Wall clock time and date at job start Tue Mar 31 2020 12:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47135 * 2 1 4 4 C 1.53007 * 109.47013 * 119.99636 * 2 1 3 5 5 O 1.42895 * 109.47272 * 64.99946 * 4 2 1 6 6 C 1.42897 * 114.00150 * 179.97438 * 5 4 2 7 7 C 1.53007 * 109.47159 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47013 * 174.77752 * 7 6 5 9 9 H 1.09000 * 109.47080 * 303.03597 * 8 7 6 10 10 C 1.52999 * 109.47110 * 63.03739 * 8 7 6 11 11 N 1.46906 * 109.46836 * 183.03971 * 8 7 6 12 12 C 1.46897 * 111.00277 * 65.44341 * 11 8 7 13 13 C 1.50698 * 109.47035 * 203.23133 * 12 11 8 14 14 H 1.07993 * 120.00157 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99935 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99678 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00004 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47020 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46897 * 119.99614 * 17 15 13 20 20 H 1.48498 * 109.46779 * 239.99560 * 17 15 13 21 21 C 1.46902 * 110.99583 * 189.39719 * 11 8 7 22 22 C 1.50704 * 109.46743 * 169.99895 * 21 11 8 23 23 C 1.38666 * 120.41649 * 270.25801 * 22 21 11 24 24 C 1.38637 * 118.41941 * 180.22303 * 23 22 21 25 25 C 1.38224 * 119.15687 * 359.48257 * 24 23 22 26 26 N 1.31847 * 120.76445 * 0.29439 * 25 24 23 27 27 C 1.31882 * 121.73028 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46941 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46967 * 300.00348 * 1 2 3 30 30 H 1.08991 * 109.47346 * 60.00119 * 1 2 3 31 31 H 1.08995 * 109.47441 * 239.99658 * 2 1 3 32 32 H 1.08994 * 109.47304 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47000 * 299.99738 * 3 2 1 34 34 H 1.09003 * 109.47577 * 59.99452 * 3 2 1 35 35 H 1.09004 * 109.47250 * 304.99796 * 4 2 1 36 36 H 1.09001 * 109.46603 * 185.00262 * 4 2 1 37 37 H 1.08992 * 109.47258 * 60.00095 * 6 5 4 38 38 H 1.08996 * 109.46963 * 299.99839 * 6 5 4 39 39 H 1.09001 * 109.46957 * 54.77614 * 7 6 5 40 40 H 1.09001 * 109.47042 * 294.77971 * 7 6 5 41 41 H 1.09001 * 109.46912 * 60.00385 * 10 8 7 42 42 H 1.09007 * 109.46988 * 180.02562 * 10 8 7 43 43 H 1.08996 * 109.46913 * 299.99388 * 10 8 7 44 44 H 1.09005 * 109.47094 * 323.23122 * 12 11 8 45 45 H 1.09003 * 109.46995 * 83.22566 * 12 11 8 46 46 H 0.97007 * 119.99525 * 180.02562 * 16 15 13 47 47 H 1.09002 * 109.47509 * 49.99764 * 21 11 8 48 48 H 1.09007 * 109.47270 * 289.99512 * 21 11 8 49 49 H 1.08005 * 120.79433 * 359.97358 * 23 22 21 50 50 H 1.07997 * 120.41689 * 179.75503 * 24 23 22 51 51 H 1.08004 * 119.61367 * 180.27767 * 25 24 23 52 52 H 1.08003 * 119.62052 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 8 1.6620 -2.0981 1.1922 6 6 2.0923 -2.8661 2.3178 7 6 1.6353 -4.3167 2.1502 8 6 2.2057 -5.1658 3.2879 9 1 3.2923 -5.0797 3.2960 10 6 1.6450 -4.6723 4.6231 11 7 1.8274 -6.5711 3.0872 12 6 2.4559 -7.1179 1.8773 13 6 1.6538 -8.2937 1.3822 14 1 0.7662 -8.6039 1.9133 15 6 2.0537 -8.9740 0.2516 16 7 3.1350 -8.5964 -0.3950 17 14 1.0599 -10.4318 -0.3618 18 1 -0.1022 -10.6517 0.5362 19 1 0.5768 -10.1573 -1.7390 20 1 1.9153 -11.6457 -0.3701 21 6 2.1631 -7.3801 4.2665 22 6 1.5463 -8.7483 4.1291 23 6 0.2689 -8.9939 4.6094 24 6 -0.2563 -10.2688 4.4653 25 6 0.5013 -11.2428 3.8424 26 7 1.7111 -10.9720 3.3937 27 6 2.2445 -9.7723 3.5181 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6054 -0.2616 2.1371 36 1 3.1263 -0.6442 1.2952 37 1 1.6592 -2.4512 3.2278 38 1 3.1797 -2.8337 2.3854 39 1 1.9921 -4.7020 1.1950 40 1 0.5464 -4.3598 2.1753 41 1 0.5584 -4.7585 4.6150 42 1 2.0518 -5.2770 5.4338 43 1 1.9258 -3.6297 4.7720 44 1 2.4880 -6.3490 1.1053 45 1 3.4704 -7.4420 2.1097 46 1 3.4161 -9.0748 -1.1907 47 1 1.7754 -6.8950 5.1623 48 1 3.2461 -7.4760 4.3450 49 1 -0.3018 -8.2118 5.0880 50 1 -1.2465 -10.4968 4.8312 51 1 0.0976 -12.2374 3.7222 52 1 3.2387 -9.5881 3.1383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172474778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:00 Heat of formation + Delta-G solvation = -19.147807 kcal Electronic energy + Delta-G solvation = -27761.698164 eV Core-core repulsion = 24147.043837 eV Total energy + Delta-G solvation = -3614.654326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.56931 -38.47723 -37.45053 -35.20448 -33.33531 -32.56366 -31.34053 -30.25779 -28.91145 -27.28506 -26.81006 -25.89526 -25.14153 -22.90743 -22.72623 -22.00328 -20.78955 -20.25273 -19.18178 -16.77137 -16.37576 -16.30407 -16.14068 -15.72865 -15.32217 -14.92308 -14.65683 -14.52469 -14.31410 -13.89760 -13.54572 -13.10377 -12.94543 -12.84332 -12.64661 -12.52310 -12.31770 -12.29754 -12.22135 -11.99778 -11.76085 -11.51288 -11.30111 -11.21450 -10.97666 -10.88821 -10.80302 -10.73407 -10.64080 -10.45994 -10.40679 -10.06490 -9.72720 -9.42221 -9.30315 -8.93191 -8.60349 -8.42997 -7.93608 -7.33820 -6.00874 -3.95804 1.93838 2.10979 3.39030 3.47137 3.52190 3.68701 4.45594 4.56123 4.72528 4.77949 4.93647 5.05906 5.21119 5.22728 5.32852 5.33849 5.35943 5.38848 5.42808 5.45602 5.51326 5.54270 5.60159 5.61977 5.66375 5.71257 5.75036 5.76064 5.81181 5.85255 5.93025 5.99024 6.00996 6.14729 6.20210 6.23326 6.27056 6.31495 6.41037 6.59130 6.63112 6.74219 6.81989 7.07426 7.15462 7.28665 7.39082 7.53557 7.84974 8.10153 8.14040 8.51406 8.84417 9.07879 9.64590 11.08629 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.003156 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.096416 B = 8870.758080 C =10044.581745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.145 4.145 4 C 0.067 3.933 5 O -0.384 6.384 6 C 0.067 3.933 7 C -0.109 4.109 8 C 0.087 3.913 9 H 0.031 0.969 10 C -0.151 4.151 11 N -0.526 5.526 12 C 0.186 3.814 13 C -0.489 4.489 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.894 5.894 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.281 1.281 21 C 0.103 3.897 22 C -0.106 4.106 23 C -0.067 4.067 24 C -0.198 4.198 25 C 0.087 3.913 26 N -0.498 5.498 27 C 0.172 3.828 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.036 0.964 45 H -0.007 1.007 46 H 0.260 0.740 47 H 0.073 0.927 48 H 0.032 0.968 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.138 0.862 52 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 13.146 8.820 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.010 4.010 5 O -0.303 6.303 6 C -0.010 4.010 7 C -0.146 4.146 8 C -0.022 4.022 9 H 0.049 0.951 10 C -0.209 4.209 11 N -0.251 5.251 12 C 0.061 3.939 13 C -0.527 4.527 14 H 0.084 0.916 15 C -0.138 4.138 16 N -0.533 5.533 17 Si 0.716 3.284 18 H -0.196 1.196 19 H -0.216 1.216 20 H -0.207 1.207 21 C -0.025 4.025 22 C -0.108 4.108 23 C -0.093 4.093 24 C -0.218 4.218 25 C -0.069 4.069 26 N -0.207 5.207 27 C 0.015 3.985 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.011 0.989 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.050 0.950 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.156 0.844 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.647 12.343 8.045 14.969 hybrid contribution -0.023 0.026 0.039 0.052 sum -2.670 12.369 8.083 15.015 Atomic orbital electron populations 1.21779 0.94585 1.02695 1.01069 1.21103 0.96824 0.95416 0.98226 1.21783 1.01011 0.95439 1.02019 1.22517 0.98148 0.82685 0.97672 1.87906 1.78653 1.19687 1.44050 1.22565 0.97875 0.92559 0.88010 1.21526 1.02165 0.90819 1.00130 1.21382 0.96544 0.90234 0.94055 0.95107 1.22057 1.02039 0.99910 0.96869 1.62219 1.60213 0.99084 1.03612 1.19918 0.92536 0.95456 0.85981 1.21244 1.10287 1.11846 1.09368 0.91644 1.24865 0.95041 0.97494 0.96416 1.69960 1.23752 1.40772 1.18852 0.86558 0.80652 0.83037 0.78160 1.19646 1.21587 1.20718 1.20918 0.96845 0.90536 0.94229 1.20479 0.95287 0.96106 0.98964 1.21164 0.94340 0.95980 0.97827 1.21808 1.00884 0.94818 1.04309 1.22468 0.90856 0.98844 0.94715 1.67625 1.12693 1.22790 1.17596 1.22386 0.99612 0.87021 0.89497 0.91550 0.93109 0.92964 0.90263 0.92594 0.92132 0.92656 0.93762 0.93722 0.93663 0.93896 0.89879 0.90709 0.91826 0.92577 0.92973 0.94657 0.98928 0.93042 0.90902 0.95027 0.86160 0.86329 0.84449 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.09 37.16 0.34 -1.13 16 2 C -0.10 -1.00 3.16 -90.62 -0.29 -1.28 16 3 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 4 C 0.07 0.76 5.32 37.16 0.20 0.96 16 5 O -0.38 -5.70 9.88 -35.23 -0.35 -6.05 16 6 C 0.07 0.93 5.51 37.16 0.20 1.13 16 7 C -0.11 -1.82 5.10 -26.73 -0.14 -1.96 16 8 C 0.09 1.42 2.17 -67.71 -0.15 1.28 16 9 H 0.03 0.52 8.13 -51.93 -0.42 0.10 16 10 C -0.15 -1.96 8.38 37.16 0.31 -1.65 16 11 N -0.53 -10.38 4.35 -229.51 -1.00 -11.38 16 12 C 0.19 4.51 4.38 -4.98 -0.02 4.49 16 13 C -0.49 -13.03 5.89 -34.44 -0.20 -13.24 16 14 H 0.07 1.81 6.13 -52.49 -0.32 1.49 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 17 Si 0.89 22.79 29.54 -169.99 -5.02 17.77 16 18 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 21 C 0.10 1.82 4.74 -4.97 -0.02 1.79 16 22 C -0.11 -2.02 3.55 -104.48 -0.37 -2.39 16 23 C -0.07 -1.16 9.76 -39.28 -0.38 -1.54 16 24 C -0.20 -3.31 10.11 -39.44 -0.40 -3.71 16 25 C 0.09 1.61 11.18 -17.55 -0.20 1.42 16 26 N -0.50 -10.62 10.36 -13.25 -0.14 -10.76 16 27 C 0.17 3.65 7.66 -17.55 -0.13 3.51 16 28 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.55 6.78 -51.93 -0.35 0.20 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.66 6.11 -51.93 -0.32 1.34 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.68 6.10 -51.93 -0.32 0.36 16 43 H 0.05 0.58 6.62 -51.93 -0.34 0.23 16 44 H 0.04 0.93 5.76 -51.93 -0.30 0.63 16 45 H -0.01 -0.18 7.77 -51.93 -0.40 -0.59 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.07 1.09 5.55 -51.93 -0.29 0.80 16 48 H 0.03 0.56 7.88 -51.93 -0.41 0.15 16 49 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 50 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 51 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 52 H 0.15 3.26 7.94 -52.48 -0.42 2.85 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -30.28 404.04 -10.04 -40.32 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -9.35 Total: 0.84 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -1.01 Total: -11.43 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.40 Total: -47.53 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.35 Total: -6.05 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.28 -10.04 -40.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172474778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.169 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds