Wall clock time and date at job start Tue Mar 31 2020 13:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47072 * 2 1 4 4 H 1.08999 * 110.72528 * 301.90670 * 3 2 1 5 5 C 1.54932 * 110.66609 * 178.80419 * 3 2 1 6 6 C 1.54598 * 102.92172 * 204.14814 * 5 3 2 7 7 C 1.54000 * 105.13944 * 21.96247 * 6 5 3 8 8 N 1.47902 * 107.05400 * 1.21883 * 7 6 5 9 9 C 1.38584 * 111.00085 * 214.15641 * 8 7 6 10 10 N 1.31214 * 126.47575 * 245.86354 * 9 8 7 11 11 N 1.28526 * 109.86070 * 180.25497 * 10 9 8 12 12 C 1.30294 * 110.05160 * 359.74335 * 11 10 9 13 13 C 1.50701 * 126.34513 * 180.02562 * 12 11 10 14 14 C 1.53010 * 109.46861 * 289.12395 * 13 12 11 15 15 C 1.50702 * 109.46935 * 174.14495 * 14 13 12 16 16 H 1.07997 * 120.00013 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99751 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00136 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99649 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47257 * 59.99717 * 19 17 15 21 21 H 1.48505 * 109.46716 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46949 * 299.99323 * 19 17 15 23 23 N 1.36452 * 126.47034 * 65.68270 * 9 8 7 24 24 C 1.46499 * 127.13790 * 0.02713 * 23 9 8 25 25 C 1.53001 * 109.47413 * 96.35590 * 24 23 9 26 26 C 1.52996 * 109.47231 * 175.03340 * 25 24 23 27 27 C 1.53000 * 109.46872 * 55.02755 * 25 24 23 28 28 H 1.08999 * 109.47468 * 299.99864 * 1 2 3 29 29 H 1.08998 * 109.47159 * 60.00678 * 1 2 3 30 30 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46992 * 239.99586 * 2 1 3 32 32 H 1.09005 * 109.46673 * 120.00059 * 2 1 3 33 33 H 1.08998 * 110.72222 * 85.79584 * 5 3 2 34 34 H 1.09000 * 110.87920 * 322.57926 * 5 3 2 35 35 H 1.08995 * 110.31069 * 263.04419 * 6 5 3 36 36 H 1.09003 * 110.30550 * 140.87093 * 6 5 3 37 37 H 1.09001 * 109.91286 * 241.87443 * 7 6 5 38 38 H 1.08995 * 110.08340 * 120.66567 * 7 6 5 39 39 H 1.08992 * 109.47245 * 49.12344 * 13 12 11 40 40 H 1.09001 * 109.46831 * 169.13075 * 13 12 11 41 41 H 1.08995 * 109.46801 * 294.14310 * 14 13 12 42 42 H 1.08998 * 109.46900 * 54.14687 * 14 13 12 43 43 H 0.97003 * 119.99999 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.47000 * 336.35387 * 24 23 9 45 45 H 1.08994 * 109.47108 * 216.36018 * 24 23 9 46 46 H 1.09002 * 109.46897 * 295.03177 * 25 24 23 47 47 H 1.09002 * 109.47047 * 299.99745 * 26 25 24 48 48 H 1.09001 * 109.47600 * 59.99887 * 26 25 24 49 49 H 1.09001 * 109.46979 * 180.02562 * 26 25 24 50 50 H 1.09004 * 109.46918 * 166.55011 * 27 25 24 51 51 H 1.08996 * 109.47123 * 286.55152 * 27 25 24 52 52 H 1.08994 * 109.46802 * 46.55413 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6606 1.9857 -0.8654 5 6 3.5887 1.4749 0.0303 6 6 3.8936 2.8610 0.6432 7 6 2.6161 3.2518 1.4093 8 7 1.6610 2.1325 1.2595 9 6 0.3568 2.5973 1.1981 10 7 -0.5894 2.3848 2.0819 11 7 -1.6760 2.9586 1.7048 12 6 -1.4874 3.5706 0.5701 13 6 -2.5145 4.3593 -0.2007 14 6 -3.5486 3.4029 -0.7984 15 6 -4.6527 4.1981 -1.4463 16 1 -4.6203 5.2775 -1.4328 17 6 -5.7047 3.5475 -2.0554 18 7 -5.7444 2.2330 -2.0714 19 14 -7.0729 4.5331 -2.8592 20 1 -6.5041 5.3823 -3.9364 21 1 -8.0766 3.6049 -3.4392 22 1 -7.7253 5.3954 -1.8415 23 7 -0.1848 3.3652 0.2087 24 6 0.4880 3.8613 -0.9944 25 6 0.1976 2.9208 -2.1657 26 6 0.7960 3.5030 -3.4478 27 6 -1.3155 2.7669 -2.3331 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9958 1.4012 -0.9782 34 1 3.9817 0.6787 0.6625 35 1 4.0991 3.5860 -0.1443 36 1 4.7395 2.7943 1.3274 37 1 2.1918 4.1614 0.9841 38 1 2.8446 3.4064 2.4638 39 1 -3.0123 5.0601 0.4693 40 1 -2.0228 4.9100 -1.0027 41 1 -3.0694 2.7706 -1.5457 42 1 -3.9659 2.7790 -0.0080 43 1 -6.4843 1.7753 -2.5002 44 1 1.5630 3.9019 -0.8189 45 1 0.1206 4.8599 -1.2305 46 1 0.6422 1.9455 -1.9675 47 1 0.3513 4.4782 -3.6461 48 1 1.8739 3.6126 -3.3286 49 1 0.5886 2.8331 -4.2823 50 1 -1.5291 2.3009 -3.2951 51 1 -1.7079 2.1415 -1.5313 52 1 -1.7872 3.7486 -2.2923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344976961.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:55 Heat of formation + Delta-G solvation = 75.565611 kcal Electronic energy + Delta-G solvation = -30140.658282 eV Core-core repulsion = 26562.403789 eV Total energy + Delta-G solvation = -3578.254493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.22063 -40.51571 -38.28474 -36.02630 -34.71909 -34.12519 -33.96538 -32.71624 -29.70824 -29.07277 -28.26875 -27.80420 -27.06189 -24.51453 -23.85950 -22.86250 -22.16011 -21.83575 -21.47480 -20.51776 -18.72733 -18.31001 -17.64418 -17.31915 -16.64603 -16.34651 -16.04598 -15.88341 -15.25235 -15.16185 -14.57575 -14.41179 -14.34883 -14.26565 -14.05768 -13.86087 -13.69544 -13.59690 -13.19304 -13.11158 -12.95167 -12.78451 -12.64574 -12.49318 -12.41420 -12.40620 -12.30671 -12.26267 -11.92112 -11.80416 -11.69578 -11.62196 -11.55883 -11.33349 -11.24208 -10.99529 -10.88984 -10.40503 -9.93273 -9.71618 -8.15075 -6.25041 0.76459 1.40088 1.42708 1.45131 1.52273 1.87342 2.42160 2.44605 3.19014 3.39117 3.46120 3.54799 3.61322 3.68958 3.84394 3.92254 3.94942 4.07613 4.13809 4.15320 4.24182 4.30178 4.33128 4.51464 4.60938 4.62768 4.63227 4.68689 4.76397 4.80242 4.85061 4.90331 4.92640 4.94101 4.95590 4.99474 5.02679 5.10939 5.12927 5.17749 5.20243 5.24566 5.33038 5.37307 5.48303 5.53310 5.56181 5.67762 5.75281 5.89479 6.23497 6.28839 6.90635 7.42613 7.86380 8.96266 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.004013 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.736418 B = 6976.321267 C = 7262.263665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C 0.035 3.965 4 H 0.085 0.915 5 C -0.109 4.109 6 C -0.119 4.119 7 C 0.029 3.971 8 N -0.430 5.430 9 C 0.350 3.650 10 N -0.321 5.321 11 N -0.340 5.340 12 C 0.208 3.792 13 C -0.018 4.018 14 C 0.015 3.985 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.960 3.040 20 H -0.261 1.261 21 H -0.289 1.289 22 H -0.272 1.272 23 N -0.488 5.488 24 C 0.095 3.905 25 C -0.113 4.113 26 C -0.137 4.137 27 C -0.153 4.153 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.050 0.950 42 H -0.027 1.027 43 H 0.261 0.739 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.064 0.936 50 H 0.052 0.948 51 H 0.032 0.968 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.659 2.586 -3.519 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.136 4.136 3 C -0.071 4.071 4 H 0.102 0.898 5 C -0.147 4.147 6 C -0.157 4.157 7 C -0.098 4.098 8 N -0.156 5.156 9 C -0.006 4.006 10 N -0.162 5.162 11 N -0.179 5.179 12 C -0.061 4.061 13 C -0.058 4.058 14 C -0.023 4.023 15 C -0.573 4.573 16 H 0.083 0.917 17 C -0.193 4.193 18 N -0.572 5.572 19 Si 0.784 3.216 20 H -0.185 1.185 21 H -0.214 1.214 22 H -0.197 1.197 23 N -0.184 5.184 24 C -0.027 4.027 25 C -0.132 4.132 26 C -0.195 4.195 27 C -0.210 4.210 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.068 0.932 42 H -0.009 1.009 43 H 0.069 0.931 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.051 0.949 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.923 1.596 -1.850 25.043 hybrid contribution -1.327 0.869 -1.513 2.192 sum 23.597 2.465 -3.363 23.962 Atomic orbital electron populations 1.21990 0.98264 1.01282 1.00939 1.21413 0.93545 0.95265 1.03359 1.23733 0.98138 0.95603 0.89654 0.89755 1.22562 0.90753 0.98048 1.03349 1.22442 0.95790 0.97294 1.00206 1.23179 0.92554 0.90974 1.03054 1.62034 0.94554 1.22692 1.36283 1.23209 0.94085 0.95482 0.87840 1.74305 0.96096 1.21017 1.24735 1.74092 1.18430 1.12992 1.12386 1.25139 0.85331 1.01031 0.94620 1.20222 0.92032 0.96527 0.97018 1.19586 0.92874 0.94579 0.95217 1.21551 1.06886 0.93561 1.35289 0.91664 1.25862 1.00696 0.95709 0.97004 1.70117 1.32781 1.08965 1.45319 0.85585 0.78627 0.78373 0.78966 1.18513 1.21440 1.19709 1.47394 1.10309 1.40305 1.20389 1.22537 0.98736 0.99806 0.81574 1.21771 0.96508 0.99373 0.95548 1.21758 1.01644 1.01541 0.94540 1.22399 0.95140 1.02635 1.00834 0.93976 0.94377 0.93007 0.88906 0.91011 0.87647 0.89816 0.88767 0.88631 0.93366 0.89526 0.90585 0.88675 0.93219 1.00889 0.93056 0.86283 0.87233 0.89948 0.91746 0.89722 0.91734 0.92882 0.94892 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.31 9.18 71.98 0.66 -4.65 16 2 C -0.10 -2.16 5.69 30.59 0.17 -1.98 16 3 C 0.04 0.67 2.16 45.26 0.10 0.77 16 4 H 0.09 1.57 2.32 -2.39 -0.01 1.56 16 5 C -0.11 -1.17 6.50 31.80 0.21 -0.97 16 6 C -0.12 -1.13 6.93 31.48 0.22 -0.91 16 7 C 0.03 0.52 5.94 86.45 0.51 1.04 16 8 N -0.43 -10.85 5.05 -670.05 -3.38 -14.24 16 9 C 0.35 11.72 4.26 260.11 1.11 12.83 16 10 N -0.32 -13.93 11.11 -58.00 -0.64 -14.57 16 11 N -0.34 -16.03 12.18 -49.54 -0.60 -16.63 16 12 C 0.21 8.43 6.05 137.64 0.83 9.26 16 13 C -0.02 -0.76 4.73 29.85 0.14 -0.62 16 14 C 0.02 0.79 4.06 29.85 0.12 0.91 16 15 C -0.53 -29.45 9.11 25.60 0.23 -29.21 16 16 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.01 0.30 5.46 84.65 0.46 0.76 16 18 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 19 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 N -0.49 -15.30 2.54 -514.86 -1.31 -16.60 16 24 C 0.10 2.03 4.07 86.38 0.35 2.38 16 25 C -0.11 -2.48 2.61 -10.79 -0.03 -2.51 16 26 C -0.14 -2.04 9.15 71.98 0.66 -1.38 16 27 C -0.15 -5.05 5.78 71.98 0.42 -4.64 16 28 H 0.04 1.64 5.02 -2.39 -0.01 1.62 16 29 H 0.04 1.27 5.90 -2.39 -0.01 1.26 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.91 8.06 -2.39 -0.02 0.89 16 35 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 0.87 6.15 -2.39 -0.01 0.86 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.10 3.32 5.54 -2.39 -0.01 3.31 16 41 H 0.05 2.61 3.61 -2.39 -0.01 2.60 16 42 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 43 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.12 1.79 5.22 -2.39 -0.01 1.78 16 45 H 0.11 2.12 7.39 -2.39 -0.02 2.10 16 46 H 0.08 1.82 4.54 -2.39 -0.01 1.81 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.05 1.75 8.07 -2.38 -0.02 1.73 16 51 H 0.03 1.35 4.68 -2.39 -0.01 1.34 16 52 H 0.07 2.46 4.67 -2.39 -0.01 2.45 16 Total: -1.00 -76.21 371.62 3.47 -72.74 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.92 Total: 19.00 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 6.17 Total: -18.93 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -5.65 Total: -118.58 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -76.21 3.47 -72.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344976961.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.308 kcal (2) G-P(sol) polarization free energy of solvation -76.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds