Wall clock time and date at job start Tue Mar 31 2020 12:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50710 * 119.99641 * 2 1 4 4 C 1.52995 * 109.46920 * 124.45566 * 3 2 1 5 5 C 1.50701 * 109.47254 * 305.48059 * 4 3 2 6 6 O 1.21278 * 120.00474 * 110.13285 * 5 4 3 7 7 N 1.34784 * 120.00036 * 290.13390 * 5 4 3 8 8 C 1.47429 * 125.64453 * 3.80776 * 7 5 4 9 9 C 1.54911 * 104.82574 * 155.83397 * 8 7 5 10 10 C 1.55154 * 101.58226 * 37.01071 * 9 8 7 11 11 H 1.09004 * 110.72083 * 83.03535 * 10 9 8 12 12 N 1.46500 * 110.71817 * 206.12886 * 10 9 8 13 13 C 1.46502 * 120.00148 * 56.16286 * 12 10 9 14 14 C 1.36938 * 119.99924 * 236.15472 * 12 10 9 15 15 H 1.07999 * 120.00470 * 31.65923 * 14 12 10 16 16 C 1.38813 * 120.00013 * 211.65241 * 14 12 10 17 17 N 1.31625 * 119.99896 * 6.69689 * 16 14 12 18 18 Si 1.86799 * 120.00208 * 186.68976 * 16 14 12 19 19 H 1.48498 * 109.47380 * 94.99802 * 18 16 14 20 20 H 1.48505 * 109.47237 * 215.00214 * 18 16 14 21 21 H 1.48502 * 109.47110 * 335.00134 * 18 16 14 22 22 C 1.47316 * 125.61398 * 183.94620 * 7 5 4 23 23 C 1.52999 * 109.47280 * 65.48271 * 4 3 2 24 24 C 1.52997 * 109.46973 * 180.02562 * 23 4 3 25 25 C 1.53000 * 109.47062 * 299.99731 * 24 23 4 26 26 C 1.52993 * 109.47439 * 60.00079 * 25 24 23 27 27 C 1.53000 * 109.47072 * 185.48196 * 4 3 2 28 28 H 1.07997 * 120.00643 * 5.02860 * 1 2 3 29 29 H 1.08002 * 119.99428 * 185.02608 * 1 2 3 30 30 H 1.07995 * 120.00620 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46824 * 4.45432 * 3 2 1 32 32 H 1.08995 * 109.47137 * 244.45581 * 3 2 1 33 33 H 1.08999 * 110.36672 * 36.99929 * 8 7 5 34 34 H 1.08997 * 110.45823 * 274.72226 * 8 7 5 35 35 H 1.08993 * 111.00722 * 278.93246 * 9 8 7 36 36 H 1.09002 * 110.99656 * 155.08019 * 9 8 7 37 37 H 1.08991 * 109.47244 * 85.31642 * 13 12 10 38 38 H 1.09002 * 109.47192 * 205.32466 * 13 12 10 39 39 H 1.08997 * 109.46465 * 325.31765 * 13 12 10 40 40 H 0.97000 * 119.99446 * 179.97438 * 17 16 14 41 41 H 1.09005 * 110.06444 * 61.75848 * 22 7 5 42 42 H 1.08994 * 109.85204 * 300.49224 * 22 7 5 43 43 H 1.08996 * 109.46753 * 299.99598 * 23 4 3 44 44 H 1.08990 * 109.47459 * 59.99956 * 23 4 3 45 45 H 1.09009 * 109.47274 * 180.02562 * 24 23 4 46 46 H 1.09002 * 109.47572 * 59.99720 * 24 23 4 47 47 H 1.09005 * 109.47389 * 300.00205 * 25 24 23 48 48 H 1.09004 * 109.47489 * 180.02562 * 25 24 23 49 49 H 1.08997 * 109.47552 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.46813 * 60.00246 * 26 25 24 51 51 H 1.09002 * 109.46918 * 300.00007 * 27 4 3 52 52 H 1.08996 * 109.47242 * 59.99821 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0251 1.3389 1.1894 5 6 2.2607 1.0757 2.4612 6 8 2.4203 0.0333 3.0601 7 7 1.3995 1.9989 2.9331 8 6 1.0511 3.2680 2.2685 9 6 -0.3456 3.6377 2.8274 10 6 -0.2236 3.1734 4.3028 11 1 0.2685 3.9352 4.9075 12 7 -1.5412 2.8479 4.8543 13 6 -2.3887 1.8548 4.1895 14 6 -1.9807 3.4717 5.9914 15 1 -1.6765 4.4862 6.2027 16 6 -2.8173 2.8002 6.8724 17 7 -3.0822 1.5246 6.6853 18 14 -3.5668 3.7069 8.3234 19 1 -4.9234 4.1887 7.9589 20 1 -3.6637 2.7871 9.4853 21 1 -2.7092 4.8657 8.6796 22 6 0.6531 1.9076 4.1999 23 6 4.0986 0.2638 1.0079 24 6 5.0599 0.2971 2.1977 25 6 5.7245 1.6729 2.2781 26 6 4.6511 2.7480 2.4595 27 6 3.6896 2.7147 1.2692 28 1 -0.5401 0.9316 -0.0820 29 1 -0.5399 -0.9318 0.0819 30 1 1.8500 -0.9352 -0.0004 31 1 1.3577 2.1321 0.0798 32 1 2.6288 1.3984 -0.9272 33 1 1.0031 3.1298 1.1884 34 1 1.7771 4.0413 2.5195 35 1 -1.1317 3.0891 2.3089 36 1 -0.5176 4.7125 2.7691 37 1 -2.1187 0.8571 4.5351 38 1 -3.4340 2.0515 4.4276 39 1 -2.2437 1.9174 3.1110 40 1 -3.6665 1.0553 7.3012 41 1 1.3462 1.8674 5.0403 42 1 0.0220 1.0190 4.1944 43 1 3.6252 -0.7163 0.9511 44 1 4.6515 0.4541 0.0882 45 1 5.8250 -0.4685 2.0682 46 1 4.5067 0.1066 3.1173 47 1 6.2777 1.8635 1.3584 48 1 6.4097 1.6965 3.1254 49 1 5.1246 3.7280 2.5173 50 1 4.0979 2.5574 3.3792 51 1 4.2426 2.9050 0.3493 52 1 2.9250 3.4806 1.3985 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194183856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:46 Heat of formation + Delta-G solvation = -14.010771 kcal Electronic energy + Delta-G solvation = -29649.776397 eV Core-core repulsion = 26035.344829 eV Total energy + Delta-G solvation = -3614.431568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09038 -39.48762 -37.98049 -36.59453 -35.91826 -33.58394 -32.32145 -31.61772 -31.10118 -29.33159 -28.05270 -27.00531 -25.75486 -24.33707 -23.63838 -22.63156 -21.70542 -20.80788 -20.53500 -19.62930 -18.93260 -17.48043 -17.40793 -16.82194 -16.61351 -16.24464 -15.73229 -15.33228 -15.24219 -15.07771 -14.91101 -14.63694 -14.53983 -14.41781 -14.02717 -13.83749 -13.53995 -13.30149 -13.18160 -13.02635 -12.92910 -12.82285 -12.76368 -12.52302 -12.38288 -12.28341 -12.24240 -12.08773 -11.97053 -11.95578 -11.79361 -11.51507 -11.36150 -11.00704 -10.79352 -10.62905 -10.52669 -10.14437 -9.52923 -8.70369 -7.88223 -5.44862 1.37176 1.46306 1.47084 1.56807 1.77567 2.06630 2.49323 3.27716 3.45107 3.56365 3.62811 3.79638 3.83058 3.92016 4.09072 4.10589 4.25588 4.28982 4.29549 4.35548 4.39735 4.45645 4.50234 4.57010 4.58781 4.66662 4.74303 4.79622 4.83950 4.87361 4.94806 5.00171 5.02084 5.09296 5.11859 5.15481 5.16549 5.25538 5.28599 5.31929 5.35304 5.40407 5.44475 5.49522 5.60497 5.62960 5.64343 5.73694 5.85866 6.34960 6.71424 7.12178 7.30738 7.80480 8.30317 9.16305 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.003688 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.122131 B = 7589.956544 C = 8090.681428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.082 4.082 4 C -0.058 4.058 5 C 0.537 3.463 6 O -0.592 6.592 7 N -0.609 5.609 8 C 0.098 3.902 9 C -0.141 4.141 10 C 0.167 3.833 11 H 0.079 0.921 12 N -0.599 5.599 13 C 0.182 3.818 14 C -0.271 4.271 15 H 0.076 0.924 16 C -0.046 4.046 17 N -0.938 5.938 18 Si 0.971 3.029 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.263 1.263 22 C 0.103 3.897 23 C -0.091 4.091 24 C -0.132 4.132 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.119 4.119 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.101 0.899 37 H -0.017 1.017 38 H 0.026 0.974 39 H 0.028 0.972 40 H 0.249 0.751 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.048 0.952 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.087 0.913 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.026 0.974 51 H 0.107 0.893 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.706 5.717 -18.455 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.181 4.181 3 C -0.119 4.119 4 C -0.061 4.061 5 C 0.328 3.672 6 O -0.473 6.473 7 N -0.342 5.342 8 C -0.024 4.024 9 C -0.180 4.180 10 C 0.058 3.942 11 H 0.097 0.903 12 N -0.320 5.320 13 C 0.037 3.963 14 C -0.401 4.401 15 H 0.093 0.907 16 C -0.242 4.242 17 N -0.583 5.583 18 Si 0.799 3.201 19 H -0.210 1.210 20 H -0.226 1.226 21 H -0.187 1.187 22 C -0.023 4.023 23 C -0.128 4.128 24 C -0.170 4.170 25 C -0.151 4.151 26 C -0.161 4.161 27 C -0.156 4.156 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.001 0.999 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.118 0.882 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.105 0.895 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.045 0.955 51 H 0.126 0.874 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.715 5.023 -18.060 24.462 hybrid contribution -1.017 -0.829 1.835 2.256 sum 14.698 4.195 -16.226 22.291 Atomic orbital electron populations 1.23911 0.96336 1.02113 1.01159 1.23046 0.96036 0.99241 0.99775 1.20993 0.97811 0.95338 0.97766 1.20829 0.95197 0.99278 0.90783 1.20939 0.78063 0.81476 0.86689 1.90622 1.66985 1.27668 1.62017 1.48593 1.42734 1.21112 1.21732 1.22885 0.95933 0.84928 0.98604 1.23231 0.96442 1.02721 0.95643 1.21568 0.84882 0.92965 0.94789 0.90280 1.43995 1.13089 1.46962 1.27972 1.20382 0.93636 0.90468 0.91790 1.19581 1.26877 0.95608 0.98012 0.90662 1.26077 1.02037 0.95782 1.00314 1.70218 1.39727 1.09525 1.38869 0.85197 0.78490 0.77766 0.78653 1.21015 1.22557 1.18695 1.22382 0.93768 1.00619 0.85563 1.21412 0.95129 0.97105 0.99183 1.21669 0.98407 0.98121 0.98794 1.21525 0.97369 0.93660 1.02539 1.21573 0.97184 0.99992 0.97394 1.21993 0.99456 0.93781 1.00385 0.87876 0.89360 0.88039 0.89492 0.86619 0.87647 0.88670 0.91543 0.88060 0.99862 0.95524 0.95356 0.94240 0.94875 0.95393 0.93280 0.88176 0.91657 0.94305 0.89493 0.92683 0.89631 0.95522 0.87446 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.85 14.31 67.79 0.97 -3.88 16 2 C -0.16 -3.73 8.09 25.65 0.21 -3.52 16 3 C -0.08 -1.40 4.57 29.85 0.14 -1.26 16 4 C -0.06 -1.20 0.28 -52.93 -0.02 -1.22 16 5 C 0.54 17.23 3.96 87.66 0.35 17.57 16 6 O -0.59 -25.09 14.42 -3.02 -0.04 -25.13 16 7 N -0.61 -19.33 3.31 -811.03 -2.68 -22.02 16 8 C 0.10 2.19 4.89 86.86 0.43 2.62 16 9 C -0.14 -4.01 6.63 31.99 0.21 -3.79 16 10 C 0.17 6.55 3.43 46.18 0.16 6.71 16 11 H 0.08 3.05 7.95 -2.38 -0.02 3.03 16 12 N -0.60 -29.73 2.91 -696.16 -2.02 -31.75 16 13 C 0.18 9.22 7.97 127.77 1.02 10.23 16 14 C -0.27 -14.63 9.52 84.03 0.80 -13.83 16 15 H 0.08 3.86 7.84 -2.91 -0.02 3.84 16 16 C -0.05 -2.59 5.15 84.86 0.44 -2.16 16 17 N -0.94 -56.82 10.99 21.65 0.24 -56.58 16 18 Si 0.97 44.85 29.56 68.60 2.03 46.87 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 C 0.10 4.26 6.53 86.67 0.57 4.82 16 23 C -0.09 -1.88 4.17 30.59 0.13 -1.75 16 24 C -0.13 -3.09 5.63 30.59 0.17 -2.92 16 25 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 26 C -0.12 -2.28 5.70 30.61 0.17 -2.10 16 27 C -0.12 -1.77 4.42 30.61 0.14 -1.64 16 28 H 0.10 2.31 7.86 -2.91 -0.02 2.29 16 29 H 0.09 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.10 2.43 7.00 -2.91 -0.02 2.41 16 31 H 0.09 1.33 4.79 -2.39 -0.01 1.32 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.77 4.50 -2.39 -0.01 1.76 16 34 H 0.10 1.69 6.92 -2.39 -0.02 1.67 16 35 H 0.07 2.05 6.14 -2.39 -0.01 2.04 16 36 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 37 H -0.02 -0.98 7.29 -2.39 -0.02 -0.99 16 38 H 0.03 1.44 7.12 -2.39 -0.02 1.42 16 39 H 0.03 1.23 6.14 -2.39 -0.01 1.22 16 40 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.03 1.39 6.78 -2.39 -0.02 1.38 16 43 H 0.05 1.23 6.61 -2.39 -0.02 1.21 16 44 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.04 1.26 5.88 -2.39 -0.01 1.25 16 47 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.03 0.68 7.22 -2.39 -0.02 0.67 16 51 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.09 1.19 4.12 -2.39 -0.01 1.18 16 Total: -1.00 -73.43 377.47 4.46 -68.97 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.89 Total: 17.60 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.05 Total: 2.03 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -4.47 Total: -110.34 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.04 Total: -25.13 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -73.43 4.46 -68.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194183856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.955 kcal (2) G-P(sol) polarization free energy of solvation -73.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds