Wall clock time and date at job start Tue Mar 31 2020 12:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 C 1.53003 * 109.53545 * 60.09775 * 3 2 1 5 5 C 1.53117 * 109.50438 * 300.00443 * 3 2 1 6 6 C 1.53125 * 109.16361 * 182.40182 * 5 3 2 7 7 C 1.53041 * 109.27756 * 57.65070 * 6 5 3 8 8 N 1.46842 * 109.52166 * 300.82385 * 7 6 5 9 9 C 1.38582 * 110.99864 * 185.83775 * 8 7 6 10 10 N 1.31223 * 126.47182 * 290.21197 * 9 8 7 11 11 N 1.28530 * 109.85495 * 179.82171 * 10 9 8 12 12 C 1.30294 * 110.05729 * 0.45052 * 11 10 9 13 13 C 1.50700 * 126.34651 * 179.69047 * 12 11 10 14 14 C 1.53001 * 109.46606 * 113.52972 * 13 12 11 15 15 C 1.52998 * 109.47137 * 233.52915 * 13 12 11 16 16 C 1.50702 * 109.47004 * 353.53409 * 13 12 11 17 17 H 1.07998 * 119.99858 * 359.97438 * 16 13 12 18 18 C 1.37882 * 119.99639 * 179.97438 * 16 13 12 19 19 N 1.31511 * 119.99787 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99739 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.47067 * 90.00310 * 20 18 16 22 22 H 1.48505 * 109.46918 * 210.00101 * 20 18 16 23 23 H 1.48503 * 109.47097 * 330.00050 * 20 18 16 24 24 N 1.36455 * 126.47439 * 110.52181 * 9 8 7 25 25 C 1.46502 * 127.13253 * 0.02562 * 24 9 8 26 26 C 1.46847 * 111.20135 * 61.74287 * 8 7 6 27 27 H 1.08995 * 109.47096 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46651 * 299.99919 * 1 2 3 29 29 H 1.08998 * 109.47273 * 59.99514 * 1 2 3 30 30 H 1.09003 * 109.47059 * 240.00009 * 2 1 3 31 31 H 1.09002 * 109.47384 * 119.99993 * 2 1 3 32 32 H 1.08999 * 109.47472 * 299.90667 * 4 3 2 33 33 H 1.09003 * 109.46923 * 59.89938 * 4 3 2 34 34 H 1.08999 * 109.47571 * 179.90188 * 4 3 2 35 35 H 1.09002 * 109.52580 * 62.49704 * 5 3 2 36 36 H 1.08999 * 109.57454 * 302.33756 * 5 3 2 37 37 H 1.08998 * 109.50637 * 177.59207 * 6 5 3 38 38 H 1.08997 * 109.50212 * 297.71242 * 6 5 3 39 39 H 1.09004 * 109.46034 * 60.83599 * 7 6 5 40 40 H 1.08998 * 109.46409 * 180.80729 * 7 6 5 41 41 H 1.09003 * 109.47066 * 56.19777 * 14 13 12 42 42 H 1.09004 * 109.46713 * 176.18951 * 14 13 12 43 43 H 1.09001 * 109.47643 * 296.19495 * 14 13 12 44 44 H 1.08997 * 109.46852 * 60.00240 * 15 13 12 45 45 H 1.09000 * 109.46932 * 180.02562 * 15 13 12 46 46 H 1.08998 * 109.47190 * 300.00335 * 15 13 12 47 47 H 0.97003 * 119.99845 * 180.02562 * 19 18 16 48 48 H 1.08995 * 109.47059 * 95.14435 * 25 24 9 49 49 H 1.09002 * 109.46557 * 215.14181 * 25 24 9 50 50 H 1.08995 * 109.47107 * 335.14127 * 25 24 9 51 51 H 1.08997 * 109.46264 * 178.24155 * 26 8 7 52 52 H 1.09002 * 109.46328 * 58.26930 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5329 2.1645 1.2500 5 6 1.5300 2.1650 -1.2499 6 6 2.0936 3.5886 -1.2727 7 6 3.6225 3.5273 -1.2407 8 7 4.0602 2.8276 -0.0262 9 6 5.4397 2.8682 0.1004 10 7 6.3108 2.2368 -0.6509 11 7 7.5039 2.5037 -0.2542 12 6 7.4648 3.3068 0.7711 13 6 8.6505 3.8473 1.5280 14 6 8.7417 5.3604 1.3198 15 6 8.4840 3.5467 3.0189 16 6 9.9103 3.1937 1.0213 17 1 9.8575 2.4600 0.2306 18 6 11.1303 3.5325 1.5673 19 7 11.1943 4.4256 2.5305 20 14 12.6918 2.7218 0.9397 21 1 13.2499 3.5226 -0.1793 22 1 13.6870 2.6469 2.0394 23 1 12.3798 1.3514 0.4603 24 7 6.1484 3.5675 1.0335 25 6 5.6104 4.4204 2.0962 26 6 3.5704 1.4434 -0.0050 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.4429 2.1666 1.2513 33 1 1.8962 1.6496 2.1395 34 1 1.8982 3.1914 1.2499 35 1 0.4409 2.2048 -1.2288 36 1 1.8577 1.6293 -2.1407 37 1 1.7687 4.0942 -2.1820 38 1 1.7332 4.1367 -0.4022 39 1 3.9828 2.9910 -2.1186 40 1 4.0267 4.5395 -1.2424 41 1 7.8042 5.8261 1.6237 42 1 9.5580 5.7612 1.9208 43 1 8.9279 5.5718 0.2669 44 1 8.4190 2.4688 3.1671 45 1 9.3414 3.9381 3.5664 46 1 7.5727 4.0194 3.3853 47 1 12.0526 4.6642 2.9143 48 1 5.5289 3.8444 3.0180 49 1 6.2776 5.2676 2.2549 50 1 4.6245 4.7837 1.8064 51 1 3.9367 0.9422 0.8909 52 1 3.9310 0.9169 -0.8887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350871206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:48 Heat of formation + Delta-G solvation = 72.647374 kcal Electronic energy + Delta-G solvation = -29046.710835 eV Core-core repulsion = 25468.329797 eV Total energy + Delta-G solvation = -3578.381037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26471 -39.87666 -36.08735 -35.46328 -34.03063 -32.52042 -31.12805 -30.07585 -28.12927 -27.16885 -27.05899 -25.87700 -25.22300 -24.76353 -23.59056 -21.87296 -21.78795 -20.06607 -19.19348 -18.32825 -17.00545 -15.95747 -15.79998 -15.52556 -15.11208 -14.92882 -14.61690 -14.51877 -14.38200 -14.11447 -13.53069 -13.29481 -13.08964 -13.00951 -12.67877 -12.36382 -12.26669 -12.13390 -11.96935 -11.74659 -11.47082 -11.40943 -11.32550 -11.06981 -10.89325 -10.84829 -10.66918 -10.64832 -10.58037 -10.37024 -10.28324 -10.16285 -10.07222 -9.94206 -9.73997 -9.41731 -8.85824 -8.46520 -8.39420 -8.06271 -6.02023 -4.07052 2.45181 2.82954 3.35021 3.40934 3.49055 3.70384 3.97691 4.45896 4.46565 4.59270 4.65786 4.89547 5.05450 5.07786 5.15552 5.20472 5.27898 5.35312 5.38148 5.39485 5.46439 5.49507 5.54605 5.60814 5.66928 5.73288 5.75432 5.79778 5.80977 5.84998 5.90714 5.97254 5.99506 6.06096 6.12951 6.21692 6.26760 6.40498 6.56517 6.61924 6.68133 6.71297 6.77392 6.87547 7.14949 7.28028 7.38331 7.65517 7.83434 7.84370 8.10503 8.32590 8.99912 9.54561 9.65245 11.02009 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.003162 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.934424 B = 8852.811402 C = 9070.053157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.057 4.057 4 C -0.135 4.135 5 C -0.112 4.112 6 C -0.116 4.116 7 C 0.066 3.934 8 N -0.455 5.455 9 C 0.302 3.698 10 N -0.320 5.320 11 N -0.290 5.290 12 C 0.242 3.758 13 C 0.146 3.854 14 C -0.130 4.130 15 C -0.135 4.135 16 C -0.492 4.492 17 H 0.077 0.923 18 C 0.063 3.937 19 N -0.896 5.896 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.272 1.272 24 N -0.472 5.472 25 C 0.083 3.917 26 C 0.082 3.918 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.009 0.991 42 H 0.096 0.904 43 H 0.033 0.967 44 H 0.030 0.970 45 H 0.098 0.902 46 H 0.013 0.987 47 H 0.260 0.740 48 H 0.073 0.927 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.073 0.927 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.461 -0.883 -1.329 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.057 4.057 4 C -0.193 4.193 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.061 4.061 8 N -0.180 5.180 9 C -0.054 4.054 10 N -0.165 5.165 11 N -0.128 5.128 12 C -0.024 4.024 13 C 0.143 3.857 14 C -0.189 4.189 15 C -0.194 4.194 16 C -0.530 4.530 17 H 0.095 0.905 18 C -0.138 4.138 19 N -0.535 5.535 20 Si 0.728 3.272 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.197 1.197 24 N -0.165 5.165 25 C -0.061 4.061 26 C -0.046 4.046 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.028 0.972 42 H 0.115 0.885 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.116 0.884 46 H 0.032 0.968 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.109 0.891 50 H 0.102 0.898 51 H 0.091 0.909 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.983 -1.438 -1.908 21.119 hybrid contribution 0.594 0.037 0.130 0.609 sum -20.389 -1.401 -1.778 20.515 Atomic orbital electron populations 1.21850 0.95730 1.01365 1.02026 1.21530 0.95996 0.95469 1.02177 1.20612 0.93670 0.95251 0.96182 1.21851 0.99902 1.01344 0.96157 1.21709 1.00338 0.95562 0.97302 1.21654 0.94068 0.97358 1.02328 1.22120 0.95550 0.98599 0.89877 1.58437 1.02930 1.17383 1.39259 1.22104 0.90557 0.99594 0.93153 1.74509 0.96688 1.21814 1.23463 1.74109 1.12308 1.15137 1.11229 1.26202 0.83952 0.96337 0.95953 1.16925 0.85865 0.92635 0.90291 1.21919 0.99723 0.96193 1.01030 1.21962 1.00569 0.99189 0.97643 1.21087 0.88957 1.23206 1.19786 0.90504 1.24867 0.98971 0.95080 0.94841 1.69783 1.25147 1.32477 1.26093 0.86445 0.82383 0.80137 0.78252 1.20689 1.21389 1.19688 1.46243 1.07400 1.37470 1.25378 1.22050 1.00258 0.94671 0.89073 1.22098 0.93839 0.86603 1.02054 0.93043 0.92391 0.92511 0.91935 0.91852 0.92991 0.93101 0.91385 0.91383 0.92003 0.91239 0.90801 0.93339 0.90960 0.97216 0.88521 0.94736 0.95124 0.88380 0.96843 0.92949 0.90865 0.89073 0.89841 0.90881 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.21 37.16 0.34 -0.74 16 2 C -0.11 -0.98 4.99 -26.73 -0.13 -1.12 16 3 C -0.06 -0.55 0.54 -154.43 -0.08 -0.63 16 4 C -0.14 -1.24 7.68 37.16 0.29 -0.95 16 5 C -0.11 -0.98 4.36 -26.61 -0.12 -1.09 16 6 C -0.12 -1.07 5.74 -26.65 -0.15 -1.23 16 7 C 0.07 0.84 5.40 -3.83 -0.02 0.82 16 8 N -0.45 -6.56 3.92 -174.55 -0.68 -7.24 16 9 C 0.30 5.70 6.47 -318.86 -2.06 3.64 16 10 N -0.32 -7.21 12.10 30.32 0.37 -6.84 16 11 N -0.29 -7.30 11.01 32.99 0.36 -6.94 16 12 C 0.24 5.63 6.34 -154.02 -0.98 4.66 16 13 C 0.15 3.52 0.52 -156.81 -0.08 3.43 16 14 C -0.13 -2.98 8.13 37.16 0.30 -2.67 16 15 C -0.14 -3.06 8.09 37.16 0.30 -2.76 16 16 C -0.49 -13.43 7.91 -34.44 -0.27 -13.70 16 17 H 0.08 2.23 6.96 -52.49 -0.37 1.87 16 18 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 19 N -0.90 -23.73 9.39 55.43 0.52 -23.21 16 20 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 N -0.47 -9.07 3.21 -121.46 -0.39 -9.46 16 25 C 0.08 1.22 9.40 59.85 0.56 1.78 16 26 C 0.08 1.07 4.02 -3.83 -0.02 1.06 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.40 6.44 -51.93 -0.33 0.06 16 29 H 0.06 0.38 6.49 -51.93 -0.34 0.04 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.41 6.44 -51.93 -0.33 0.07 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.68 6.01 -51.93 -0.31 0.36 16 35 H 0.07 0.51 6.58 -51.93 -0.34 0.17 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 41 H 0.01 0.18 5.69 -51.93 -0.30 -0.12 16 42 H 0.10 2.36 6.18 -51.93 -0.32 2.04 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 46 H 0.01 0.25 5.50 -51.93 -0.29 -0.04 16 47 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 48 H 0.07 1.00 7.65 -51.93 -0.40 0.60 16 49 H 0.09 1.34 5.26 -51.93 -0.27 1.07 16 50 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 51 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 52 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -29.66 380.35 -10.21 -39.87 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -8.88 Total: -0.40 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.22 Total: -7.93 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.18 Total: -53.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.66 -10.21 -39.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350871206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.520 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds