Wall clock time and date at job start Tue Mar 31 2020 13:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46735 * 2 1 4 4 C 1.50703 * 109.46851 * 185.21932 * 3 2 1 5 5 N 1.30294 * 126.34613 * 74.04380 * 4 3 2 6 6 N 1.28523 * 110.05452 * 179.97438 * 5 4 3 7 7 C 1.31222 * 109.86174 * 359.97438 * 6 5 4 8 8 N 1.38587 * 126.47513 * 180.02562 * 7 6 5 9 9 C 1.46899 * 110.99746 * 105.84967 * 8 7 6 10 10 C 1.50699 * 109.47544 * 304.96332 * 9 8 7 11 11 H 1.07999 * 119.99541 * 4.64521 * 10 9 8 12 12 C 1.37873 * 120.00371 * 184.64376 * 10 9 8 13 13 N 1.31520 * 119.99641 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00263 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46952 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46885 * 120.00102 * 14 12 10 17 17 H 1.48500 * 109.47377 * 240.00285 * 14 12 10 18 18 C 1.46891 * 110.99767 * 341.89846 * 8 7 6 19 19 C 1.53006 * 109.47052 * 189.40734 * 18 8 7 20 20 C 1.52992 * 117.50144 * 243.43030 * 19 18 8 21 21 C 1.52996 * 117.49871 * 174.76759 * 19 18 8 22 22 N 1.36454 * 107.05064 * 359.73721 * 7 6 5 23 23 C 1.46503 * 127.13879 * 180.26209 * 22 7 6 24 24 C 1.53005 * 109.46882 * 277.18320 * 23 22 7 25 25 C 1.53000 * 109.46848 * 175.97249 * 24 23 22 26 26 C 1.52997 * 109.46986 * 295.97320 * 24 23 22 27 27 H 1.09005 * 109.46678 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46950 * 299.99049 * 1 2 3 29 29 H 1.08995 * 109.47379 * 59.99864 * 1 2 3 30 30 H 1.09002 * 109.46950 * 240.00951 * 2 1 3 31 31 H 1.08995 * 109.47379 * 120.00136 * 2 1 3 32 32 H 1.08998 * 109.47459 * 305.22046 * 3 2 1 33 33 H 1.09003 * 109.46697 * 65.22640 * 3 2 1 34 34 H 1.09000 * 109.47237 * 64.96336 * 9 8 7 35 35 H 1.09001 * 109.46720 * 184.96040 * 9 8 7 36 36 H 0.97006 * 119.99662 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.47430 * 309.40748 * 18 8 7 38 38 H 1.08995 * 109.47693 * 69.40797 * 18 8 7 39 39 H 1.09004 * 115.54554 * 29.09948 * 19 18 8 40 40 H 1.08998 * 117.49896 * 359.97438 * 20 19 18 41 41 H 1.09000 * 117.49808 * 145.02128 * 20 19 18 42 42 H 1.09010 * 117.50042 * 214.97870 * 21 19 18 43 43 H 1.08996 * 117.49957 * 0.02562 * 21 19 18 44 44 H 1.09002 * 109.46719 * 37.17829 * 23 22 7 45 45 H 1.08992 * 109.47296 * 157.18153 * 23 22 7 46 46 H 1.08998 * 109.47319 * 55.97812 * 24 23 22 47 47 H 1.09003 * 109.47023 * 59.99849 * 25 24 23 48 48 H 1.08995 * 109.47043 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47690 * 300.00078 * 25 24 23 50 50 H 1.09007 * 109.46893 * 185.67699 * 26 24 23 51 51 H 1.08999 * 109.47050 * 305.67497 * 26 24 23 52 52 H 1.08992 * 109.47102 * 65.68069 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5414 1.4446 -0.1293 5 7 4.2238 1.1878 -1.2091 6 7 5.4828 1.2785 -0.9668 7 6 5.6726 1.6012 0.2909 8 7 6.8942 1.7889 0.9179 9 6 7.1510 3.2159 1.1537 10 6 7.0458 3.9673 -0.1484 11 1 6.7384 3.4515 -1.0460 12 6 7.3420 5.3130 -0.1937 13 7 7.7169 5.9410 0.8994 14 14 7.2123 6.2442 -1.8079 15 1 6.7739 5.3159 -2.8809 16 1 6.2217 7.3416 -1.6680 17 1 8.5377 6.8153 -2.1578 18 6 7.9829 1.1792 0.1429 19 6 9.2703 1.1985 0.9695 20 6 10.4414 2.0245 0.4338 21 6 10.4965 0.4956 0.3838 22 7 4.4399 1.7234 0.8631 23 6 4.1410 2.0761 2.2533 24 6 4.2423 0.8260 3.1296 25 6 4.0292 1.2117 4.5948 26 6 3.1714 -0.1815 2.7065 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6023 1.9827 -0.8395 33 1 1.7550 1.9286 0.9331 34 1 6.4165 3.6057 1.8584 35 1 8.1523 3.3416 1.5659 36 1 7.9257 6.8878 0.8675 37 1 7.7229 0.1490 -0.1005 38 1 8.1337 1.7430 -0.7776 39 1 9.1355 1.1584 2.0504 40 1 10.2949 2.5537 -0.5078 41 1 11.0774 2.5273 1.1623 42 1 11.1688 -0.0068 1.0794 43 1 10.3862 0.0196 -0.5906 44 1 4.8559 2.8221 2.6005 45 1 3.1319 2.4831 2.3160 46 1 5.2291 0.3785 3.0116 47 1 3.0423 1.6593 4.7128 48 1 4.1008 0.3211 5.2190 49 1 4.7920 1.9295 4.8963 50 1 3.1769 -1.0277 3.3936 51 1 2.1927 0.2979 2.7282 52 1 3.3818 -0.5325 1.6963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263389284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:21 Heat of formation + Delta-G solvation = 74.353531 kcal Electronic energy + Delta-G solvation = -29239.952209 eV Core-core repulsion = 25661.645157 eV Total energy + Delta-G solvation = -3578.307053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.84373 -39.44417 -38.01096 -37.11152 -35.86694 -34.62776 -34.09784 -31.08401 -29.49391 -28.24686 -27.97050 -27.34706 -26.96582 -24.55483 -23.16451 -23.04644 -22.24636 -21.59223 -20.87394 -20.77853 -18.75189 -17.96176 -17.39132 -17.22024 -16.68747 -16.23094 -16.09228 -15.82198 -15.49645 -15.23492 -14.80828 -14.76793 -14.51908 -14.17366 -13.87625 -13.76307 -13.31336 -13.22253 -13.14179 -12.98155 -12.92339 -12.70090 -12.61512 -12.54223 -12.42363 -12.31243 -12.26178 -12.12814 -12.02967 -11.96928 -11.89176 -11.62019 -11.38349 -11.19920 -11.15944 -10.81982 -10.70223 -10.64319 -10.32166 -9.11325 -8.26796 -6.38666 0.99411 1.23962 1.27835 1.40557 1.50391 2.01484 2.30624 2.90221 3.02904 3.12343 3.46672 3.63254 3.79429 3.90676 3.95981 4.06032 4.10575 4.15705 4.17991 4.24167 4.31713 4.41476 4.45052 4.55288 4.60861 4.69144 4.70444 4.76295 4.82357 4.82922 4.92364 4.94581 4.98510 5.00103 5.02567 5.08672 5.15110 5.18807 5.20176 5.27158 5.28442 5.32923 5.36344 5.38517 5.41358 5.43728 5.52478 5.66151 5.76205 5.95115 6.02982 6.53750 6.76090 7.30594 7.96489 8.78068 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.004988 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.380051 B = 5611.683065 C = 6518.614366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.023 4.023 4 C 0.175 3.825 5 N -0.334 5.334 6 N -0.372 5.372 7 C 0.390 3.610 8 N -0.454 5.454 9 C 0.214 3.786 10 C -0.552 4.552 11 H 0.045 0.955 12 C 0.032 3.968 13 N -0.911 5.911 14 Si 0.937 3.063 15 H -0.288 1.288 16 H -0.275 1.275 17 H -0.270 1.270 18 C 0.120 3.880 19 C -0.149 4.149 20 C -0.181 4.181 21 C -0.151 4.151 22 N -0.467 5.467 23 C 0.110 3.890 24 C -0.101 4.101 25 C -0.136 4.136 26 C -0.145 4.145 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.014 0.986 35 H 0.043 0.957 36 H 0.266 0.734 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.115 0.885 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.050 0.950 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 -11.426 8.225 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.063 4.063 4 C -0.094 4.094 5 N -0.173 5.173 6 N -0.215 5.215 7 C 0.032 3.968 8 N -0.178 5.178 9 C 0.089 3.911 10 C -0.591 4.591 11 H 0.063 0.937 12 C -0.169 4.169 13 N -0.550 5.550 14 Si 0.764 3.236 15 H -0.213 1.213 16 H -0.201 1.201 17 H -0.195 1.195 18 C -0.008 4.008 19 C -0.168 4.168 20 C -0.218 4.218 21 C -0.188 4.188 22 N -0.160 5.160 23 C -0.012 4.012 24 C -0.121 4.121 25 C -0.194 4.194 26 C -0.202 4.202 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.137 0.863 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.133 0.867 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.097 0.903 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.578 -11.813 7.339 16.886 hybrid contribution 0.270 1.827 -0.626 1.950 sum -9.308 -9.986 6.713 15.213 Atomic orbital electron populations 1.21718 0.93127 1.02595 1.02662 1.21723 0.97524 0.93996 1.02890 1.20230 0.81089 1.00184 1.04761 1.25303 0.96343 1.03349 0.84412 1.73704 0.98282 1.21302 1.24033 1.74481 1.10020 1.25808 1.11226 1.22528 0.86756 0.99556 0.87953 1.59359 0.97389 1.17773 1.43237 1.19554 0.97139 0.79397 0.95034 1.21898 1.46090 0.95067 0.96025 0.93683 1.25420 0.94553 0.98213 0.98678 1.69995 1.46210 1.10565 1.28241 0.85828 0.78309 0.78599 0.80902 1.21337 1.20071 1.19503 1.21268 0.88312 0.97347 0.93853 1.22054 0.88636 1.06610 0.99488 1.22927 1.01936 0.94451 1.02495 1.23048 0.98966 0.93910 1.02872 1.46222 1.04806 1.52836 1.12162 1.22248 1.03697 0.98943 0.76283 1.21383 1.00287 0.94400 0.95992 1.21711 1.02643 1.02273 0.92732 1.22048 0.98562 0.99048 1.00557 0.91709 0.91153 0.92526 0.93274 0.90244 0.88851 0.88032 0.96826 0.93866 0.92446 0.91558 0.95306 0.87297 0.90968 0.88454 0.86281 0.88653 0.90552 0.86700 0.92495 0.90705 0.90800 0.93044 0.90938 0.90305 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -2.46 5.71 30.60 0.17 -2.29 16 3 C -0.02 -0.55 5.48 29.85 0.16 -0.39 16 4 C 0.17 6.29 6.36 137.64 0.87 7.16 16 5 N -0.33 -15.02 12.18 -49.53 -0.60 -15.62 16 6 N -0.37 -18.28 10.86 -58.00 -0.63 -18.91 16 7 C 0.39 17.49 5.64 260.11 1.47 18.96 16 8 N -0.45 -19.99 4.75 -710.38 -3.37 -23.37 16 9 C 0.21 10.75 4.97 85.56 0.43 11.18 16 10 C -0.55 -31.20 7.64 25.60 0.20 -31.00 16 11 H 0.04 2.76 6.33 -2.91 -0.02 2.74 16 12 C 0.03 1.82 5.46 84.65 0.46 2.28 16 13 N -0.91 -52.12 13.29 21.45 0.28 -51.84 16 14 Si 0.94 46.15 29.54 68.60 2.03 48.17 16 15 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 18 C 0.12 5.02 4.52 86.31 0.39 5.41 16 19 C -0.15 -5.24 4.65 -10.80 -0.05 -5.29 16 20 C -0.18 -6.23 10.16 30.62 0.31 -5.92 16 21 C -0.15 -4.20 10.25 30.62 0.31 -3.88 16 22 N -0.47 -17.29 2.48 -514.83 -1.28 -18.57 16 23 C 0.11 3.16 5.48 86.38 0.47 3.63 16 24 C -0.10 -2.33 3.13 -10.79 -0.03 -2.37 16 25 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 26 C -0.15 -2.77 7.24 71.98 0.52 -2.25 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.51 4.18 -2.39 -0.01 1.50 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.10 1.88 6.80 -2.39 -0.02 1.86 16 34 H 0.01 0.72 6.27 -2.39 -0.01 0.71 16 35 H 0.04 2.28 6.99 -2.39 -0.02 2.27 16 36 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 37 H 0.07 2.70 8.04 -2.39 -0.02 2.68 16 38 H 0.03 1.40 6.77 -2.39 -0.02 1.38 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.07 2.83 8.03 -2.39 -0.02 2.81 16 41 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 43 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.08 2.58 6.23 -2.39 -0.01 2.57 16 45 H 0.11 2.56 6.87 -2.39 -0.02 2.54 16 46 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 49 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 51 H 0.08 1.16 7.69 -2.39 -0.02 1.14 16 52 H 0.04 0.92 5.45 -2.39 -0.01 0.90 16 Total: -1.00 -70.59 402.15 4.38 -66.21 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.88 Total: 21.69 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 7.06 Total: -7.77 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -5.60 Total: -128.31 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -70.59 4.38 -66.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263389284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.563 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds