Wall clock time and date at job start Tue Mar 31 2020 12:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 120.00065 * 2 1 4 4 H 1.07994 * 120.00173 * 152.59819 * 3 2 1 5 5 C 1.38811 * 119.99408 * 332.31255 * 3 2 1 6 6 N 1.31628 * 119.99570 * 159.05642 * 5 3 2 7 7 Si 1.86796 * 120.00445 * 339.05276 * 5 3 2 8 8 H 1.48507 * 109.47005 * 85.63196 * 7 5 3 9 9 H 1.48496 * 109.47613 * 205.63050 * 7 5 3 10 10 H 1.48506 * 109.47320 * 325.63590 * 7 5 3 11 11 C 1.46504 * 120.00098 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47321 * 266.40203 * 11 2 1 13 13 H 1.08995 * 109.58625 * 298.53359 * 12 11 2 14 14 C 1.53195 * 109.58567 * 58.96248 * 12 11 2 15 15 C 1.53041 * 109.31521 * 174.42322 * 14 12 11 16 16 C 1.53041 * 109.53219 * 298.63066 * 15 14 12 17 17 C 1.53195 * 109.31459 * 61.36749 * 16 15 14 18 18 N 1.46922 * 108.77323 * 305.36126 * 17 16 15 19 19 C 1.34776 * 120.63398 * 233.58754 * 18 17 16 20 20 O 1.21275 * 120.00409 * 184.66548 * 19 18 17 21 21 C 1.50699 * 119.99504 * 4.65975 * 19 18 17 22 22 C 1.53003 * 109.47163 * 177.05772 * 21 19 18 23 23 H 1.09002 * 109.64071 * 53.85388 * 22 21 19 24 24 C 1.53023 * 109.63838 * 293.22554 * 22 21 19 25 25 C 1.50074 * 110.14581 * 190.87875 * 24 22 21 26 26 C 1.29445 * 124.07426 * 17.12500 * 25 24 22 27 27 C 1.50073 * 124.07645 * 359.53778 * 26 25 24 28 28 C 1.53022 * 110.14702 * 17.12745 * 27 26 25 29 29 H 1.09004 * 109.47211 * 86.83470 * 1 2 3 30 30 H 1.09002 * 109.47248 * 206.83772 * 1 2 3 31 31 H 1.09001 * 109.47511 * 326.83406 * 1 2 3 32 32 H 0.97003 * 119.99339 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.46510 * 26.40445 * 11 2 1 34 34 H 1.09000 * 109.46674 * 146.40213 * 11 2 1 35 35 H 1.09011 * 109.49496 * 294.37332 * 14 12 11 36 36 H 1.09001 * 109.50270 * 54.46193 * 14 12 11 37 37 H 1.09001 * 109.45815 * 178.61473 * 15 14 12 38 38 H 1.08992 * 109.46101 * 58.65063 * 15 14 12 39 39 H 1.09005 * 109.50097 * 301.41214 * 16 15 14 40 40 H 1.09006 * 109.51910 * 181.32957 * 16 15 14 41 41 H 1.08992 * 109.58580 * 185.57622 * 17 16 15 42 42 H 1.09001 * 109.58306 * 65.14563 * 17 16 15 43 43 H 1.09000 * 109.47303 * 297.05621 * 21 19 18 44 44 H 1.08996 * 109.47377 * 57.05871 * 21 19 18 45 45 H 1.08999 * 109.35895 * 311.07987 * 24 22 21 46 46 H 1.08997 * 109.36240 * 70.66996 * 24 22 21 47 47 H 1.07998 * 117.96550 * 197.15180 * 25 24 22 48 48 H 1.07998 * 117.96013 * 179.55336 * 26 25 24 49 49 H 1.09005 * 109.35435 * 256.92180 * 27 26 25 50 50 H 1.08994 * 109.35865 * 137.33608 * 27 26 25 51 51 H 1.08997 * 109.64475 * 190.88250 * 28 27 26 52 52 H 1.08995 * 109.81662 * 70.34899 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1387 1.2384 0.4304 5 6 1.5747 2.3192 -0.5586 6 7 2.0074 3.5140 -0.2153 7 14 0.1872 2.1487 -1.7975 8 1 -1.1074 2.0364 -1.0785 9 1 0.1614 3.3430 -2.6795 10 1 0.4041 0.9309 -2.6194 11 6 2.1975 -1.2687 0.0006 12 6 2.5309 -1.6645 1.4404 13 1 3.1679 -0.9032 1.8904 14 6 1.2366 -1.7990 2.2488 15 6 1.5655 -2.3288 3.6464 16 6 2.2087 -3.7127 3.5308 17 6 3.5140 -3.6000 2.7369 18 7 3.2288 -2.9575 1.4467 19 6 3.6007 -3.5427 0.2910 20 8 3.4359 -2.9643 -0.7621 21 6 4.2214 -4.9158 0.3074 22 6 4.4807 -5.3755 -1.1287 23 1 5.0694 -4.6232 -1.6536 24 6 3.1476 -5.5869 -1.8497 25 6 3.3731 -6.2848 -3.1590 26 6 4.4561 -6.9257 -3.4621 27 6 5.6416 -7.0518 -2.5506 28 6 5.2411 -6.7077 -1.1144 29 1 -0.3634 0.0567 -1.0261 30 1 -0.3634 -0.9170 0.4640 31 1 -0.3634 0.8602 0.5622 32 1 1.6058 4.3058 -0.6060 33 1 1.5820 -2.0438 -0.4561 34 1 3.1204 -1.1556 -0.5682 35 1 0.7573 -0.8236 2.3330 36 1 0.5637 -2.4932 1.7455 37 1 0.6490 -2.4021 4.2319 38 1 2.2578 -1.6467 4.1397 39 1 1.5266 -4.3890 3.0154 40 1 2.4213 -4.0999 4.5273 41 1 3.9251 -4.5950 2.5666 42 1 4.2302 -2.9970 3.2950 43 1 5.1639 -4.8820 0.8538 44 1 3.5432 -5.6154 0.7959 45 1 2.4914 -6.1932 -1.2254 46 1 2.6781 -4.6202 -2.0317 47 1 2.5827 -6.2500 -3.8941 48 1 4.5101 -7.3988 -4.4315 49 1 6.4252 -6.3696 -2.8805 50 1 6.0173 -8.0743 -2.5858 51 1 6.1347 -6.6128 -0.4975 52 1 4.5995 -7.4914 -0.7118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158322180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:49 Heat of formation + Delta-G solvation = 2.529926 kcal Electronic energy + Delta-G solvation = -28911.842883 eV Core-core repulsion = 25298.128574 eV Total energy + Delta-G solvation = -3613.714309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.48251 -38.68368 -37.05707 -35.71247 -33.14782 -32.54582 -31.85895 -30.84061 -30.55521 -27.78791 -26.74726 -25.61095 -24.36844 -23.35466 -22.65889 -21.55434 -20.45329 -20.29420 -18.68461 -17.97761 -16.94875 -16.28948 -16.11218 -15.72749 -15.19699 -15.06912 -14.56677 -14.36802 -14.25133 -13.91372 -13.58867 -13.52676 -13.25477 -13.12489 -13.01334 -12.74348 -12.51030 -12.39615 -12.26558 -12.09244 -12.00398 -11.82591 -11.61514 -11.31488 -11.00881 -10.82918 -10.74730 -10.52498 -10.50945 -10.38916 -10.24140 -10.20709 -10.08864 -9.92260 -9.49048 -9.02544 -8.69968 -8.46486 -8.21120 -6.80638 -5.85280 -3.20283 2.26069 2.89548 3.19780 3.44438 3.58412 3.65475 4.49600 4.54345 4.64745 4.66591 4.77400 4.88887 4.90938 5.06573 5.07653 5.16225 5.27001 5.27545 5.33384 5.35860 5.46360 5.46693 5.52573 5.54059 5.57820 5.62498 5.71304 5.75294 5.79062 5.85969 5.87169 5.91902 6.06832 6.08511 6.12122 6.23894 6.29931 6.34982 6.38223 6.40099 6.47857 6.61423 6.62857 6.78369 6.82990 6.90563 6.93665 7.34656 7.71560 8.10404 8.41535 8.54784 9.10730 9.86289 10.21462 11.31481 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.004075 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.825841 B = 6869.327491 C = 8410.952908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.612 5.612 3 C -0.257 4.257 4 H 0.083 0.917 5 C 0.025 3.975 6 N -0.911 5.911 7 Si 0.891 3.109 8 H -0.289 1.289 9 H -0.307 1.307 10 H -0.278 1.278 11 C 0.162 3.838 12 C 0.124 3.876 13 H 0.072 0.928 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.133 4.133 17 C 0.107 3.893 18 N -0.608 5.608 19 C 0.508 3.492 20 O -0.520 6.520 21 C -0.136 4.136 22 C -0.071 4.071 23 H 0.083 0.917 24 C -0.092 4.092 25 C -0.142 4.142 26 C -0.170 4.170 27 C -0.088 4.088 28 C -0.115 4.115 29 H 0.004 0.996 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.261 0.739 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.064 0.936 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 -23.825 5.059 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.337 5.337 3 C -0.386 4.386 4 H 0.101 0.899 5 C -0.173 4.173 6 N -0.555 5.555 7 Si 0.722 3.278 8 H -0.216 1.216 9 H -0.236 1.236 10 H -0.204 1.204 11 C 0.036 3.964 12 C 0.020 3.980 13 H 0.090 0.910 14 C -0.161 4.161 15 C -0.158 4.158 16 C -0.171 4.171 17 C -0.016 4.016 18 N -0.343 5.343 19 C 0.296 3.704 20 O -0.396 6.396 21 C -0.176 4.176 22 C -0.090 4.090 23 H 0.102 0.898 24 C -0.128 4.128 25 C -0.160 4.160 26 C -0.188 4.188 27 C -0.125 4.125 28 C -0.153 4.153 29 H 0.022 0.978 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.121 -23.331 4.450 24.106 hybrid contribution -0.914 -0.002 -0.573 1.078 sum 3.207 -23.333 3.877 23.869 Atomic orbital electron populations 1.21401 0.85343 0.99563 0.97684 1.44432 1.00383 1.02831 1.86034 1.18862 1.02170 0.84868 1.32662 0.89933 1.25244 0.98235 0.95126 0.98742 1.69861 1.44504 0.97119 1.44015 0.86894 0.82233 0.75698 0.82932 1.21635 1.23592 1.20439 1.21446 0.97739 0.86481 0.90713 1.22271 0.92117 0.82185 1.01436 0.91028 1.21939 0.97732 1.02084 0.94311 1.21543 1.00419 0.95939 0.97930 1.21905 0.97117 0.98276 0.99814 1.21693 0.97166 0.97938 0.84819 1.48350 1.58166 1.22361 1.05388 1.20618 0.78590 0.87524 0.83693 1.90772 1.54323 1.63653 1.30856 1.21821 1.01887 0.94859 0.99059 1.20966 0.97166 0.96917 0.93936 0.89829 1.20611 0.97135 1.01294 0.93804 1.22117 0.97950 0.97742 0.98196 1.21976 0.95790 1.01313 0.99724 1.20398 0.96600 1.01333 0.94144 1.21669 0.99937 0.97176 0.96482 0.97829 0.94676 0.93144 0.92951 0.93813 0.89773 0.89699 0.92629 0.92215 0.91872 0.91803 0.91271 0.90189 0.91516 0.89240 0.89428 0.91601 0.89025 0.88262 0.88411 0.91005 0.91431 0.91740 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.41 7.31 59.84 0.44 2.85 16 2 N -0.61 -15.22 2.32 -181.12 -0.42 -15.64 16 3 C -0.26 -7.44 10.02 -15.06 -0.15 -7.60 16 4 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 5 C 0.03 0.75 5.25 -17.43 -0.09 0.66 16 6 N -0.91 -28.75 13.97 55.49 0.78 -27.97 16 7 Si 0.89 23.88 24.03 -169.99 -4.09 19.79 16 8 H -0.29 -7.40 6.66 56.52 0.38 -7.02 16 9 H -0.31 -8.33 7.11 56.52 0.40 -7.92 16 10 H -0.28 -7.56 6.87 56.52 0.39 -7.18 16 11 C 0.16 3.51 3.60 -4.04 -0.01 3.50 16 12 C 0.12 2.19 3.20 -67.60 -0.22 1.98 16 13 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.12 -1.91 4.04 -26.61 -0.11 -2.02 16 15 C -0.12 -1.45 5.88 -26.69 -0.16 -1.61 16 16 C -0.13 -1.27 6.08 -26.61 -0.16 -1.44 16 17 C 0.11 1.08 6.36 -3.71 -0.02 1.05 16 18 N -0.61 -8.56 2.97 -165.23 -0.49 -9.05 16 19 C 0.51 7.36 7.28 -10.99 -0.08 7.28 16 20 O -0.52 -9.63 9.76 5.56 0.05 -9.57 16 21 C -0.14 -1.37 3.51 -27.88 -0.10 -1.46 16 22 C -0.07 -0.77 1.87 -90.40 -0.17 -0.94 16 23 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 24 C -0.09 -1.08 5.07 -28.17 -0.14 -1.23 16 25 C -0.14 -1.59 9.80 -35.90 -0.35 -1.94 16 26 C -0.17 -1.71 9.80 -35.90 -0.35 -2.06 16 27 C -0.09 -0.76 6.12 -28.17 -0.17 -0.93 16 28 C -0.12 -0.97 5.31 -26.52 -0.14 -1.11 16 29 H 0.00 0.10 4.93 -51.93 -0.26 -0.16 16 30 H 0.03 0.68 6.56 -51.93 -0.34 0.34 16 31 H 0.05 1.20 6.88 -51.93 -0.36 0.85 16 32 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 33 H 0.04 0.95 7.12 -51.93 -0.37 0.58 16 34 H 0.08 2.05 6.18 -51.93 -0.32 1.72 16 35 H 0.08 1.52 6.82 -51.92 -0.35 1.17 16 36 H 0.05 0.86 7.86 -51.93 -0.41 0.46 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.59 5.92 -51.93 -0.31 0.29 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.74 7.89 -51.93 -0.41 0.33 16 44 H 0.09 0.73 7.69 -51.93 -0.40 0.33 16 45 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 46 H 0.09 1.35 6.47 -51.93 -0.34 1.02 16 47 H 0.10 1.06 8.06 -52.49 -0.42 0.63 16 48 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 52 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -32.96 378.31 -9.81 -42.77 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -9.36 Total: -1.02 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.99 Total: -5.01 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.14 Total: -52.66 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.05 Total: -9.57 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.09 Total: 19.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.96 -9.81 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158322180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.302 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds