Wall clock time and date at job start Tue Mar 31 2020 12:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33467 * 118.05714 * 2 1 4 4 O 1.21286 * 118.28005 * 2.34885 * 3 2 1 5 5 C 1.50164 * 123.44213 * 182.37102 * 3 2 1 6 6 C 1.53062 * 110.03081 * 342.45417 * 5 3 2 7 7 C 1.53510 * 108.35363 * 48.88487 * 6 5 3 8 8 H 1.08997 * 110.57402 * 172.16375 * 7 6 5 9 9 C 1.53087 * 108.72693 * 51.61709 * 7 6 5 10 10 N 1.46774 * 109.80115 * 183.82531 * 9 7 6 11 11 C 1.46898 * 111.00087 * 186.12797 * 10 9 7 12 12 C 1.53002 * 109.47099 * 60.00405 * 11 10 9 13 13 C 1.52995 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47110 * 299.99787 * 13 12 11 15 15 C 1.50700 * 109.47083 * 300.00082 * 14 13 12 16 16 H 1.08004 * 120.00167 * 27.87156 * 15 14 13 17 17 C 1.37883 * 120.00074 * 207.87270 * 15 14 13 18 18 N 1.31512 * 119.99866 * 186.82716 * 17 15 14 19 19 Si 1.86801 * 120.00022 * 6.81981 * 17 15 14 20 20 H 1.48495 * 109.46790 * 84.92642 * 19 17 15 21 21 H 1.48500 * 109.47091 * 204.92667 * 19 17 15 22 22 H 1.48500 * 109.46945 * 324.92871 * 19 17 15 23 23 C 1.53001 * 109.47329 * 60.00455 * 14 13 12 24 24 C 1.52995 * 109.47076 * 180.02562 * 11 10 9 25 25 C 1.46913 * 110.98608 * 62.18206 * 10 9 7 26 26 C 1.53026 * 109.24248 * 297.42447 * 25 10 9 27 27 C 1.45492 * 118.04932 * 180.02562 * 2 1 3 28 28 H 1.09005 * 108.64064 * 279.76268 * 27 2 1 29 29 H 1.09001 * 109.47125 * 213.48224 * 1 2 3 30 30 H 1.08996 * 109.46965 * 333.47895 * 1 2 3 31 31 H 1.09000 * 109.46798 * 93.48288 * 1 2 3 32 32 H 1.08994 * 109.38201 * 102.62903 * 5 3 2 33 33 H 1.09003 * 109.37995 * 222.39829 * 5 3 2 34 34 H 1.08994 * 109.69010 * 289.16656 * 6 5 3 35 35 H 1.09001 * 109.68751 * 168.59552 * 6 5 3 36 36 H 1.09005 * 109.41383 * 63.72491 * 9 7 6 37 37 H 1.08997 * 109.36178 * 303.89635 * 9 7 6 38 38 H 1.09007 * 109.46960 * 300.00257 * 11 10 9 39 39 H 1.08994 * 109.47023 * 59.99557 * 12 11 10 40 40 H 1.09004 * 109.46931 * 299.99803 * 12 11 10 41 41 H 1.09005 * 109.46919 * 179.97438 * 13 12 11 42 42 H 1.09003 * 109.47701 * 60.00137 * 13 12 11 43 43 H 1.09004 * 109.47294 * 180.02562 * 14 13 12 44 44 H 0.96999 * 120.00222 * 179.97438 * 18 17 15 45 45 H 1.08994 * 109.47133 * 59.99557 * 23 14 13 46 46 H 1.08993 * 109.46975 * 180.02562 * 23 14 13 47 47 H 1.09005 * 109.47460 * 59.99932 * 24 11 10 48 48 H 1.09003 * 109.47532 * 300.00233 * 24 11 10 49 49 H 1.09002 * 109.51470 * 57.35992 * 25 10 9 50 50 H 1.09005 * 109.50936 * 177.50083 * 25 10 9 51 51 H 1.08999 * 109.44087 * 298.87406 * 26 25 10 52 52 H 1.08992 * 109.41668 * 178.95246 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0928 1.1778 0.0000 4 8 1.4213 2.1869 0.0438 5 6 3.5869 1.3193 -0.0518 6 6 4.2524 -0.0046 0.3320 7 6 3.5926 -1.1298 -0.4773 8 1 4.1290 -2.0682 -0.3366 9 6 3.6066 -0.7433 -1.9585 10 7 2.8995 -1.7612 -2.7447 11 6 3.0211 -1.4931 -4.1839 12 6 4.4984 -1.5047 -4.5818 13 6 4.6251 -1.2249 -6.0806 14 6 3.8770 -2.3040 -6.8659 15 6 4.4704 -3.6539 -6.5550 16 1 4.9463 -3.8279 -5.6012 17 6 4.4059 -4.6669 -7.4881 18 7 4.8014 -5.8801 -7.1700 19 14 3.7564 -4.3161 -9.2041 20 1 4.8577 -3.7950 -10.0531 21 1 3.2241 -5.5689 -9.7976 22 1 2.6713 -3.3054 -9.1256 23 6 2.3996 -2.2925 -6.4681 24 6 2.2726 -2.5724 -4.9687 25 6 1.4892 -1.8504 -2.3431 26 6 1.4084 -2.2895 -0.8794 27 6 2.1492 -1.2840 -0.0006 28 1 2.1585 -1.6743 1.0172 29 1 -0.3633 -0.8571 0.5669 30 1 -0.3633 0.9195 0.4589 31 1 -0.3633 -0.0624 -1.0258 32 1 3.8891 1.5966 -1.0616 33 1 3.9011 2.0957 0.6457 34 1 4.1152 -0.1893 1.3973 35 1 5.3167 0.0388 0.1004 36 1 4.6378 -0.6701 -2.3042 37 1 3.1127 0.2201 -2.0852 38 1 2.5917 -0.5169 -4.4092 39 1 4.9277 -2.4809 -4.3565 40 1 5.0313 -0.7356 -4.0227 41 1 5.6776 -1.2327 -6.3640 42 1 4.1959 -0.2485 -6.3056 43 1 3.9676 -2.1050 -7.9338 44 1 4.7557 -6.5929 -7.8264 45 1 1.9704 -1.3161 -6.6929 46 1 1.8668 -3.0615 -7.0272 47 1 1.2201 -2.5638 -4.6852 48 1 2.7015 -3.5488 -4.7435 49 1 1.0156 -0.8753 -2.4573 50 1 0.9774 -2.5801 -2.9707 51 1 1.8655 -3.2730 -0.7699 52 1 0.3636 -2.3387 -0.5730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:26 Heat of formation + Delta-G solvation = -39.429735 kcal Electronic energy + Delta-G solvation = -29558.966624 eV Core-core repulsion = 25943.432808 eV Total energy + Delta-G solvation = -3615.533817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.38578 -39.02502 -37.53694 -35.19648 -34.89361 -32.43573 -31.45703 -30.32604 -29.17581 -28.65605 -27.32495 -25.12274 -24.80267 -23.67098 -22.18532 -21.27103 -20.96666 -20.11579 -18.71199 -17.78197 -16.87052 -16.50897 -16.46588 -16.09784 -15.94165 -15.11705 -14.62283 -14.16602 -14.10637 -14.01420 -13.70657 -13.61951 -13.30296 -13.08481 -13.04048 -12.69661 -12.43673 -12.39351 -12.31729 -12.16197 -12.06310 -11.59608 -11.36303 -11.30821 -11.06177 -10.98348 -10.90172 -10.61829 -10.54386 -10.34913 -10.25198 -10.02814 -9.78122 -9.65368 -9.21812 -9.06172 -8.84559 -8.74560 -8.40185 -8.01001 -6.01305 -3.97823 2.49824 2.85039 3.31187 3.40188 3.42163 4.00064 4.31701 4.35408 4.42780 4.47397 4.57098 4.92227 4.92913 5.06428 5.11321 5.21147 5.25355 5.28902 5.32755 5.40774 5.43218 5.50519 5.54358 5.57920 5.61566 5.67762 5.68724 5.79530 5.87120 5.92517 5.95846 5.96656 6.08912 6.17434 6.22205 6.30840 6.32975 6.37424 6.43230 6.47373 6.72331 6.80459 7.05309 7.13125 7.20328 7.28560 7.30145 7.37814 7.51546 7.55118 7.88009 8.01372 8.61070 9.06219 9.63461 11.11696 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.003388 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.689951 B = 8263.210395 C = 8398.638046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.597 5.597 3 C 0.517 3.483 4 O -0.562 6.562 5 C -0.137 4.137 6 C -0.118 4.118 7 C -0.094 4.094 8 H 0.104 0.896 9 C 0.054 3.946 10 N -0.527 5.527 11 C 0.097 3.903 12 C -0.101 4.101 13 C -0.099 4.099 14 C 0.010 3.990 15 C -0.499 4.499 16 H 0.079 0.921 17 C 0.069 3.931 18 N -0.903 5.903 19 Si 0.871 3.129 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.265 1.265 23 C -0.107 4.107 24 C -0.098 4.098 25 C 0.051 3.949 26 C -0.127 4.127 27 C 0.146 3.854 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.031 0.969 43 H 0.025 0.975 44 H 0.261 0.739 45 H 0.025 0.975 46 H 0.051 0.949 47 H 0.037 0.963 48 H 0.088 0.912 49 H 0.028 0.972 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 9.714 15.854 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.329 5.329 3 C 0.306 3.694 4 O -0.441 6.441 5 C -0.177 4.177 6 C -0.156 4.156 7 C -0.113 4.113 8 H 0.122 0.878 9 C -0.074 4.074 10 N -0.251 5.251 11 C -0.010 4.010 12 C -0.139 4.139 13 C -0.137 4.137 14 C -0.009 4.009 15 C -0.537 4.537 16 H 0.097 0.903 17 C -0.131 4.131 18 N -0.541 5.541 19 Si 0.699 3.301 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.190 1.190 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.077 4.077 26 C -0.165 4.165 27 C 0.043 3.957 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.107 0.893 49 H 0.046 0.954 50 H 0.103 0.897 51 H 0.108 0.892 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.956 9.583 15.903 19.218 hybrid contribution -0.786 0.729 -1.245 1.643 sum -5.742 10.312 14.658 18.819 Atomic orbital electron populations 1.21689 0.79956 1.03132 1.01947 1.47222 1.07270 1.05926 1.72502 1.20187 0.90995 0.82643 0.75541 1.90697 1.66787 1.35702 1.50924 1.21699 0.91109 0.99881 1.04972 1.21719 1.00630 0.93090 1.00164 1.21539 0.94284 1.00297 0.95205 0.87789 1.22246 1.00224 0.92886 0.92073 1.61997 1.11665 1.46732 1.04716 1.21601 0.97594 0.96730 0.85110 1.21536 0.93957 1.02275 0.96086 1.21430 1.00226 0.97261 0.94806 1.19151 0.91366 0.95616 0.94788 1.21031 1.36383 0.93244 1.03042 0.90311 1.25035 0.94937 0.94962 0.98202 1.69914 1.48723 1.00782 1.34705 0.86984 0.79833 0.77517 0.85797 1.20515 1.21888 1.19005 1.21725 0.99762 0.97956 0.95113 1.21496 0.96940 1.00154 0.94931 1.22141 0.90002 1.00040 0.95477 1.21921 1.00438 0.99245 0.94895 1.20861 0.92485 0.82923 0.99438 0.91318 0.91305 0.90225 0.92629 0.88041 0.88404 0.90993 0.90017 0.89681 0.95326 0.95848 0.89679 0.94259 0.92620 0.95050 0.95647 0.92915 0.95627 0.93033 0.94437 0.89306 0.95424 0.89683 0.89198 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 8.80 59.85 0.53 1.26 16 2 N -0.60 -6.41 2.66 -175.58 -0.47 -6.88 16 3 C 0.52 6.47 6.64 -11.83 -0.08 6.39 16 4 O -0.56 -9.10 16.15 5.55 0.09 -9.01 16 5 C -0.14 -1.30 5.37 -28.11 -0.15 -1.45 16 6 C -0.12 -0.91 5.66 -26.43 -0.15 -1.06 16 7 C -0.09 -0.89 2.83 -90.42 -0.26 -1.14 16 8 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 9 C 0.05 0.65 3.90 -3.85 -0.02 0.63 16 10 N -0.53 -7.45 4.53 -226.67 -1.03 -8.48 16 11 C 0.10 1.61 1.94 -67.72 -0.13 1.48 16 12 C -0.10 -1.78 4.76 -26.73 -0.13 -1.91 16 13 C -0.10 -1.91 5.44 -26.74 -0.15 -2.06 16 14 C 0.01 0.22 2.14 -91.77 -0.20 0.02 16 15 C -0.50 -13.11 7.29 -34.44 -0.25 -13.36 16 16 H 0.08 2.24 6.31 -52.48 -0.33 1.91 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 19 Si 0.87 21.21 26.43 -169.99 -4.49 16.72 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.27 -6.20 6.36 56.52 0.36 -5.84 16 23 C -0.11 -2.20 5.25 -26.70 -0.14 -2.34 16 24 C -0.10 -1.82 4.64 -26.70 -0.12 -1.94 16 25 C 0.05 0.65 5.03 -3.80 -0.02 0.63 16 26 C -0.13 -1.23 5.20 -26.87 -0.14 -1.37 16 27 C 0.15 1.36 2.64 -68.73 -0.18 1.17 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.51 7.22 -51.93 -0.37 0.13 16 30 H 0.08 0.87 7.03 -51.93 -0.37 0.50 16 31 H 0.06 0.56 7.26 -51.93 -0.38 0.18 16 32 H 0.10 0.98 6.81 -51.93 -0.35 0.62 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.04 5.98 -51.93 -0.31 0.73 16 37 H 0.03 0.37 5.48 -51.93 -0.28 0.09 16 38 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.08 1.72 6.29 -51.93 -0.33 1.40 16 40 H 0.04 0.61 6.27 -51.93 -0.33 0.28 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.03 0.59 5.65 -51.93 -0.29 0.30 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 1.12 7.17 -51.93 -0.37 0.75 16 47 H 0.04 0.63 6.21 -51.93 -0.32 0.31 16 48 H 0.09 1.92 7.22 -51.93 -0.37 1.54 16 49 H 0.03 0.37 6.84 -51.93 -0.36 0.02 16 50 H 0.08 1.13 5.88 -51.93 -0.31 0.83 16 51 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.07 0.59 6.50 -51.93 -0.34 0.25 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -30.87 361.17 -10.17 -41.05 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.81 Total: 0.47 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.68 Total: -13.21 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.72 Total: -41.45 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.49 Total: 16.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.87 -10.17 -41.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.616 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds