Wall clock time and date at job start Tue Mar 31 2020 13:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47328 * 2 1 4 4 C 1.52998 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47333 * 304.99676 * 4 3 2 6 6 C 1.52995 * 109.47064 * 65.00270 * 4 3 2 7 7 C 1.53007 * 109.47313 * 185.00087 * 4 3 2 8 8 H 1.09000 * 109.87587 * 292.12971 * 7 4 3 9 9 C 1.54319 * 110.02293 * 53.24082 * 7 4 3 10 10 C 1.55135 * 103.01979 * 141.76759 * 9 7 4 11 11 C 1.54910 * 101.65247 * 324.34586 * 10 9 7 12 12 N 1.47433 * 109.89097 * 171.09034 * 7 4 3 13 13 C 1.38590 * 111.00066 * 3.69332 * 12 7 4 14 14 N 1.31218 * 126.46856 * 294.91172 * 13 12 7 15 15 N 1.28523 * 109.85451 * 180.02562 * 14 13 12 16 16 C 1.30288 * 110.05822 * 0.02562 * 15 14 13 17 17 C 1.50707 * 126.34815 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47249 * 90.02079 * 17 16 15 19 19 C 1.50695 * 109.46959 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00452 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99876 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00264 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00080 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47463 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.47202 * 299.99982 * 23 21 19 26 26 H 1.48500 * 109.47159 * 60.00224 * 23 21 19 27 27 N 1.36455 * 126.47589 * 115.22722 * 13 12 7 28 28 C 1.46509 * 127.13444 * 359.97438 * 27 13 12 29 29 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47050 * 299.99958 * 1 2 3 31 31 H 1.09002 * 109.47001 * 60.00447 * 1 2 3 32 32 H 1.09003 * 109.47211 * 240.00033 * 2 1 3 33 33 H 1.09000 * 109.47369 * 119.99942 * 2 1 3 34 34 H 1.09003 * 109.46948 * 59.99872 * 3 2 1 35 35 H 1.09001 * 109.47355 * 300.00129 * 3 2 1 36 36 H 1.09004 * 109.47101 * 187.82441 * 6 4 3 37 37 H 1.08997 * 109.47367 * 307.82317 * 6 4 3 38 38 H 1.09003 * 109.47737 * 67.82594 * 6 4 3 39 39 H 1.08998 * 110.70666 * 260.15087 * 9 7 4 40 40 H 1.09000 * 110.70517 * 23.20664 * 9 7 4 41 41 H 1.09003 * 110.99318 * 82.44079 * 10 9 7 42 42 H 1.09002 * 110.98858 * 206.21661 * 10 9 7 43 43 H 1.08997 * 110.37321 * 278.24001 * 11 10 9 44 44 H 1.08999 * 110.36950 * 155.89952 * 11 10 9 45 45 H 1.08995 * 109.46746 * 330.02081 * 17 16 15 46 46 H 1.09001 * 109.46736 * 210.02399 * 17 16 15 47 47 H 1.09007 * 109.46916 * 60.00492 * 18 17 16 48 48 H 1.08991 * 109.47592 * 300.00410 * 18 17 16 49 49 H 0.97000 * 119.99904 * 359.97438 * 22 21 19 50 50 H 1.08998 * 109.46485 * 270.19917 * 28 27 13 51 51 H 1.08995 * 109.46979 * 30.20022 * 28 27 13 52 52 H 1.09002 * 109.46679 * 150.19903 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 4.0800 2.8795 0.1264 8 1 3.8399 3.4384 -0.7781 9 6 3.4376 3.5628 1.3518 10 6 4.5997 4.4153 1.9259 11 6 5.8217 3.5038 1.6511 12 7 5.5384 2.8771 0.3423 13 6 6.0464 1.5888 0.2883 14 7 5.7842 0.6113 1.1235 15 7 6.4269 -0.4455 0.7743 16 6 7.1318 -0.2069 -0.2951 17 6 8.0210 -1.1872 -1.0160 18 6 7.2090 -1.9225 -2.0840 19 6 8.0983 -2.9022 -2.8052 20 1 9.1386 -2.9919 -2.5290 21 6 7.5840 -3.6843 -3.8175 22 7 6.3172 -3.5756 -4.1535 23 14 8.6862 -4.8993 -4.7110 24 1 7.8982 -5.6130 -5.7477 25 1 9.8071 -4.1693 -5.3558 26 1 9.2295 -5.8821 -3.7392 27 7 6.9183 1.0988 -0.6401 28 6 7.5024 1.8214 -1.7729 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.1615 0.7045 -1.2497 37 1 3.6076 -0.1366 -1.4643 38 1 3.8363 1.4956 -2.1365 39 1 2.6069 4.1993 1.0468 40 1 3.1059 2.8201 2.0774 41 1 4.6905 5.3615 1.3924 42 1 4.4696 4.5832 2.9950 43 1 5.9087 2.7420 2.4257 44 1 6.7339 4.0980 1.5978 45 1 8.4201 -1.9081 -0.3026 46 1 8.8435 -0.6512 -1.4897 47 1 6.8098 -1.2014 -2.7975 48 1 6.3865 -2.4583 -1.6104 49 1 5.7445 -2.9455 -3.6888 50 1 6.8550 1.7162 -2.6435 51 1 7.6010 2.8767 -1.5187 52 1 8.4855 1.4086 -1.9991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262902813.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:02 Heat of formation + Delta-G solvation = 81.868146 kcal Electronic energy + Delta-G solvation = -29195.950701 eV Core-core repulsion = 25617.969506 eV Total energy + Delta-G solvation = -3577.981195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.10052 -39.69911 -36.09187 -34.95032 -34.26583 -32.76136 -32.12744 -31.11217 -28.17784 -28.02178 -27.25569 -26.51656 -24.85296 -23.31154 -22.10584 -21.92131 -21.43542 -20.46745 -20.03801 -19.50889 -17.14751 -16.87129 -16.66457 -16.07689 -15.68476 -15.08571 -14.23421 -14.12919 -13.89931 -13.77426 -13.73269 -13.62272 -13.25282 -13.12085 -12.87544 -12.74616 -12.67737 -12.21538 -12.16281 -12.03192 -11.69749 -11.63769 -11.49402 -11.26839 -11.19684 -11.06873 -10.89949 -10.83505 -10.67609 -10.55210 -10.32031 -10.26051 -10.21781 -10.06900 -9.97915 -9.46690 -8.79899 -8.71273 -8.37479 -8.31749 -6.40659 -4.11435 2.02495 2.51313 3.17032 3.41853 3.44357 3.62678 3.77348 4.35636 4.47728 4.50752 4.59363 4.85293 4.89287 4.94859 4.96629 5.04531 5.17794 5.24679 5.27016 5.31117 5.34854 5.36899 5.43890 5.53522 5.56127 5.58468 5.61724 5.64758 5.70434 5.76851 5.78879 5.82382 5.92221 5.95444 6.03193 6.06217 6.18653 6.21267 6.24559 6.25663 6.33786 6.33879 6.53065 6.54946 6.61308 6.67147 6.89631 7.26332 7.39527 7.45317 8.09922 8.39730 8.81311 9.09803 9.61344 10.99672 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.003849 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.711567 B = 7273.246689 C = 8671.053537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.106 4.106 4 C -0.124 4.124 5 H 0.113 0.887 6 C -0.165 4.165 7 C 0.091 3.909 8 H 0.089 0.911 9 C -0.134 4.134 10 C -0.127 4.127 11 C 0.052 3.948 12 N -0.455 5.455 13 C 0.337 3.663 14 N -0.312 5.312 15 N -0.297 5.297 16 C 0.210 3.790 17 C -0.024 4.024 18 C 0.021 3.979 19 C -0.605 4.605 20 H 0.052 0.948 21 C 0.018 3.982 22 N -0.909 5.909 23 Si 1.069 2.931 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.287 1.287 27 N -0.470 5.470 28 C 0.082 3.918 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.005 0.995 48 H 0.016 0.984 49 H 0.269 0.731 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.330 17.866 8.851 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.145 4.145 4 C -0.144 4.144 5 H 0.131 0.869 6 C -0.223 4.223 7 C -0.017 4.017 8 H 0.107 0.893 9 C -0.172 4.172 10 C -0.165 4.165 11 C -0.074 4.074 12 N -0.181 5.181 13 C -0.018 4.018 14 N -0.156 5.156 15 N -0.136 5.136 16 C -0.057 4.057 17 C -0.064 4.064 18 C -0.017 4.017 19 C -0.643 4.643 20 H 0.070 0.930 21 C -0.187 4.187 22 N -0.544 5.544 23 Si 0.897 3.103 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.213 1.213 27 N -0.163 5.163 28 C -0.061 4.061 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.023 0.977 48 H 0.034 0.966 49 H 0.079 0.921 50 H 0.097 0.903 51 H 0.108 0.892 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.620 16.291 8.412 19.176 hybrid contribution 0.158 1.534 0.476 1.614 sum -5.462 17.825 8.888 20.654 Atomic orbital electron populations 1.21757 0.96169 1.01465 1.01290 1.21573 0.95321 0.96966 1.02620 1.21592 0.94503 0.96946 1.01413 1.22162 0.95722 0.95419 1.01070 0.86928 1.22307 1.02973 1.00821 0.96208 1.22490 0.83707 0.96732 0.98726 0.89310 1.22861 0.97985 0.99009 0.97355 1.22688 0.94072 0.98358 1.01394 1.23093 0.98996 0.97119 0.88237 1.60411 1.13810 1.10907 1.32942 1.21952 0.96188 0.93002 0.90700 1.74384 1.20454 0.96702 1.24063 1.74037 1.09356 1.18679 1.11552 1.25547 1.01272 0.83340 0.95515 1.20290 0.94979 0.93403 0.97750 1.19166 0.95759 0.94835 0.91961 1.21956 0.97361 1.23916 1.21106 0.92990 1.25843 0.98071 0.98842 0.95896 1.70780 1.05389 1.36242 1.42012 0.83544 0.74674 0.75853 0.76242 1.20764 1.21428 1.21308 1.46308 1.35406 1.11051 1.23540 1.21974 0.99746 0.97361 0.87056 0.92867 0.93060 0.93013 0.91680 0.91950 0.91973 0.92515 0.91351 0.92272 0.93472 0.90482 0.90477 0.90564 0.90329 0.91565 0.90050 0.89234 0.91112 0.97682 0.96584 0.92096 0.90287 0.89198 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.63 5.70 -26.73 -0.15 -1.78 16 3 C -0.11 -1.26 4.44 -26.73 -0.12 -1.38 16 4 C -0.12 -1.73 1.35 -90.62 -0.12 -1.85 16 5 H 0.11 1.89 5.24 -51.93 -0.27 1.62 16 6 C -0.17 -2.71 8.56 37.16 0.32 -2.40 16 7 C 0.09 1.07 3.01 -66.73 -0.20 0.87 16 8 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 9 C -0.13 -1.25 5.22 -24.91 -0.13 -1.38 16 10 C -0.13 -1.06 7.08 -24.59 -0.17 -1.23 16 11 C 0.05 0.58 6.67 -2.30 -0.02 0.56 16 12 N -0.46 -5.91 5.20 -163.82 -0.85 -6.76 16 13 C 0.34 5.41 3.76 -318.86 -1.20 4.21 16 14 N -0.31 -5.82 8.79 30.32 0.27 -5.55 16 15 N -0.30 -6.18 12.17 32.99 0.40 -5.78 16 16 C 0.21 4.07 6.57 -154.03 -1.01 3.06 16 17 C -0.02 -0.50 5.53 -27.88 -0.15 -0.65 16 18 C 0.02 0.53 4.27 -27.89 -0.12 0.41 16 19 C -0.61 -16.70 9.11 -34.44 -0.31 -17.01 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 21 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 22 N -0.91 -27.59 13.65 55.43 0.76 -26.84 16 23 Si 1.07 24.82 29.90 -169.99 -5.08 19.74 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 N -0.47 -7.73 1.89 -121.45 -0.23 -7.96 16 28 C 0.08 1.05 10.92 59.85 0.65 1.71 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.94 6.41 -51.93 -0.33 0.61 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.65 6.47 -51.93 -0.34 0.31 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.23 2.99 -51.93 -0.16 1.08 16 37 H 0.06 1.06 6.24 -51.93 -0.32 0.74 16 38 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.78 7.20 -51.93 -0.37 0.41 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.85 7.40 -51.93 -0.38 0.47 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 46 H 0.07 1.30 7.26 -51.93 -0.38 0.93 16 47 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 48 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 49 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 50 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 52 H 0.09 1.07 7.25 -51.93 -0.38 0.70 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -31.84 391.82 -10.48 -42.32 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -9.17 Total: 2.60 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -2.47 Total: -17.66 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.34 Total: -52.89 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.84 -10.48 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902813.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.183 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds