Wall clock time and date at job start Tue Mar 31 2020 12:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46912 * 124.35551 * 2 1 4 4 C 1.53850 * 105.35067 * 163.55091 * 3 2 1 5 5 C 1.53958 * 102.45427 * 24.71798 * 4 3 2 6 6 C 1.34505 * 124.34910 * 179.97438 * 2 1 3 7 7 O 1.21285 * 124.94518 * 0.40216 * 6 2 1 8 8 C 1.52230 * 110.57553 * 142.56083 * 4 3 2 9 9 C 1.53245 * 109.42883 * 180.70592 * 8 4 3 10 10 C 1.53130 * 109.06356 * 303.59339 * 9 8 4 11 11 C 1.53042 * 109.34780 * 58.32931 * 10 9 8 12 12 N 1.45969 * 110.74042 * 266.62627 * 4 3 2 13 13 C 1.46902 * 110.99875 * 52.66844 * 12 4 3 14 14 C 1.53004 * 109.46929 * 87.09872 * 13 12 4 15 15 C 1.52992 * 109.46976 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47519 * 299.99949 * 15 14 13 17 17 C 1.50700 * 109.47227 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00276 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99862 * 180.27717 * 17 16 15 20 20 N 1.31516 * 119.99955 * 359.72708 * 19 17 16 21 21 Si 1.86797 * 119.99747 * 179.72111 * 19 17 16 22 22 H 1.48501 * 109.46921 * 60.00716 * 21 19 17 23 23 H 1.48503 * 109.46904 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47565 * 299.99846 * 21 19 17 25 25 C 1.53004 * 109.46955 * 60.00038 * 16 15 14 26 26 C 1.52992 * 109.46976 * 300.00295 * 25 16 15 27 27 H 1.08995 * 109.47304 * 89.99997 * 1 2 3 28 28 H 1.08996 * 109.47333 * 210.00121 * 1 2 3 29 29 H 1.09002 * 109.46501 * 330.00203 * 1 2 3 30 30 H 1.08996 * 110.26888 * 44.57814 * 3 2 1 31 31 H 1.09001 * 110.26615 * 282.51459 * 3 2 1 32 32 H 1.08995 * 110.51480 * 94.51955 * 5 4 3 33 33 H 1.09004 * 110.50877 * 217.22894 * 5 4 3 34 34 H 1.09008 * 109.47720 * 300.68466 * 8 4 3 35 35 H 1.08994 * 109.48321 * 60.70484 * 8 4 3 36 36 H 1.08996 * 109.53914 * 63.46268 * 9 8 4 37 37 H 1.08992 * 109.53784 * 183.71866 * 9 8 4 38 38 H 1.09004 * 109.48765 * 178.29128 * 10 9 8 39 39 H 1.09004 * 109.49147 * 298.33645 * 10 9 8 40 40 H 1.09000 * 109.47535 * 180.15760 * 11 10 9 41 41 H 1.09003 * 109.47438 * 60.15121 * 11 10 9 42 42 H 1.08999 * 109.47483 * 327.09615 * 13 12 4 43 43 H 1.09004 * 109.46936 * 59.99921 * 14 13 12 44 44 H 1.08999 * 109.47251 * 299.99984 * 14 13 12 45 45 H 1.09002 * 109.47079 * 180.02562 * 15 14 13 46 46 H 1.09004 * 109.47093 * 60.00334 * 15 14 13 47 47 H 1.08998 * 109.47566 * 300.00047 * 16 15 14 48 48 H 0.97000 * 119.99622 * 180.02562 * 20 19 17 49 49 H 1.09004 * 109.46936 * 60.00056 * 25 16 15 50 50 H 1.08999 * 109.47251 * 179.97438 * 25 16 15 51 51 H 1.09004 * 109.47093 * 299.99665 * 26 25 16 52 52 H 1.09005 * 109.47007 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2941 1.2128 0.0000 4 6 3.6986 0.7461 0.4201 5 6 3.6917 -0.7379 0.0102 6 6 2.2239 -1.1105 0.0005 7 8 1.7951 -2.2450 -0.0060 8 6 4.7681 1.5083 -0.3496 9 6 6.1540 1.0113 0.0757 10 6 6.2971 1.1660 1.5924 11 6 5.1894 0.3730 2.2898 12 7 3.8788 0.8825 1.8622 13 6 2.7916 0.2186 2.5937 14 6 3.1446 -1.2551 2.8050 15 6 2.0126 -1.9465 3.5674 16 6 1.8233 -1.2677 4.9254 17 6 0.7087 -1.9491 5.6766 18 1 0.1871 -2.7827 5.2299 19 6 0.3505 -1.5044 6.9317 20 7 0.9853 -0.4889 7.4754 21 14 -1.0363 -2.3441 7.8595 22 1 -0.6966 -3.7744 8.0692 23 1 -1.2240 -1.6814 9.1752 24 1 -2.2910 -2.2435 7.0718 25 6 1.4703 0.2060 4.7142 26 6 2.6023 0.8973 3.9518 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3632 0.8901 0.5138 30 1 1.9059 1.9356 0.7176 31 1 2.3242 1.6496 -0.9982 32 1 4.1238 -0.8619 -0.9827 33 1 4.2332 -1.3385 0.7412 34 1 4.6347 1.3420 -1.4186 35 1 4.6818 2.5732 -0.1339 36 1 6.2637 -0.0387 -0.1955 37 1 6.9220 1.6006 -0.4249 38 1 7.2693 0.7862 1.9066 39 1 6.2144 2.2194 1.8600 40 1 5.2876 0.4840 3.3696 41 1 5.2740 -0.6807 2.0236 42 1 1.8686 0.2922 2.0186 43 1 4.0676 -1.3288 3.3802 44 1 3.2799 -1.7387 1.8375 45 1 2.2643 -2.9962 3.7183 46 1 1.0894 -1.8728 2.9925 47 1 2.7464 -1.3413 5.5003 48 1 0.7335 -0.1764 8.3585 49 1 0.5471 0.2796 4.1393 50 1 1.3350 0.6895 5.6816 51 1 3.5255 0.8237 4.5266 52 1 2.3510 1.9473 3.8016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:00 Heat of formation + Delta-G solvation = -41.972555 kcal Electronic energy + Delta-G solvation = -30525.262001 eV Core-core repulsion = 26909.617919 eV Total energy + Delta-G solvation = -3615.644082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.90717 -39.77519 -38.60780 -36.91344 -35.27747 -33.56717 -33.28262 -31.66696 -30.02039 -29.90158 -28.20267 -26.86134 -25.95480 -24.78813 -23.39033 -22.62907 -21.93578 -20.62948 -20.19945 -19.48646 -18.55826 -18.01266 -17.45060 -17.03503 -16.56235 -16.24763 -15.77016 -15.50992 -15.23219 -14.92502 -14.84777 -14.74568 -14.48265 -14.47456 -14.06956 -13.80221 -13.73665 -13.40049 -13.27736 -13.21281 -13.03295 -12.91051 -12.85149 -12.62982 -12.55413 -12.33469 -12.17149 -12.11812 -11.80921 -11.75425 -11.41743 -11.36057 -11.17269 -11.04977 -10.89477 -10.68973 -10.56385 -10.35046 -9.66838 -9.18721 -8.10001 -6.24318 1.37254 1.38434 1.46511 1.53536 2.08010 2.40637 2.79724 3.15317 3.32864 3.43717 3.80241 3.83501 3.86124 4.04233 4.13404 4.28419 4.29542 4.32844 4.37590 4.42991 4.47503 4.55044 4.57700 4.65414 4.66312 4.72461 4.79424 4.80805 4.82046 4.84308 4.89213 4.96130 5.00163 5.07249 5.12257 5.14566 5.18278 5.29188 5.30368 5.34372 5.41904 5.43175 5.53337 5.58027 5.60657 5.66811 5.99093 6.07414 6.09960 6.21708 6.30354 6.39755 6.85842 7.12735 7.43067 8.93459 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.004484 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.039552 B = 6242.582216 C = 7074.727875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.623 5.623 3 C 0.107 3.893 4 C 0.108 3.892 5 C -0.190 4.190 6 C 0.509 3.491 7 O -0.582 6.582 8 C -0.091 4.091 9 C -0.118 4.118 10 C -0.112 4.112 11 C 0.047 3.953 12 N -0.510 5.510 13 C 0.088 3.912 14 C -0.148 4.148 15 C -0.089 4.089 16 C 0.052 3.948 17 C -0.541 4.541 18 H 0.040 0.960 19 C 0.018 3.982 20 N -0.912 5.912 21 Si 0.949 3.051 22 H -0.275 1.275 23 H -0.278 1.278 24 H -0.273 1.273 25 C -0.096 4.096 26 C -0.087 4.087 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.034 0.966 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.027 0.973 46 H 0.028 0.972 47 H -0.010 1.010 48 H 0.262 0.738 49 H 0.020 0.980 50 H 0.062 0.938 51 H 0.042 0.958 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.546 9.964 -19.430 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.356 5.356 3 C -0.015 4.015 4 C 0.017 3.983 5 C -0.231 4.231 6 C 0.298 3.702 7 O -0.463 6.463 8 C -0.129 4.129 9 C -0.156 4.156 10 C -0.149 4.149 11 C -0.080 4.080 12 N -0.232 5.232 13 C -0.020 4.020 14 C -0.186 4.186 15 C -0.127 4.127 16 C 0.034 3.966 17 C -0.579 4.579 18 H 0.058 0.942 19 C -0.181 4.181 20 N -0.551 5.551 21 Si 0.775 3.225 22 H -0.201 1.201 23 H -0.203 1.203 24 H -0.198 1.198 25 C -0.135 4.135 26 C -0.126 4.126 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.147 0.853 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.009 0.991 48 H 0.071 0.929 49 H 0.039 0.961 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.218 10.037 -19.163 23.514 hybrid contribution -1.161 -1.937 1.159 2.538 sum 8.057 8.100 -18.003 21.322 Atomic orbital electron populations 1.21639 0.77663 1.03047 1.02699 1.48449 1.07115 1.07736 1.72319 1.22460 0.88673 0.86419 1.03954 1.21578 0.96226 0.91807 0.88697 1.23404 0.92991 1.00635 1.06097 1.21368 0.90685 0.84101 0.74044 1.90701 1.79732 1.23191 1.52654 1.21460 0.91928 1.00410 0.99119 1.21616 0.97172 1.01691 0.95114 1.21587 0.96750 1.00819 0.95772 1.22244 0.88785 0.97135 0.99825 1.62033 1.01983 1.56130 1.03007 1.21769 0.94877 0.90281 0.95101 1.22532 0.98457 0.97651 0.99948 1.21318 0.96752 0.97614 0.97014 1.18562 0.94240 0.92993 0.90813 1.21539 1.18759 1.15667 1.01949 0.94178 1.25666 0.98710 0.95614 0.98076 1.69995 1.42241 1.26468 1.16395 0.85753 0.79984 0.78787 0.77990 1.20053 1.20276 1.19809 1.21352 0.95463 0.97516 0.99140 1.21388 0.98035 0.98671 0.94464 0.90593 0.93562 0.89063 0.89100 0.86844 0.85340 0.88303 0.88710 0.89367 0.92187 0.89487 0.90795 0.90893 0.92104 0.94832 0.89791 0.92440 0.91391 0.95459 0.95349 0.99140 0.92920 0.96093 0.91980 0.93927 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.12 10.91 127.77 1.39 3.52 16 2 N -0.62 -15.50 1.97 -843.44 -1.66 -17.16 16 3 C 0.11 1.89 5.69 86.59 0.49 2.38 16 4 C 0.11 2.01 0.71 4.06 0.00 2.01 16 5 C -0.19 -4.31 4.36 30.41 0.13 -4.17 16 6 C 0.51 15.59 5.42 87.93 0.48 16.07 16 7 O -0.58 -23.69 17.30 -3.05 -0.05 -23.74 16 8 C -0.09 -1.03 4.65 30.42 0.14 -0.89 16 9 C -0.12 -1.38 5.81 30.72 0.18 -1.21 16 10 C -0.11 -1.78 6.07 30.65 0.19 -1.60 16 11 C 0.05 1.11 3.95 86.30 0.34 1.46 16 12 N -0.51 -12.45 4.34 -821.64 -3.57 -16.02 16 13 C 0.09 2.90 1.42 44.92 0.06 2.97 16 14 C -0.15 -5.59 3.42 30.59 0.10 -5.48 16 15 C -0.09 -4.21 5.14 30.59 0.16 -4.06 16 16 C 0.05 2.80 2.10 -11.54 -0.02 2.78 16 17 C -0.54 -31.98 8.57 25.60 0.22 -31.76 16 18 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 19 C 0.02 1.05 5.30 84.66 0.45 1.50 16 20 N -0.91 -53.92 11.31 21.45 0.24 -53.67 16 21 Si 0.95 45.44 29.54 68.60 2.03 47.46 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.10 -4.70 4.98 30.59 0.15 -4.55 16 26 C -0.09 -3.38 5.39 30.59 0.17 -3.22 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.37 7.93 -2.39 -0.02 1.35 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 1.69 7.67 -2.39 -0.02 1.67 16 31 H 0.11 1.24 7.85 -2.39 -0.02 1.22 16 32 H 0.13 2.19 7.80 -2.39 -0.02 2.17 16 33 H 0.10 2.60 3.93 -2.38 -0.01 2.59 16 34 H 0.09 0.67 8.05 -2.38 -0.02 0.65 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.74 7.59 -2.39 -0.02 0.72 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.68 7.04 -2.39 -0.02 1.66 16 41 H 0.03 0.84 5.00 -2.39 -0.01 0.83 16 42 H 0.08 2.86 4.50 -2.39 -0.01 2.85 16 43 H 0.06 2.18 6.44 -2.38 -0.02 2.16 16 44 H 0.07 2.49 3.26 -2.39 -0.01 2.48 16 45 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 47 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 48 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 49 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.06 3.42 6.06 -2.39 -0.01 3.41 16 51 H 0.04 1.71 7.24 -2.38 -0.02 1.69 16 52 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -72.31 365.66 2.52 -69.79 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.90 Total: 17.59 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 4.63 Total: -24.26 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -4.99 Total: -86.85 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.31 2.52 -69.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.816 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds