 15 14 12 39 39 H 1.08997 * 109.49456 * 301.42565 * 16 15 14 40 40 H 1.09001 * 109.52258 * 181.34164 * 16 15 14 41 41 H 1.08994 * 109.58388 * 185.58095 * 17 16 15 42 42 H 1.08996 * 109.58598 * 65.14873 * 17 16 15 43 43 H 1.08991 * 110.48624 * 261.46852 * 23 21 19 44 44 H 1.09000 * 110.48155 * 24.10648 * 23 21 19 45 45 H 1.09008 * 110.74381 * 80.61708 * 24 23 21 46 46 H 1.08998 * 110.74278 * 203.94708 * 24 23 21 47 47 H 1.09000 * 110.51250 * 156.22183 * 25 24 23 48 48 H 1.09001 * 110.51259 * 278.92418 * 25 24 23 49 49 H 1.09002 * 117.50511 * 356.97267 * 27 26 21 50 50 H 1.08994 * 117.50979 * 142.05380 * 27 26 21 51 51 H 1.09000 * 117.50997 * 217.88333 * 28 26 21 52 52 H 1.08995 * 117.50870 * 2.92829 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2255 1.1884 0.0941 5 6 1.4609 2.3850 -0.1210 6 7 0.1447 2.3895 -0.1347 7 14 2.4018 3.9923 -0.2646 8 1 2.6651 4.2857 -1.6963 9 1 1.5968 5.0917 0.3260 10 1 3.6915 3.8775 0.4626 11 6 2.1975 -1.2687 0.0006 12 6 2.5412 -1.6598 -1.4381 13 1 1.6226 -1.8044 -2.0068 14 6 3.3771 -0.5514 -2.0859 15 6 3.8329 -1.0123 -3.4757 16 6 4.7047 -2.2630 -3.3418 17 6 3.8821 -3.3882 -2.7062 18 7 3.3211 -2.9050 -1.4371 19 6 3.5185 -3.5907 -0.2938 20 8 2.9800 -3.2289 0.7309 21 6 4.4082 -4.8070 -0.2886 22 1 4.4174 -5.2675 -1.2765 23 6 5.8422 -4.4126 0.1255 24 6 6.3314 -5.6047 0.9856 25 6 5.0580 -6.0064 1.7726 26 6 3.9154 -5.8156 0.7580 27 6 3.0164 -6.9835 0.3634 28 6 2.4578 -5.8353 1.2079 29 1 -0.3633 -1.0243 0.0830 30 1 -0.3634 0.5841 0.8455 31 1 -0.3633 0.4402 -0.9286 32 1 -0.3366 3.2273 -0.2196 33 1 1.5789 -2.0452 0.4503 34 1 3.1164 -1.1574 0.5763 35 1 2.7745 0.3521 -2.1781 36 1 4.2503 -0.3454 -1.4669 37 1 4.4086 -0.2175 -3.9503 38 1 2.9596 -1.2420 -4.0861 39 1 5.5654 -2.0406 -2.7111 40 1 5.0474 -2.5754 -4.3282 41 1 4.5242 -4.2485 -2.5177 42 1 3.0729 -3.6737 -3.3783 43 1 6.4740 -4.2927 -0.7545 44 1 5.8304 -3.4962 0.7155 45 1 6.6686 -6.4252 0.3521 46 1 7.1228 -5.2906 1.6662 47 1 5.1173 -7.0478 2.0891 48 1 4.9185 -5.3522 2.6332 49 1 2.6979 -7.0444 -0.6773 50 1 3.1847 -7.9388 0.8606 51 1 2.2585 -6.0354 2.2607 52 1 1.7719 -5.1406 0.7233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158124630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:18 Heat of formation + Delta-G solvation = 28.568059 kcal Electronic energy + Delta-G solvation = -29616.427784 eV Core-core repulsion = 26003.842573 eV Total energy + Delta-G solvation = -3612.585211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.72870 -38.69556 -36.68355 -35.45627 -34.25807 -32.51871 -31.99167 -30.08176 -29.11901 -26.38763 -25.86497 -25.60905 -24.23552 -22.51805 -22.40467 -21.28985 -20.70966 -20.38743 -19.18195 -17.97261 -16.93757 -16.52320 -15.72976 -15.56900 -15.08233 -14.90094 -14.43470 -14.18375 -14.15189 -13.83253 -13.45998 -13.28701 -13.06184 -12.94222 -12.68684 -12.54315 -12.36261 -12.18780 -11.50941 -11.44903 -11.36572 -11.20965 -11.14032 -10.96767 -10.90413 -10.72179 -10.70504 -10.62731 -10.50723 -10.32955 -10.20490 -10.14970 -10.01200 -9.75226 -9.66190 -9.59348 -8.63381 -8.35296 -8.09068 -6.72953 -5.52090 -2.93162 2.95783 3.24634 3.43640 3.49875 3.51260 3.83940 4.26048 4.56199 4.60020 4.71411 4.78888 4.87001 5.01176 5.05009 5.08250 5.13903 5.19399 5.31359 5.48089 5.52119 5.56576 5.60656 5.63215 5.65144 5.71065 5.72407 5.82665 5.83524 5.88787 5.97314 6.00728 6.02888 6.07318 6.10855 6.13176 6.20551 6.23578 6.28585 6.30893 6.58625 6.63328 6.83230 6.93873 7.04173 7.17233 7.40374 7.79940 7.80468 7.85549 8.06606 8.49905 8.64152 9.40651 10.06323 10.50115 11.46886 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.016072 B = 0.004070 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.774635 B = 6878.150299 C = 7434.706258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.613 5.613 3 C -0.232 4.232 4 H 0.071 0.929 5 C -0.008 4.008 6 N -0.919 5.919 7 Si 0.901 3.099 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.282 1.282 11 C 0.167 3.833 12 C 0.123 3.877 13 H 0.058 0.942 14 C -0.119 4.119 15 C -0.122 4.122 16 C -0.132 4.132 17 C 0.104 3.896 18 N -0.606 5.606 19 C 0.514 3.486 20 O -0.516 6.516 21 C -0.082 4.082 22 H 0.089 0.911 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.086 4.086 26 C -0.113 4.113 27 C -0.177 4.177 28 C -0.146 4.146 29 H -0.012 1.012 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.247 0.753 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.741 -18.817 -4.575 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.337 5.337 3 C -0.361 4.361 4 H 0.089 0.911 5 C -0.204 4.204 6 N -0.568 5.568 7 Si 0.732 3.268 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.208 1.208 11 C 0.040 3.960 12 C 0.019 3.981 13 H 0.076 0.924 14 C -0.157 4.157 15 C -0.160 4.160 16 C -0.170 4.170 17 C -0.019 4.019 18 N -0.340 5.340 19 C 0.302 3.698 20 O -0.392 6.392 21 C -0.103 4.103 22 H 0.107 0.893 23 C -0.145 4.145 24 C -0.157 4.157 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.214 4.214 28 C -0.183 4.183 29 H 0.006 0.994 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.108 0.892 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.310 -18.446 -3.998 21.507 hybrid contribution 0.509 1.026 -0.510 1.254 sum 10.820 -17.420 -4.508 20.996 Atomic orbital electron populations 1.21000 0.81995 0.92796 1.01505 1.44366 1.02401 1.01113 1.85836 1.19296 0.91112 0.83905 1.41803 0.91078 1.24844 0.95607 0.97601 1.02347 1.70233 1.04872 1.24447 1.57218 0.86283 0.78824 0.84102 0.77633 1.21730 1.21852 1.20814 1.21387 0.96858 0.87390 0.90399 1.22491 0.91973 0.81078 1.02591 0.92381 1.21999 1.00175 0.99723 0.93776 1.21642 0.99019 0.96585 0.98749 1.21901 0.98732 0.96151 1.00256 1.21758 0.97355 0.96830 0.85979 1.48474 1.53243 1.25284 1.07025 1.20419 0.81608 0.84355 0.83437 1.90766 1.48310 1.67554 1.32540 1.21521 0.95565 0.93789 0.99415 0.89286 1.22251 0.92970 0.99203 1.00034 1.22446 0.97251 0.97578 0.98385 1.21882 0.92483 1.00921 0.97037 1.21416 0.92811 0.98444 0.98650 1.23078 1.04241 0.93369 1.00757 1.22896 0.95369 0.99876 1.00128 0.99361 0.93457 0.94894 0.94176 0.91337 0.93552 0.88172 0.92627 0.92304 0.92395 0.91750 0.91556 0.90216 0.91862 0.91158 0.90757 0.91406 0.91283 0.91760 0.90828 0.89204 0.88962 0.88959 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.53 9.00 59.84 0.54 5.06 16 2 N -0.61 -16.06 2.79 -181.13 -0.50 -16.57 16 3 C -0.23 -6.42 7.49 -15.06 -0.11 -6.53 16 4 H 0.07 1.95 7.71 -52.49 -0.40 1.54 16 5 C -0.01 -0.24 5.45 -17.43 -0.10 -0.34 16 6 N -0.92 -27.21 9.44 55.49 0.52 -26.68 16 7 Si 0.90 22.33 29.56 -169.99 -5.02 17.31 16 8 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 9 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.17 3.79 3.71 -4.04 -0.01 3.77 16 12 C 0.12 2.33 3.21 -67.60 -0.22 2.12 16 13 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.12 -2.19 4.38 -26.45 -0.12 -2.31 16 15 C -0.12 -1.74 5.89 -26.53 -0.16 -1.90 16 16 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 17 C 0.10 1.20 6.29 -3.71 -0.02 1.17 16 18 N -0.61 -9.28 2.97 -165.22 -0.49 -9.78 16 19 C 0.51 8.06 5.82 -10.99 -0.06 7.99 16 20 O -0.52 -9.96 10.12 5.55 0.06 -9.90 16 21 C -0.08 -0.96 2.52 -90.80 -0.23 -1.19 16 22 H 0.09 0.89 5.87 -51.93 -0.30 0.59 16 23 C -0.11 -1.13 6.36 -24.99 -0.16 -1.29 16 24 C -0.12 -1.07 6.91 -24.67 -0.17 -1.24 16 25 C -0.09 -0.88 6.59 -25.16 -0.17 -1.04 16 26 C -0.11 -1.30 2.07 -154.19 -0.32 -1.62 16 27 C -0.18 -1.80 10.24 -26.90 -0.28 -2.08 16 28 C -0.15 -1.86 8.88 -26.91 -0.24 -2.10 16 29 H -0.01 -0.29 7.72 -51.93 -0.40 -0.70 16 30 H 0.05 1.36 6.95 -51.93 -0.36 1.00 16 31 H 0.03 0.92 7.14 -51.93 -0.37 0.55 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.07 1.62 5.96 -51.93 -0.31 1.31 16 34 H 0.05 1.13 7.11 -51.93 -0.37 0.76 16 35 H 0.10 2.22 6.50 -51.93 -0.34 1.88 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.73 5.33 -51.93 -0.28 0.45 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 45 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.10 1.53 6.69 -51.93 -0.35 1.18 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -30.76 382.29 -11.02 -41.78 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -9.36 Total: 1.26 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.98 Total: -3.18 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.47 Total: -53.02 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.06 Total: -9.90 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.76 -11.02 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158124630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.348 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds