Wall clock time and date at job start Tue Mar 31 2020 13:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46705 * 2 1 4 4 C 1.53003 * 109.46705 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.50239 * 54.92429 * 4 3 2 6 6 C 1.53119 * 109.50513 * 294.80443 * 4 3 2 7 7 C 1.53125 * 109.15803 * 182.40145 * 6 4 3 8 8 C 1.53038 * 109.27372 * 57.66158 * 7 6 4 9 9 N 1.46852 * 109.52252 * 300.81396 * 8 7 6 10 10 C 1.38577 * 110.99972 * 185.84361 * 9 8 7 11 11 N 1.31219 * 126.47449 * 272.41848 * 10 9 8 12 12 N 1.28531 * 109.86077 * 179.69420 * 11 10 9 13 13 C 1.30293 * 110.04951 * 0.45368 * 12 11 10 14 14 C 1.50710 * 126.34085 * 179.82337 * 13 12 11 15 15 C 1.52997 * 109.46798 * 269.68443 * 14 13 12 16 16 C 1.50698 * 109.47076 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99963 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00054 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99937 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00157 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46801 * 269.99755 * 20 18 16 22 22 H 1.48504 * 109.47036 * 29.99658 * 20 18 16 23 23 H 1.48495 * 109.46998 * 149.99540 * 20 18 16 24 24 N 1.36452 * 126.47292 * 92.37496 * 10 9 8 25 25 C 1.46501 * 127.13747 * 0.02562 * 24 10 9 26 26 C 1.52998 * 109.46616 * 264.73151 * 25 24 10 27 27 C 1.46847 * 111.19790 * 61.74659 * 9 8 7 28 28 H 1.09006 * 109.46792 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46774 * 299.99351 * 1 2 3 30 30 H 1.08990 * 109.47730 * 59.99787 * 1 2 3 31 31 H 1.08995 * 109.46911 * 240.00353 * 2 1 3 32 32 H 1.08994 * 109.47252 * 120.00132 * 2 1 3 33 33 H 1.09007 * 109.46975 * 60.00772 * 3 2 1 34 34 H 1.08994 * 109.47373 * 300.00058 * 3 2 1 35 35 H 1.08995 * 109.52440 * 302.31194 * 6 4 3 36 36 H 1.09003 * 109.52107 * 62.43830 * 6 4 3 37 37 H 1.08998 * 109.50123 * 177.59784 * 7 6 4 38 38 H 1.08994 * 109.50412 * 297.67941 * 7 6 4 39 39 H 1.09005 * 109.46260 * 180.80350 * 8 7 6 40 40 H 1.08994 * 109.46760 * 60.83314 * 8 7 6 41 41 H 1.09000 * 109.46493 * 149.68817 * 14 13 12 42 42 H 1.08996 * 109.47394 * 29.68861 * 14 13 12 43 43 H 1.09008 * 109.47310 * 60.00204 * 15 14 13 44 44 H 1.08996 * 109.47490 * 300.00360 * 15 14 13 45 45 H 0.97005 * 119.99876 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.46955 * 24.73175 * 25 24 10 47 47 H 1.09003 * 109.47117 * 144.73657 * 25 24 10 48 48 H 1.08996 * 109.47419 * 54.82078 * 26 25 24 49 49 H 1.09004 * 109.46987 * 174.81536 * 26 25 24 50 50 H 1.09003 * 109.47434 * 294.81544 * 26 25 24 51 51 H 1.09006 * 109.46156 * 58.27187 * 27 9 8 52 52 H 1.08995 * 109.46274 * 178.24147 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9335 0.8523 -0.8418 6 6 4.0818 0.8369 1.3092 7 6 5.6118 0.8956 1.3260 8 6 6.0634 2.3486 1.1619 9 7 5.5491 2.8822 -0.1059 10 6 6.0470 4.1524 -0.3485 11 7 5.5284 5.2853 0.0630 12 7 6.2527 6.2684 -0.3381 13 6 7.2627 5.8253 -1.0317 14 6 8.3378 6.6609 -1.6778 15 6 7.9153 7.0220 -3.1032 16 6 8.9900 7.8581 -3.7490 17 1 9.8850 8.1066 -3.1980 18 6 8.8311 8.3048 -5.0437 19 7 9.7693 9.0340 -5.6075 20 14 7.2834 7.8744 -5.9971 21 1 7.4906 6.5977 -6.7267 22 1 6.1460 7.7266 -5.0538 23 1 6.9834 8.9567 -6.9685 24 7 7.1698 4.4614 -1.0598 25 6 8.0858 3.5258 -1.7171 26 6 9.2614 3.2240 -0.7856 27 6 4.0808 2.8797 -0.1264 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8898 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.6862 1.4039 2.1518 36 1 3.7553 -0.2005 1.3828 37 1 5.9806 0.5048 2.2743 38 1 6.0080 0.2960 0.5065 39 1 7.1525 2.3923 1.1591 40 1 5.6783 2.9443 1.9895 41 1 9.2690 6.0952 -1.7071 42 1 8.4850 7.5734 -1.1002 43 1 6.9839 7.5876 -3.0739 44 1 7.7681 6.1095 -3.6808 45 1 9.6573 9.3487 -6.5182 46 1 7.5572 2.6006 -1.9466 47 1 8.4583 3.9701 -2.6401 48 1 8.8836 2.8658 0.1720 49 1 9.8943 2.4590 -1.2354 50 1 9.8439 4.1320 -0.6297 51 1 3.7050 3.4730 0.7073 52 1 3.7299 3.3091 -1.0647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340295078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:01 Heat of formation + Delta-G solvation = 32.650365 kcal Electronic energy + Delta-G solvation = -27891.326141 eV Core-core repulsion = 24311.210703 eV Total energy + Delta-G solvation = -3580.115438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.07508 -40.39004 -36.90405 -36.83718 -35.81891 -34.24131 -33.46324 -32.08158 -31.48955 -30.31262 -27.44599 -27.25215 -25.81062 -24.95829 -23.45734 -23.18113 -22.54027 -21.52489 -21.30620 -20.55471 -19.05274 -18.30062 -17.53901 -17.08941 -16.41226 -16.22078 -15.95010 -15.72639 -15.47603 -15.17776 -14.94370 -14.89109 -14.74321 -14.58552 -14.39606 -14.07612 -13.80634 -13.62817 -13.51031 -13.20748 -12.97492 -12.87888 -12.61054 -12.45314 -12.35981 -12.21105 -12.13391 -12.02133 -12.00687 -11.86965 -11.66089 -11.55606 -11.46411 -11.39667 -11.23542 -11.16757 -11.07186 -10.79400 -10.36294 -9.60775 -8.32013 -6.35771 0.68624 1.21057 1.29788 1.34901 1.45563 1.71868 2.32103 2.59373 3.03066 3.39538 3.63047 3.66622 3.76069 3.82815 3.93811 4.02596 4.03322 4.13218 4.23335 4.28155 4.32903 4.37558 4.41828 4.49200 4.51417 4.54587 4.61725 4.66966 4.72411 4.73562 4.80245 4.80664 4.86731 4.94941 4.98500 5.01959 5.05808 5.14775 5.15497 5.19079 5.23572 5.27284 5.31099 5.38629 5.40671 5.50698 5.50754 5.56445 5.62434 5.71022 6.19384 6.22536 6.70947 7.28799 7.66834 8.83863 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.002972 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.785113 B = 9418.576208 C =10381.766835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.112 4.112 4 C -0.073 4.073 5 H 0.083 0.917 6 C -0.115 4.115 7 C -0.106 4.106 8 C 0.061 3.939 9 N -0.450 5.450 10 C 0.343 3.657 11 N -0.353 5.353 12 N -0.332 5.332 13 C 0.199 3.801 14 C -0.009 4.009 15 C 0.005 3.995 16 C -0.525 4.525 17 H 0.049 0.951 18 C 0.016 3.984 19 N -0.942 5.942 20 Si 0.938 3.062 21 H -0.260 1.260 22 H -0.265 1.265 23 H -0.282 1.282 24 N -0.462 5.462 25 C 0.096 3.904 26 C -0.159 4.159 27 C 0.077 3.923 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.007 0.993 44 H 0.018 0.982 45 H 0.268 0.732 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.061 0.939 49 H 0.107 0.893 50 H 0.054 0.946 51 H 0.040 0.960 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 -26.259 13.708 31.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.150 4.150 4 C -0.092 4.092 5 H 0.101 0.899 6 C -0.152 4.152 7 C -0.144 4.144 8 C -0.066 4.066 9 N -0.176 5.176 10 C -0.014 4.014 11 N -0.197 5.197 12 N -0.171 5.171 13 C -0.070 4.070 14 C -0.049 4.049 15 C -0.033 4.033 16 C -0.564 4.564 17 H 0.067 0.933 18 C -0.182 4.182 19 N -0.582 5.582 20 Si 0.762 3.238 21 H -0.185 1.185 22 H -0.190 1.190 23 H -0.207 1.207 24 N -0.155 5.155 25 C -0.025 4.025 26 C -0.216 4.216 27 C -0.050 4.050 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.026 0.974 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.136 0.864 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.126 0.874 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.141 -25.548 13.860 31.499 hybrid contribution 0.130 0.488 -0.846 0.985 sum -12.011 -25.060 13.014 30.686 Atomic orbital electron populations 1.21797 0.95936 1.01917 1.01617 1.21517 0.95726 0.95700 1.02663 1.21587 0.93559 0.97966 1.01899 1.21188 0.95384 0.92962 0.99684 0.89869 1.21715 0.95013 1.02229 0.96275 1.21600 0.96254 0.92794 1.03733 1.22358 1.00097 0.97468 0.86678 1.58823 1.10752 1.12287 1.35697 1.22653 0.88693 0.92763 0.97291 1.74427 1.25689 0.96015 1.23550 1.73931 1.04332 1.23834 1.15042 1.25255 0.99573 0.81626 1.00572 1.19961 0.92354 0.97186 0.95422 1.19368 0.95968 0.95818 0.92171 1.21274 1.04318 1.32149 0.98609 0.93291 1.25786 0.99184 0.94503 0.98719 1.70024 1.35682 1.37477 1.15017 0.85843 0.80500 0.78715 0.78709 1.18501 1.18955 1.20713 1.46566 1.21769 1.07241 1.39912 1.22224 0.90658 0.92887 0.96753 1.22125 0.96761 1.03272 0.99484 1.22131 0.82858 0.98948 1.01036 0.92090 0.92833 0.93278 0.91790 0.90783 0.92055 0.92663 0.92268 0.89133 0.88894 0.90022 0.90457 0.94874 0.88619 0.89505 0.97442 0.96359 0.92327 0.86402 0.88596 0.92016 0.87450 0.92720 0.94177 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.22 5.69 30.60 0.17 -1.05 16 3 C -0.11 -1.51 4.68 30.60 0.14 -1.37 16 4 C -0.07 -1.08 2.35 -10.74 -0.03 -1.10 16 5 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 6 C -0.11 -1.29 4.98 30.68 0.15 -1.14 16 7 C -0.11 -1.21 6.09 30.65 0.19 -1.03 16 8 C 0.06 1.13 5.40 86.32 0.47 1.60 16 9 N -0.45 -10.69 4.64 -706.13 -3.28 -13.96 16 10 C 0.34 11.02 6.70 260.11 1.74 12.76 16 11 N -0.35 -13.95 11.70 -58.01 -0.68 -14.63 16 12 N -0.33 -14.35 12.18 -49.53 -0.60 -14.96 16 13 C 0.20 7.66 7.32 137.64 1.01 8.67 16 14 C -0.01 -0.38 5.46 29.85 0.16 -0.21 16 15 C 0.01 0.26 4.02 29.85 0.12 0.38 16 16 C -0.53 -29.48 9.66 25.60 0.25 -29.23 16 17 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 18 C 0.02 0.93 5.47 84.65 0.46 1.39 16 19 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 20 Si 0.94 44.84 27.47 68.60 1.88 46.73 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 N -0.46 -14.59 2.81 -514.85 -1.45 -16.04 16 25 C 0.10 2.19 6.57 86.38 0.57 2.76 16 26 C -0.16 -2.83 10.24 71.98 0.74 -2.10 16 27 C 0.08 1.75 4.38 86.33 0.38 2.12 16 28 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.62 6.63 -2.39 -0.02 0.61 16 33 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.70 6.70 -2.39 -0.02 0.69 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.40 6.78 -2.38 -0.02 1.39 16 40 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.10 3.36 7.64 -2.39 -0.02 3.34 16 42 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 43 H 0.01 0.37 7.20 -2.38 -0.02 0.35 16 44 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 45 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 46 H 0.12 2.24 8.11 -2.39 -0.02 2.22 16 47 H 0.10 2.34 8.06 -2.39 -0.02 2.32 16 48 H 0.06 1.06 6.82 -2.39 -0.02 1.05 16 49 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.05 1.13 7.81 -2.39 -0.02 1.11 16 51 H 0.04 1.02 8.06 -2.38 -0.02 1.00 16 52 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -71.70 404.07 4.22 -67.48 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.80 Total: 11.43 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 7.24 Total: -8.46 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -5.70 Total: -117.16 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal Total: -71.70 4.22 -67.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340295078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.126 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds