Wall clock time and date at job start Tue Mar 31 2020 13:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99795 * 2 1 4 4 C 1.50701 * 119.99958 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47050 * 96.13845 * 4 2 1 6 6 C 1.36739 * 127.13588 * 264.85086 * 5 4 2 7 7 C 1.50698 * 126.34548 * 0.02562 * 6 5 4 8 8 C 1.53008 * 109.47239 * 96.06487 * 7 6 5 9 9 C 1.52997 * 109.46975 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46738 * 179.97438 * 9 8 7 11 11 C 1.53009 * 109.46895 * 180.02562 * 10 9 8 12 12 N 1.30294 * 107.30603 * 179.97438 * 6 5 4 13 13 N 1.28529 * 110.05156 * 359.97438 * 12 6 5 14 14 C 1.31218 * 109.86305 * 359.74295 * 13 12 6 15 15 N 1.38579 * 126.47669 * 180.25562 * 14 13 12 16 16 C 1.46903 * 111.00080 * 255.81991 * 15 14 13 17 17 C 1.46896 * 110.99637 * 19.77295 * 15 14 13 18 18 H 1.09001 * 109.47557 * 299.99485 * 17 15 14 19 19 C 1.53001 * 109.47311 * 60.00141 * 17 15 14 20 20 C 1.50704 * 109.46831 * 180.02562 * 17 15 14 21 21 H 1.07995 * 120.00295 * 359.97438 * 20 17 15 22 22 C 1.37883 * 119.99934 * 180.02562 * 20 17 15 23 23 N 1.31508 * 120.00084 * 179.97438 * 22 20 17 24 24 Si 1.86804 * 119.99987 * 359.97438 * 22 20 17 25 25 H 1.48500 * 109.46824 * 90.00171 * 24 22 20 26 26 H 1.48491 * 109.47157 * 209.99967 * 24 22 20 27 27 H 1.48507 * 109.47211 * 330.00340 * 24 22 20 28 28 H 1.08001 * 119.99961 * 357.03897 * 1 2 3 29 29 H 1.08001 * 119.99688 * 176.77202 * 1 2 3 30 30 H 1.09003 * 109.46617 * 95.00924 * 3 2 1 31 31 H 1.09000 * 109.46975 * 215.00650 * 3 2 1 32 32 H 1.08999 * 109.46977 * 335.00901 * 3 2 1 33 33 H 1.09004 * 109.46781 * 216.13441 * 4 2 1 34 34 H 1.08994 * 109.47244 * 336.13742 * 4 2 1 35 35 H 1.08998 * 109.47165 * 216.06610 * 7 6 5 36 36 H 1.09006 * 109.47378 * 336.06362 * 7 6 5 37 37 H 1.08991 * 109.46905 * 299.99848 * 8 7 6 38 38 H 1.09003 * 109.46739 * 60.00069 * 8 7 6 39 39 H 1.08998 * 109.47701 * 300.00289 * 9 8 7 40 40 H 1.09003 * 109.46928 * 60.00679 * 9 8 7 41 41 H 1.09005 * 109.47226 * 300.00193 * 10 9 8 42 42 H 1.08993 * 109.46971 * 60.00555 * 10 9 8 43 43 H 1.09002 * 109.46701 * 180.02562 * 11 10 9 44 44 H 1.09002 * 109.46674 * 300.00273 * 11 10 9 45 45 H 1.08993 * 109.47097 * 60.00339 * 11 10 9 46 46 H 1.08995 * 109.47254 * 66.69523 * 16 15 14 47 47 H 1.08997 * 109.46597 * 186.69635 * 16 15 14 48 48 H 1.08997 * 109.46552 * 306.69386 * 16 15 14 49 49 H 1.08991 * 109.47286 * 59.99776 * 19 17 15 50 50 H 1.08999 * 109.47146 * 179.97438 * 19 17 15 51 51 H 1.08999 * 109.47041 * 299.99791 * 19 17 15 52 52 H 0.96998 * 120.00148 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4356 -1.6536 -1.3741 6 6 1.7535 -2.4712 -2.2319 7 6 0.4625 -3.1923 -1.9417 8 6 -0.7126 -2.3676 -2.4710 9 6 -2.0232 -3.1001 -2.1768 10 6 -3.1982 -2.2750 -2.7055 11 6 -4.5090 -3.0073 -2.4108 12 7 2.4261 -2.5104 -3.3472 13 7 3.4783 -1.7783 -3.2532 14 6 3.5310 -1.2239 -2.0650 15 7 4.5154 -0.3672 -1.5986 16 6 5.4202 -1.0600 -0.6715 17 6 5.2615 0.2333 -2.7124 18 1 5.7334 -0.5541 -3.3001 19 6 4.3011 1.0268 -3.6006 20 6 6.3211 1.1561 -2.1674 21 1 6.4291 1.2840 -1.1005 22 6 7.1519 1.8379 -3.0311 23 7 8.0762 2.6436 -2.5557 24 14 6.9647 1.6173 -4.8766 25 1 6.0057 2.6228 -5.4005 26 1 8.2836 1.8018 -5.5335 27 1 6.4558 0.2518 -5.1628 28 1 -0.5400 0.9341 0.0483 29 1 -0.5400 -0.9339 -0.0527 30 1 2.3228 1.5749 1.0238 31 1 2.9741 1.1989 -0.5895 32 1 1.4384 2.0855 -0.4342 33 1 2.9640 -1.2050 0.6055 34 1 1.4313 -2.0898 0.4148 35 1 0.4724 -4.1663 -2.4310 36 1 0.3558 -3.3276 -0.8653 37 1 -0.7225 -1.3938 -1.9816 38 1 -0.6059 -2.2324 -3.5473 39 1 -2.0131 -4.0739 -2.6664 40 1 -2.1301 -3.2356 -1.1005 41 1 -3.2082 -1.3014 -2.2155 42 1 -3.0916 -2.1391 -3.7817 43 1 -5.3461 -2.4197 -2.7879 44 1 -4.4992 -3.9810 -2.9005 45 1 -4.6154 -3.1428 -1.3346 46 1 5.9857 -1.8177 -1.2139 47 1 6.1087 -0.3397 -0.2297 48 1 4.8375 -1.5364 0.1168 49 1 3.8293 1.8142 -3.0129 50 1 4.8549 1.4727 -4.4268 51 1 3.5351 0.3590 -3.9947 52 1 8.6610 3.1229 -3.1632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357134865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:27 Heat of formation + Delta-G solvation = 78.780201 kcal Electronic energy + Delta-G solvation = -28729.107547 eV Core-core repulsion = 25150.992449 eV Total energy + Delta-G solvation = -3578.115098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.97909 -39.07759 -37.92672 -37.07692 -34.94868 -34.47132 -33.62836 -32.11061 -30.57766 -28.58127 -28.08224 -27.52006 -26.92532 -26.10858 -23.80438 -23.36671 -21.81971 -21.71102 -21.02096 -19.69730 -18.92744 -17.95427 -17.41321 -17.05331 -16.76660 -16.40068 -15.89919 -15.74087 -15.47999 -15.12300 -14.97998 -14.75457 -14.58704 -14.28372 -14.13877 -14.05536 -13.95999 -13.62517 -13.27248 -12.92119 -12.85614 -12.78059 -12.76061 -12.65924 -12.48329 -12.44251 -12.23665 -12.16635 -11.87327 -11.78870 -11.71003 -11.54520 -11.44725 -11.31510 -11.21209 -10.98270 -10.78856 -10.35586 -10.10630 -9.18794 -8.34191 -6.36754 0.75244 0.98382 1.25155 1.32996 1.43569 1.66809 1.87874 2.27085 2.89361 3.02729 3.40620 3.60610 3.74095 3.89249 3.94813 3.99423 4.17115 4.20153 4.27785 4.35977 4.43362 4.44849 4.49148 4.53949 4.56643 4.59229 4.66199 4.69415 4.78383 4.84938 4.89821 4.91661 4.94595 4.96525 5.02656 5.03414 5.06521 5.09258 5.20171 5.25952 5.28168 5.29827 5.40110 5.45263 5.50457 5.56763 5.62604 5.72470 5.82821 5.88611 6.17919 6.55722 6.67444 7.27498 7.84678 8.80427 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.003502 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.319714 B = 7992.944276 C = 8428.440146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C -0.129 4.129 4 C 0.140 3.860 5 N -0.464 5.464 6 C 0.183 3.817 7 C -0.022 4.022 8 C -0.113 4.113 9 C -0.109 4.109 10 C -0.128 4.128 11 C -0.151 4.151 12 N -0.332 5.332 13 N -0.369 5.369 14 C 0.364 3.636 15 N -0.444 5.444 16 C 0.044 3.956 17 C 0.211 3.789 18 H -0.002 1.002 19 C -0.135 4.135 20 C -0.506 4.506 21 H 0.065 0.935 22 C 0.034 3.966 23 N -0.933 5.933 24 Si 0.927 3.073 25 H -0.268 1.268 26 H -0.292 1.292 27 H -0.266 1.266 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.020 0.980 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.054 0.946 50 H 0.037 0.963 51 H 0.042 0.958 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.826 -11.680 8.702 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C -0.186 4.186 4 C 0.019 3.981 5 N -0.158 5.158 6 C -0.085 4.085 7 C -0.062 4.062 8 C -0.151 4.151 9 C -0.146 4.146 10 C -0.166 4.166 11 C -0.208 4.208 12 N -0.171 5.171 13 N -0.213 5.213 14 C 0.007 3.993 15 N -0.168 5.168 16 C -0.102 4.102 17 C 0.103 3.897 18 H 0.015 0.985 19 C -0.193 4.193 20 C -0.544 4.544 21 H 0.084 0.916 22 C -0.166 4.166 23 N -0.572 5.572 24 Si 0.756 3.244 25 H -0.194 1.194 26 H -0.219 1.219 27 H -0.191 1.191 28 H 0.127 0.873 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.153 0.847 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.039 0.961 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.073 0.927 50 H 0.055 0.945 51 H 0.061 0.939 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.471 -11.546 7.528 27.219 hybrid contribution 0.832 0.434 -0.410 1.024 sum -22.639 -11.112 7.117 26.204 Atomic orbital electron populations 1.24079 0.94267 1.03659 0.97143 1.21789 0.95998 0.94783 1.03216 1.20930 1.00749 0.94374 1.02544 1.21210 1.02047 0.96616 0.78185 1.46465 1.17622 1.37009 1.14753 1.25497 0.99166 0.97063 0.86804 1.20256 0.83952 0.97958 1.04012 1.21609 0.93539 0.99219 1.00781 1.21548 0.91921 0.98824 1.02348 1.21539 0.94998 0.99363 1.00687 1.21763 0.96661 1.00385 1.02035 1.73842 1.03090 1.18570 1.21580 1.74612 1.16350 1.12227 1.18075 1.22802 0.91566 0.95549 0.89406 1.58822 1.13009 1.26386 1.18604 1.22357 0.95521 0.97642 0.94723 1.19359 0.90612 0.92691 0.86998 0.98465 1.22014 0.98918 0.99757 0.98582 1.21025 1.13921 1.24642 0.94799 0.91649 1.25406 0.94705 0.94517 1.01938 1.69944 1.21172 1.29558 1.36547 0.86181 0.76389 0.79573 0.82302 1.19445 1.21900 1.19055 0.87283 0.85849 0.90705 0.92075 0.92514 0.88100 0.84723 0.87824 0.86986 0.91616 0.93540 0.91292 0.89948 0.92054 0.93153 0.92913 0.92645 0.91965 0.96098 0.89538 0.89710 0.92689 0.94470 0.93918 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 12.83 67.78 0.87 -1.48 16 2 C -0.16 -3.24 5.64 -16.49 -0.09 -3.33 16 3 C -0.13 -3.36 10.05 71.24 0.72 -2.65 16 4 C 0.14 2.80 6.21 85.63 0.53 3.33 16 5 N -0.46 -13.47 2.79 -518.91 -1.45 -14.92 16 6 C 0.18 5.24 7.32 137.64 1.01 6.25 16 7 C -0.02 -0.37 5.64 29.85 0.17 -0.20 16 8 C -0.11 -1.78 5.20 30.60 0.16 -1.62 16 9 C -0.11 -1.13 5.21 30.59 0.16 -0.97 16 10 C -0.13 -1.50 5.93 30.60 0.18 -1.31 16 11 C -0.15 -1.46 9.91 71.99 0.71 -0.74 16 12 N -0.33 -12.90 12.18 -49.54 -0.60 -13.50 16 13 N -0.37 -16.40 9.96 -58.00 -0.58 -16.97 16 14 C 0.36 14.20 6.05 260.11 1.57 15.77 16 15 N -0.44 -18.33 3.28 -711.01 -2.33 -20.66 16 16 C 0.04 1.63 9.09 127.69 1.16 2.79 16 17 C 0.21 10.43 1.32 44.17 0.06 10.49 16 18 H 0.00 -0.13 6.98 -2.39 -0.02 -0.14 16 19 C -0.14 -6.53 8.50 71.98 0.61 -5.91 16 20 C -0.51 -28.01 8.54 25.60 0.22 -27.79 16 21 H 0.07 3.82 6.64 -2.91 -0.02 3.80 16 22 C 0.03 1.94 5.45 84.66 0.46 2.40 16 23 N -0.93 -56.64 13.96 21.45 0.30 -56.34 16 24 Si 0.93 46.86 24.37 68.60 1.67 48.53 16 25 H -0.27 -13.06 6.87 99.48 0.68 -12.37 16 26 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.27 -13.57 6.53 99.48 0.65 -12.92 16 28 H 0.11 1.56 8.01 -2.91 -0.02 1.54 16 29 H 0.12 1.28 6.94 -2.91 -0.02 1.26 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 2.08 6.71 -2.39 -0.02 2.06 16 32 H 0.06 1.43 8.00 -2.39 -0.02 1.42 16 33 H 0.10 2.04 6.48 -2.39 -0.02 2.03 16 34 H 0.13 1.56 6.85 -2.39 -0.02 1.55 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 1.07 7.02 -2.38 -0.02 1.06 16 37 H 0.07 1.07 5.85 -2.39 -0.01 1.06 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.09 3.38 6.34 -2.39 -0.02 3.37 16 48 H 0.08 2.40 6.46 -2.39 -0.02 2.38 16 49 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 50 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 51 H 0.04 2.03 6.20 -2.39 -0.01 2.02 16 52 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -72.66 397.68 6.32 -66.35 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.81 Total: 12.48 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 8.50 Total: -4.97 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -4.66 Total: -122.39 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.67 Total: 48.53 kcal Total: -72.66 6.32 -66.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357134865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.129 kcal (2) G-P(sol) polarization free energy of solvation -72.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds