Wall clock time and date at job start Tue Mar 31 2020 12:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47235 * 2 1 4 4 C 1.53003 * 109.46923 * 294.99888 * 3 2 1 5 5 C 1.52995 * 109.47406 * 299.99919 * 4 3 2 6 6 C 1.53001 * 109.47451 * 300.00422 * 5 4 3 7 7 N 1.46894 * 109.47367 * 179.97438 * 6 5 4 8 8 C 1.46903 * 110.99746 * 183.95113 * 7 6 5 9 9 C 1.38579 * 111.00371 * 60.00006 * 7 6 5 10 10 N 1.31222 * 126.47428 * 55.35122 * 9 7 6 11 11 N 1.28530 * 109.85760 * 179.97438 * 10 9 7 12 12 C 1.30287 * 110.05694 * 0.02562 * 11 10 9 13 13 C 1.50696 * 126.35025 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46952 * 89.97117 * 13 12 11 15 15 C 1.50708 * 109.47202 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99835 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00091 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99736 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47305 * 60.00125 * 19 17 15 21 21 H 1.48502 * 109.46785 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47196 * 299.99852 * 19 17 15 23 23 N 1.36450 * 126.47156 * 235.04766 * 9 7 6 24 24 C 1.46496 * 127.13771 * 0.03664 * 23 9 7 25 25 C 1.53003 * 109.47160 * 59.99427 * 6 5 4 26 26 C 1.53000 * 109.47424 * 175.00240 * 3 2 1 27 27 H 1.09004 * 109.47172 * 59.99816 * 1 2 3 28 28 H 1.08998 * 109.47152 * 300.00394 * 1 2 3 29 29 H 1.08996 * 109.47550 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47172 * 120.00184 * 2 1 3 31 31 H 1.09001 * 109.46891 * 240.00058 * 2 1 3 32 32 H 1.08999 * 109.47491 * 54.99933 * 3 2 1 33 33 H 1.08997 * 109.47162 * 60.00442 * 4 3 2 34 34 H 1.09001 * 109.46831 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.47486 * 180.02562 * 5 4 3 36 36 H 1.09004 * 109.46931 * 59.99696 * 5 4 3 37 37 H 1.09001 * 109.46760 * 299.99982 * 6 5 4 38 38 H 1.08998 * 109.47237 * 66.35136 * 8 7 6 39 39 H 1.09005 * 109.47002 * 186.34849 * 8 7 6 40 40 H 1.08993 * 109.47477 * 306.34518 * 8 7 6 41 41 H 1.08996 * 109.47784 * 209.97424 * 13 12 11 42 42 H 1.09002 * 109.47115 * 329.98188 * 13 12 11 43 43 H 1.08996 * 109.47704 * 300.00212 * 14 13 12 44 44 H 1.09000 * 109.46952 * 60.01020 * 14 13 12 45 45 H 0.97001 * 120.00363 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.47956 * 95.06027 * 24 23 9 47 47 H 1.09001 * 109.46963 * 215.06224 * 24 23 9 48 48 H 1.08998 * 109.47144 * 335.05610 * 24 23 9 49 49 H 1.09001 * 109.47106 * 180.02562 * 25 6 5 50 50 H 1.09001 * 109.46831 * 60.00597 * 25 6 5 51 51 H 1.08996 * 109.47721 * 179.97438 * 26 3 2 52 52 H 1.09004 * 109.46935 * 300.00246 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.2453 1.3699 -2.4890 6 6 3.7701 1.3716 -2.3633 7 7 4.3558 0.6447 -3.4975 8 6 5.8151 0.5448 -3.3617 9 6 4.0085 1.2383 -4.7006 10 7 4.2061 2.4908 -5.0382 11 7 3.7610 2.6983 -6.2259 12 6 3.2568 1.5999 -6.7124 13 6 2.6357 1.4289 -8.0747 14 6 3.7148 1.0207 -9.0796 15 6 3.0938 0.8503 -10.4422 16 1 2.0354 1.0169 -10.5779 17 6 3.8769 0.4818 -11.5155 18 7 5.1658 0.2794 -11.3503 19 14 3.1072 0.2713 -13.2045 20 1 2.4932 1.5540 -13.6321 21 1 4.1544 -0.1262 -14.1795 22 1 2.0621 -0.7820 -13.1444 23 7 3.4017 0.6292 -5.7602 24 6 2.9877 -0.7727 -5.8562 25 6 4.1749 0.6876 -1.0559 26 6 3.5648 1.4444 0.1257 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6054 1.9816 0.8418 33 1 0.5490 2.1253 -1.3969 34 1 1.9982 3.1543 -1.3072 35 1 1.9573 1.8574 -3.4203 36 1 1.8820 0.3422 -2.4889 37 1 4.1335 2.3993 -2.3633 38 1 6.0581 -0.0827 -2.5042 39 1 6.2347 0.1032 -4.2656 40 1 6.2353 1.5397 -3.2146 41 1 1.8693 0.6551 -8.0302 42 1 2.1841 2.3699 -8.3889 43 1 4.4812 1.7945 -9.1243 44 1 4.1664 0.0797 -8.7656 45 1 5.7167 0.0197 -12.1053 46 1 1.9372 -0.8613 -5.5793 47 1 3.1245 -1.1227 -6.8795 48 1 3.5936 -1.3775 -5.1815 49 1 5.2612 0.6892 -0.9662 50 1 3.8115 -0.3401 -1.0559 51 1 3.9283 2.4720 0.1252 52 1 3.8532 0.9570 1.0570 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341697880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:27 Heat of formation + Delta-G solvation = 55.011531 kcal Electronic energy + Delta-G solvation = -28224.206535 eV Core-core repulsion = 24645.060750 eV Total energy + Delta-G solvation = -3579.145785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.58087 -39.92325 -36.92786 -34.76553 -33.84672 -32.62723 -31.64638 -31.17483 -29.08660 -28.47439 -27.30989 -25.93729 -25.08673 -23.71246 -22.82874 -22.10968 -21.72292 -20.18916 -19.89654 -18.58271 -17.08430 -16.57962 -16.39779 -15.82699 -15.70097 -15.15364 -14.91666 -14.50654 -14.40573 -14.02482 -13.60348 -13.41740 -13.36703 -13.14251 -13.00369 -12.75398 -12.55716 -12.46742 -12.36604 -12.17515 -11.92393 -11.76144 -11.54585 -11.31137 -11.21445 -11.08747 -10.97723 -10.95203 -10.71423 -10.52258 -10.41269 -10.28051 -10.12702 -9.96025 -9.85240 -9.67371 -9.24804 -8.75655 -8.41640 -8.35617 -6.06036 -4.10386 2.13626 2.56753 3.29379 3.30436 3.35445 3.37839 3.75973 4.37090 4.40613 4.47973 4.55679 4.78999 4.87888 4.94565 5.02455 5.06520 5.09701 5.14204 5.18469 5.29878 5.30324 5.31799 5.32881 5.35696 5.39287 5.45165 5.56039 5.58484 5.66436 5.66820 5.70397 5.72977 5.77053 5.81169 5.89398 5.92422 5.95590 6.05053 6.09724 6.19108 6.30343 6.34729 6.36927 6.47428 6.68590 6.72971 6.98576 7.51195 7.54619 7.68421 7.91227 8.28743 8.95560 9.20095 9.54259 11.05063 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.023767 B = 0.002642 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.831654 B =10597.092550 C =11027.433615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.112 4.112 5 C -0.110 4.110 6 C 0.100 3.900 7 N -0.463 5.463 8 C 0.033 3.967 9 C 0.325 3.675 10 N -0.315 5.315 11 N -0.298 5.298 12 C 0.214 3.786 13 C -0.032 4.032 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.467 5.467 24 C 0.081 3.919 25 C -0.114 4.114 26 C -0.112 4.112 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.025 0.975 44 H 0.014 0.986 45 H 0.262 0.738 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.063 0.937 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 -3.466 25.135 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.106 4.106 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.008 4.008 7 N -0.188 5.188 8 C -0.114 4.114 9 C -0.032 4.032 10 N -0.159 5.159 11 N -0.138 5.138 12 C -0.053 4.053 13 C -0.072 4.072 14 C -0.006 4.006 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.160 5.160 24 C -0.062 4.062 25 C -0.152 4.152 26 C -0.150 4.150 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.043 0.957 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.109 0.891 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.081 0.919 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.123 -2.579 25.140 25.786 hybrid contribution -0.311 -0.864 -1.102 1.434 sum -5.434 -3.443 24.039 24.884 Atomic orbital electron populations 1.21823 0.96135 1.01416 1.01777 1.21676 0.95695 0.96470 1.02213 1.21167 0.95395 0.96312 0.97721 1.21547 1.00443 0.99150 0.93832 1.21556 0.93766 1.01250 0.98259 1.21700 0.94890 0.96080 0.88105 1.58693 1.12050 1.50591 0.97497 1.22441 0.84512 1.01561 1.02924 1.22087 1.02155 0.89142 0.89794 1.74474 1.20501 1.12627 1.08302 1.74037 1.14680 1.22174 1.02943 1.25615 1.01063 0.84143 0.94497 1.20442 0.99251 1.02904 0.84554 1.19061 0.92888 0.96774 0.91848 1.21108 0.94909 1.47213 0.93095 0.92328 1.25010 0.94787 0.95260 0.99180 1.69959 1.04818 1.46845 1.31494 0.86613 0.78817 0.78666 0.83653 1.20061 1.21279 1.20201 1.46196 1.45307 1.11477 1.12979 1.21991 1.01089 0.78089 1.05069 1.21682 1.00479 1.00273 0.92768 1.21547 0.95023 1.00669 0.97751 0.92479 0.93033 0.92995 0.92297 0.91060 0.91318 0.91556 0.91936 0.92385 0.91049 0.92280 0.90048 0.91281 0.93819 0.91188 0.89309 0.95663 0.96804 0.92795 0.90739 0.88719 0.89145 0.91608 0.90699 0.91859 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.12 -0.87 4.69 -26.73 -0.13 -1.00 16 3 C -0.09 -0.65 2.66 -90.62 -0.24 -0.89 16 4 C -0.11 -1.02 5.21 -26.73 -0.14 -1.16 16 5 C -0.11 -1.23 4.80 -26.73 -0.13 -1.36 16 6 C 0.10 1.12 1.84 -67.71 -0.12 1.00 16 7 N -0.46 -6.01 4.64 -174.76 -0.81 -6.82 16 8 C 0.03 0.38 8.89 60.07 0.53 0.92 16 9 C 0.32 5.45 5.04 -318.88 -1.61 3.84 16 10 N -0.31 -6.31 12.03 30.31 0.36 -5.95 16 11 N -0.30 -6.56 12.18 32.99 0.40 -6.15 16 12 C 0.21 4.30 7.32 -154.02 -1.13 3.17 16 13 C -0.03 -0.65 5.46 -27.88 -0.15 -0.80 16 14 C 0.03 0.83 4.96 -27.88 -0.14 0.69 16 15 C -0.53 -14.35 9.11 -34.44 -0.31 -14.66 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 N -0.47 -7.95 3.21 -121.46 -0.39 -8.34 16 24 C 0.08 1.05 10.89 59.84 0.65 1.70 16 25 C -0.11 -0.95 4.57 -26.73 -0.12 -1.07 16 26 C -0.11 -0.81 5.45 -26.73 -0.15 -0.96 16 27 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.56 4.83 -51.93 -0.25 0.31 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.58 6.56 -51.93 -0.34 0.24 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.83 7.22 -51.93 -0.38 0.45 16 36 H 0.07 0.76 6.32 -51.93 -0.33 0.44 16 37 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 38 H 0.08 0.71 6.62 -51.93 -0.34 0.36 16 39 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 41 H 0.07 1.28 7.98 -51.93 -0.41 0.86 16 42 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 48 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 49 H 0.07 0.51 6.49 -51.93 -0.34 0.18 16 50 H 0.07 0.61 6.54 -51.93 -0.34 0.27 16 51 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -32.12 397.33 -11.01 -43.13 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -9.36 Total: -2.51 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -2.92 Total: -9.71 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.30 Total: -53.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.12 -11.01 -43.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341697880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.141 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds